TCONS_00006325 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006325
Unique Name	TCONS_00006325
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2396

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000066:641594..643989-

transcript sequence

>TCONS_00006325 ID=TCONS_00006325|Name=TCONS_00006325|organism=Clytia hemisphaerica|type=transcript|length=2396bp
GTTCCTGATACCGAAAAGTCATCCTGAAAGTCAAAACCCGATGGTTGAAT
GGAGATTGTCATTTTCATTGGTCGAGAAAGAAATTCTCCTAAATCTCCCA
TTGTCCTGGAGAAAGGTTTATTTGATCATAAAATCTCAATTCAAAGAATC
TCACGAGCAATCTTTTNATTCAAAGAGTTCCACGAGCAACCCTTTAGGAG
AAGGATAGAGAATGGCCGGGAAATATTACCAGATCAACAGTATTACCAAA
GTCCGTTGGAAAGTTAtcacatcaaaacagttttacTGTGGCTTTACGAG
AAACATACTgactttgatgaaaatgatatcaTAGGATTATTGAAACTTGT
TGTCGATCGTTTATTAGAAGCATTCTCGGAGATGAAGCTGCCAAACTATT
TCATAccgggtcaaaatattttgagaaatgcacaaaaatatgatttttat
aaaattgagaGAGTCAAAGAAATGTTAGAAAAGATCAAGCTCGTCGATAA
TCTTATGTTCCTTTATATAAGGGGATCGATGCTAAACCAGGATTATAGAA
AAACATCATTCACAACCTCTAGAGCAacaaaactaaaagaaaatgGATTT
CTAGACAACATACCTGATAATGCTAACTTGAAGTTGATGTTTGTTGCAGA
AATTTATAATGAATGTATGATACACCTGACGTCATTTCTATCACTGCTTT
TCCATGAGGATAAAGATAACGATTTATCAAAGGAAAAACGCTTCCATCGA
AAATCTGTTTATCAATTGGCAACCTTAAGATTTGGTTTTTCTGAACTCAA
GGAGACGAAAAACCAGCTGATTTGCaattatttggaaaatttcattGACA
CTTTGGCGGCCTTGCAGAATTTGCCTGGTGCATACATTGAAAGGGGGATT
ATGTCTCAAACTAAGCGTTGTTGGAATTTCCCAACCTTTAATTGGGGAAG
AATGGTTAAAGAAGCGGTCAACGCTTcgaaattaaataaagaaatgATGG
GGAAGTTGAGACAAAACTGGNTAATGCTAACTTGAAGTTGATGTTTGTTG
CAGAAATTTATAATGAATGTATGATACACCTGACGTCATTTCTATCACTG
CTTTTCCATGAAGATAAAGATAACAATTTATCAAAGGATTATCTCTTCCT
TCTAAAATCAGTTTATCAATTGGCAACCTTAAGATTTGGTTTTTCTGAAC
TCAAGGAGACGAAAAACCAGCTGATTTGCaattatttggaaaatttcatt
GACACTTTGGCGGCCTTGCAGAATTTGCCTGGTGCATACATTGAAAGGGG
GATTATGTCTCAAACTAAGCGTTGTTGGAATTTCCCAACCTTTAATTGGG
GAAGAATGGTTAAAGAAGCGGTCAACGCTTcgaaattaaataaagaaatg
ATGGGGAAGTTGAGACAAAACAGGATAGTGACTGAACTGCTTAATGATGC
ATGTTCTGATATTAAGTTGGGAATGGAACGAggagaaattcttttgaatG
AAGAGTTTGATGCTGTCAAGACTTTTCAATGTACAAAATGCAATGCATCT
TTCTTTTGTAGTTATGAAGAAACATTAGAAGGTCCTGTTGAACTGTTTCG
AAAGATGTATGAAGTCCATATGAAAAATCTTCATGAAATGGCCGACAAGG
GGGTTAAAGAACAGGATTTACGAACACAGGAAATGCAAGAACAACATCAA
TTAGAAGAACGCCAACATGAGGAAATCGAGAAATCACGAAAACGAAAATA
TGATGATGGCGATGAAGACTAAACTGTAAAAAGAGGACCAATAAACGTGG
TCGATATTccttttcctttgttttcctCTTCAGATCGTGGTGCTGGCGGA
TTGGACGATTTGTTGCTAGATTTGGGATATTCGCTCATTTTTCTAGGATA
TTTAAATGCAATCTCGAGCAACATTGCTCTATTCTGAATGCATTCTACAT
TCTACAAGATTCTGTCAAGAGatctttcaaactttcattaTTGCTGATAA
GTGGATGGCATAGATAATTGACAGGGTGTAATATATAGTATTCTTGATTT
TGTAACTTAGTTTGATCACGCAGAAAATGTATGCTACTAGATCCAGTCtc
ttttttggagaaaaacctgggggggtactagggttgcgagctgacggggg
ggtgccgcccgactttcgaactttgaacccttaccgggactaaaaaggag
aaaacaaaggaaaattttgggaattttacgacccttagcgggacaaattt
gactaatttttaccaaatttcgatctttcacggagtaaaaattttcctat
ttttcctacccttagtgggactgaaatttgattttctgatttttccgacc
cttagctgGACTCTGGAAGtgcaaaaaaggtacccttaagggcggc

Run BLAST on NCBI

transcript from alignment at sc0000066:641594..643989-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006325 ID=TCONS_00006325|Name=TCONS_00006325|organism=Clytia hemisphaerica|type=transcript|length=2396bp|location=Sequence derived from alignment at sc0000066:641594..643989- (Clytia hemisphaerica)
GTTCCTGATACCGAAAAGTCATCCTGAAAGTCAAAACCCGATGGTTGAAT
GGAGATTGTCATTTTCATTGGTCGAGAAAGAAATTCTCCTAAATCTCCCA
TTGTCCTGGAGAAAGGTTTATTTGATCATAAAATCTCAATTCAAAGAATC
TCACGAGCAATCTTTTNATTCAAAGAGTTCCACGAGCAACCCTTTAGGAG
AAGGATAGAGAATGGCCGGGAAATATTACCAGATCAACAGTATTACCAAA
GTCCGTTGGAAAGTTATCACATCAAAACAGTTTTACTGTGGCTTTACGAG
AAACATACTGACTTTGATGAAAATGATATCATAGGATTATTGAAACTTGT
TGTCGATCGTTTATTAGAAGCATTCTCGGAGATGAAGCTGCCAAACTATT
TCATACCGGGTCAAAATATTTTGAGAAATGCACAAAAATATGATTTTTAT
AAAATTGAGAGAGTCAAAGAAATGTTAGAAAAGATCAAGCTCGTCGATAA
TCTTATGTTCCTTTATATAAGGGGATCGATGCTAAACCAGGATTATAGAA
AAACATCATTCACAACCTCTAGAGCAACAAAACTAAAAGAAAATGGATTT
CTAGACAACATACCTGATAATGCTAACTTGAAGTTGATGTTTGTTGCAGA
AATTTATAATGAATGTATGATACACCTGACGTCATTTCTATCACTGCTTT
TCCATGAGGATAAAGATAACGATTTATCAAAGGAAAAACGCTTCCATCGA
AAATCTGTTTATCAATTGGCAACCTTAAGATTTGGTTTTTCTGAACTCAA
GGAGACGAAAAACCAGCTGATTTGCAATTATTTGGAAAATTTCATTGACA
CTTTGGCGGCCTTGCAGAATTTGCCTGGTGCATACATTGAAAGGGGGATT
ATGTCTCAAACTAAGCGTTGTTGGAATTTCCCAACCTTTAATTGGGGAAG
AATGGTTAAAGAAGCGGTCAACGCTTCGAAATTAAATAAAGAAATGATGG
GGAAGTTGAGACAAAACTGGNTAATGCTAACTTGAAGTTGATGTTTGTTG
CAGAAATTTATAATGAATGTATGATACACCTGACGTCATTTCTATCACTG
CTTTTCCATGAAGATAAAGATAACAATTTATCAAAGGATTATCTCTTCCT
TCTAAAATCAGTTTATCAATTGGCAACCTTAAGATTTGGTTTTTCTGAAC
TCAAGGAGACGAAAAACCAGCTGATTTGCAATTATTTGGAAAATTTCATT
GACACTTTGGCGGCCTTGCAGAATTTGCCTGGTGCATACATTGAAAGGGG
GATTATGTCTCAAACTAAGCGTTGTTGGAATTTCCCAACCTTTAATTGGG
GAAGAATGGTTAAAGAAGCGGTCAACGCTTCGAAATTAAATAAAGAAATG
ATGGGGAAGTTGAGACAAAACAGGATAGTGACTGAACTGCTTAATGATGC
ATGTTCTGATATTAAGTTGGGAATGGAACGAGGAGAAATTCTTTTGAATG
AAGAGTTTGATGCTGTCAAGACTTTTCAATGTACAAAATGCAATGCATCT
TTCTTTTGTAGTTATGAAGAAACATTAGAAGGTCCTGTTGAACTGTTTCG
AAAGATGTATGAAGTCCATATGAAAAATCTTCATGAAATGGCCGACAAGG
GGGTTAAAGAACAGGATTTACGAACACAGGAAATGCAAGAACAACATCAA
TTAGAAGAACGCCAACATGAGGAAATCGAGAAATCACGAAAACGAAAATA
TGATGATGGCGATGAAGACTAAACTGTAAAAAGAGGACCAATAAACGTGG
TCGATATTCCTTTTCCTTTGTTTTCCTCTTCAGATCGTGGTGCTGGCGGA
TTGGACGATTTGTTGCTAGATTTGGGATATTCGCTCATTTTTCTAGGATA
TTTAAATGCAATCTCGAGCAACATTGCTCTATTCTGAATGCATTCTACAT
TCTACAAGATTCTGTCAAGAGATCTTTCAAACTTTCATTATTGCTGATAA
GTGGATGGCATAGATAATTGACAGGGTGTAATATATAGTATTCTTGATTT
TGTAACTTAGTTTGATCACGCAGAAAATGTATGCTACTAGATCCAGTCTC
TTTTTTGGAGAAAAACCTGGGGGGGTACTAGGGTTGCGAGCTGACGGGGG
GGTGCCGCCCGACTTTCGAACTTTGAACCCTTACCGGGACTAAAAAGGAG
AAAACAAAGGAAAATTTTGGGAATTTTACGACCCTTAGCGGGACAAATTT
GACTAATTTTTACCAAATTTCGATCTTTCACGGAGTAAAAATTTTCCTAT
TTTTCCTACCCTTAGTGGGACTGAAATTTGATTTTCTGATTTTTCCGACC
CTTAGCTGGACTCTGGAAGTGCAAAAAAGGTACCCTTAAGGGCGGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003607	XLOC_003607	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006325-exon-sc0000066-1575043694:641594..643989	TCONS_00006325-exon-sc0000066-1575043694:641594..643989	Clytia hemisphaerica	exon
TCONS_00006325-exon-sc0000066-1510915933:641594..643989	TCONS_00006325-exon-sc0000066-1510915933:641594..643989	Clytia hemisphaerica	exon
TCONS_00006325-exon-sc0000066-1491911889:641594..643989	TCONS_00006325-exon-sc0000066-1491911889:641594..643989	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000066	supercontig	sc0000066:641594..643989 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221318	0.454576	0.661423	0.551796	6.92491	4.7229	2.35676	2.58642	1.00334	3.62896	0.66505	0.727453	1.97642	1.20566	0.799806	0.766578	0.501149	1.26693	1.41601	1.37714	0.546425	0.59152	1.06967	0.847459	1.43067	1.72576	2.60656	1.32281	2.51562	1.7895

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00006325 vs. Swiss-Prot (Human)

BLAST of TCONS_00006325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00006325 (transcript) - C. hemisphaerica