TCONS_00006343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006343
Unique NameTCONS_00006343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006343 ID=TCONS_00006343|Name=TCONS_00006343|organism=Clytia hemisphaerica|type=transcript|length=679bp
aaaacaaagatggtagacAAGCTACCAGTGTGGACAGGACATCTCTCCTC
AAGTGCTTTTTAAGGACTcatgcaaaatgaaaaaactaagTGTCCACGTA
AACCAGGGGAGACAAAAATGACTCAAAGAAAACCCTGAGCAAAAATGAAA
GAGAATGAACGCTcactgaaaaatatatacaatgtCAAACAAATGCTAAA
AATGCAAATCCGGTTCAAACCAGTAATTCAGTTCACGTTAAAGTTCATAT
TGTTCTAAATGTTTTGGGATTTTGATGTTCCGTCTCGGTCTACCCTCTTC
TTCCTCAAGGTCATAAGGGACAGTGGATGCTTCGGAGTCATCGGATGAAT
CAGATTCAGTTTCAGAGTCTGTTTGTAGATCAGGTAGAAGGGTGAATGAC
GGAGTTGCTACTGAGGTGATGGGCGATTCCCTGACTTTGACTTCACTTGG
TGGAGCGCTTTGGACAACAGATTTCTGACGTACGGCTTGACATGGGTGAT
GTGACGTGTGATGGTGCGCTTTTCGTTTTGTAGCTCGACACTGAACGGGA
GTGCTCTTGTGACAGTTTATGGCATTGGTTCGAAATACGGTTCAGACTTG
TTTGATCGGTTGAAGACTTTTACCAGAACTTGGTCTCCTTTGTTGTAGAC
GTGCTTGTTGGTGGTACGTTTGTTGTCTT
Run BLAST on NCBI

transcript from alignment at sc0000066:98401..99079

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006343 ID=TCONS_00006343|Name=TCONS_00006343|organism=Clytia hemisphaerica|type=transcript|length=679bp|location=Sequence derived from alignment at sc0000066:98401..99079 (Clytia hemisphaerica)
AAGACAACAAACGTACCACCAACAAGCACGTCTACAACAAAGGAGACCAA
GTTCTGGTAAAAGTCTTCAACCGATCAAACAAGTCTGAACCGTATTTCGA
ACCAATGCCATAAACTGTCACAAGAGCACTCCCGTTCAGTGTCGAGCTAC
AAAACGAAAAGCGCACCATCACACGTCACATCACCCATGTCAAGCCGTAC
GTCAGAAATCTGTTGTCCAAAGCGCTCCACCAAGTGAAGTCAAAGTCAGG
GAATCGCCCATCACCTCAGTAGCAACTCCGTCATTCACCCTTCTACCTGA
TCTACAAACAGACTCTGAAACTGAATCTGATTCATCCGATGACTCCGAAG
CATCCACTGTCCCTTATGACCTTGAGGAAGAAGAGGGTAGACCGAGACGG
AACATCAAAATCCCAAAACATTTAGAACAATATGAACTTTAACGTGAACT
GAATTACTGGTTTGAACCGGATTTGCATTTTTAGCATTTGTTTGacattg
tatatatttttcagtgAGCGTTCATTCTCTTTCATTTTTGCTCAGGGTTT
TCTTTGAGTCATTTTTGTCTCCCCTGGTTTACGTGGACActtagtttttt
cattttgcatgAGTCCTTAAAAAGCACTTGAGGAGAGATGTCCTGTCCAC
ACTGGTAGCTTgtctaccatctttgtttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003616XLOC_003616Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006343-exon-sc0000066-1491911889:98401..99079TCONS_00006343-exon-sc0000066-1491911889:98401..99079Clytia hemisphaericaexon
TCONS_00006343-exon-sc0000066-1510915933:98401..99079TCONS_00006343-exon-sc0000066-1510915933:98401..99079Clytia hemisphaericaexon
TCONS_00006343-exon-sc0000066-1575043694:98401..99079TCONS_00006343-exon-sc0000066-1575043694:98401..99079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:98401..99079 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.147492	0.427337	0.982865	2.74847	2.04211	0.812336	1.31856	0.548656	0.926137	0.536994	0.402572	7.80795	2.4524	0.171451	0.0459982	0	0.0580808	5.64949	8.06384	0.29241	0.106795	0.0866767	0.0786857	0.243133	0.289321	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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