TCONS_00006354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006354
Unique NameTCONS_00006354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006354 ID=TCONS_00006354|Name=TCONS_00006354|organism=Clytia hemisphaerica|type=transcript|length=327bp
GCAATTTTaaactttgattttgaaatttaattctTCTTACCCCTGGCCCT
GCTATTGAAATCTTTCTTCCTGTTTTGACTGCTTGATTTGTAAGTTTGTG
GAgatttagataaaaaatctgaGGCAGCTTGTTTTGACTTATCTTCTTGT
CGGGCTCATTCTGTACATACTATATTGGTAAAAAGTGCTCATGGGTAATG
AATCTGCATCATTCCATTACAAATCACGAATCTCTCATTGAAGTAAATCT
TCTAGATGAACCCGACTGTTTCGACCAgtgataaatttttaaaaaaattt
tcgcgcgCAACTAGACTAGCATTAAAC
Run BLAST on NCBI

transcript from alignment at sc0000066:323351..323677

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006354 ID=TCONS_00006354|Name=TCONS_00006354|organism=Clytia hemisphaerica|type=transcript|length=327bp|location=Sequence derived from alignment at sc0000066:323351..323677 (Clytia hemisphaerica)
GTTTAATGCTAGTCTAGTTGcgcgcgaaaatttttttaaaaatttatcac
TGGTCGAAACAGTCGGGTTCATCTAGAAGATTTACTTCAATGAGAGATTC
GTGATTTGTAATGGAATGATGCAGATTCATTACCCATGAGCACTTTTTAC
CAATATAGTATGTACAGAATGAGCCCGACAAGAAGATAAGTCAAAACAAG
CTGCCtcagattttttatctaaatcTCCACAAACTTACAAATCAAGCAGT
CAAAACAGGAAGAAAGATTTCAATAGCAGGGCCAGGGGTAAGAagaatta
aatttcaaaatcaaagtttAAAATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003627XLOC_003627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006354-exon-sc0000066-1491911889:323351..323677TCONS_00006354-exon-sc0000066-1491911889:323351..323677Clytia hemisphaericaexon
TCONS_00006354-exon-sc0000066-1510915933:323351..323677TCONS_00006354-exon-sc0000066-1510915933:323351..323677Clytia hemisphaericaexon
TCONS_00006354-exon-sc0000066-1575043694:323351..323677TCONS_00006354-exon-sc0000066-1575043694:323351..323677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:323351..323677 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.8232	6.15669	2.04243	4.32943	2.43262	1.60191	3.47874	5.42792	0.760042	0.313812	0.304593	0.400455	0.799797	0	0.682864	0.183204	1.57985	1.61929	0.958776	0	0.581361	0.850702	3.79185	4.07413	0	0	0.824487	0.439957	1.00108	4.41973
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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