TCONS_00006325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006325
Unique NameTCONS_00006325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006325 ID=TCONS_00006325|Name=TCONS_00006325|organism=Clytia hemisphaerica|type=transcript|length=2396bp
GTTCCTGATACCGAAAAGTCATCCTGAAAGTCAAAACCCGATGGTTGAAT
GGAGATTGTCATTTTCATTGGTCGAGAAAGAAATTCTCCTAAATCTCCCA
TTGTCCTGGAGAAAGGTTTATTTGATCATAAAATCTCAATTCAAAGAATC
TCACGAGCAATCTTTTNATTCAAAGAGTTCCACGAGCAACCCTTTAGGAG
AAGGATAGAGAATGGCCGGGAAATATTACCAGATCAACAGTATTACCAAA
GTCCGTTGGAAAGTTAtcacatcaaaacagttttacTGTGGCTTTACGAG
AAACATACTgactttgatgaaaatgatatcaTAGGATTATTGAAACTTGT
TGTCGATCGTTTATTAGAAGCATTCTCGGAGATGAAGCTGCCAAACTATT
TCATAccgggtcaaaatattttgagaaatgcacaaaaatatgatttttat
aaaattgagaGAGTCAAAGAAATGTTAGAAAAGATCAAGCTCGTCGATAA
TCTTATGTTCCTTTATATAAGGGGATCGATGCTAAACCAGGATTATAGAA
AAACATCATTCACAACCTCTAGAGCAacaaaactaaaagaaaatgGATTT
CTAGACAACATACCTGATAATGCTAACTTGAAGTTGATGTTTGTTGCAGA
AATTTATAATGAATGTATGATACACCTGACGTCATTTCTATCACTGCTTT
TCCATGAGGATAAAGATAACGATTTATCAAAGGAAAAACGCTTCCATCGA
AAATCTGTTTATCAATTGGCAACCTTAAGATTTGGTTTTTCTGAACTCAA
GGAGACGAAAAACCAGCTGATTTGCaattatttggaaaatttcattGACA
CTTTGGCGGCCTTGCAGAATTTGCCTGGTGCATACATTGAAAGGGGGATT
ATGTCTCAAACTAAGCGTTGTTGGAATTTCCCAACCTTTAATTGGGGAAG
AATGGTTAAAGAAGCGGTCAACGCTTcgaaattaaataaagaaatgATGG
GGAAGTTGAGACAAAACTGGNTAATGCTAACTTGAAGTTGATGTTTGTTG
CAGAAATTTATAATGAATGTATGATACACCTGACGTCATTTCTATCACTG
CTTTTCCATGAAGATAAAGATAACAATTTATCAAAGGATTATCTCTTCCT
TCTAAAATCAGTTTATCAATTGGCAACCTTAAGATTTGGTTTTTCTGAAC
TCAAGGAGACGAAAAACCAGCTGATTTGCaattatttggaaaatttcatt
GACACTTTGGCGGCCTTGCAGAATTTGCCTGGTGCATACATTGAAAGGGG
GATTATGTCTCAAACTAAGCGTTGTTGGAATTTCCCAACCTTTAATTGGG
GAAGAATGGTTAAAGAAGCGGTCAACGCTTcgaaattaaataaagaaatg
ATGGGGAAGTTGAGACAAAACAGGATAGTGACTGAACTGCTTAATGATGC
ATGTTCTGATATTAAGTTGGGAATGGAACGAggagaaattcttttgaatG
AAGAGTTTGATGCTGTCAAGACTTTTCAATGTACAAAATGCAATGCATCT
TTCTTTTGTAGTTATGAAGAAACATTAGAAGGTCCTGTTGAACTGTTTCG
AAAGATGTATGAAGTCCATATGAAAAATCTTCATGAAATGGCCGACAAGG
GGGTTAAAGAACAGGATTTACGAACACAGGAAATGCAAGAACAACATCAA
TTAGAAGAACGCCAACATGAGGAAATCGAGAAATCACGAAAACGAAAATA
TGATGATGGCGATGAAGACTAAACTGTAAAAAGAGGACCAATAAACGTGG
TCGATATTccttttcctttgttttcctCTTCAGATCGTGGTGCTGGCGGA
TTGGACGATTTGTTGCTAGATTTGGGATATTCGCTCATTTTTCTAGGATA
TTTAAATGCAATCTCGAGCAACATTGCTCTATTCTGAATGCATTCTACAT
TCTACAAGATTCTGTCAAGAGatctttcaaactttcattaTTGCTGATAA
GTGGATGGCATAGATAATTGACAGGGTGTAATATATAGTATTCTTGATTT
TGTAACTTAGTTTGATCACGCAGAAAATGTATGCTACTAGATCCAGTCtc
ttttttggagaaaaacctgggggggtactagggttgcgagctgacggggg
ggtgccgcccgactttcgaactttgaacccttaccgggactaaaaaggag
aaaacaaaggaaaattttgggaattttacgacccttagcgggacaaattt
gactaatttttaccaaatttcgatctttcacggagtaaaaattttcctat
ttttcctacccttagtgggactgaaatttgattttctgatttttccgacc
cttagctgGACTCTGGAAGtgcaaaaaaggtacccttaagggcggc
Run BLAST on NCBI

transcript from alignment at sc0000066:641594..643989-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006325 ID=TCONS_00006325|Name=TCONS_00006325|organism=Clytia hemisphaerica|type=transcript|length=2396bp|location=Sequence derived from alignment at sc0000066:641594..643989- (Clytia hemisphaerica)
GTTCCTGATACCGAAAAGTCATCCTGAAAGTCAAAACCCGATGGTTGAAT GGAGATTGTCATTTTCATTGGTCGAGAAAGAAATTCTCCTAAATCTCCCA TTGTCCTGGAGAAAGGTTTATTTGATCATAAAATCTCAATTCAAAGAATC TCACGAGCAATCTTTTNATTCAAAGAGTTCCACGAGCAACCCTTTAGGAG AAGGATAGAGAATGGCCGGGAAATATTACCAGATCAACAGTATTACCAAA GTCCGTTGGAAAGTTATCACATCAAAACAGTTTTACTGTGGCTTTACGAG AAACATACTGACTTTGATGAAAATGATATCATAGGATTATTGAAACTTGT TGTCGATCGTTTATTAGAAGCATTCTCGGAGATGAAGCTGCCAAACTATT TCATACCGGGTCAAAATATTTTGAGAAATGCACAAAAATATGATTTTTAT AAAATTGAGAGAGTCAAAGAAATGTTAGAAAAGATCAAGCTCGTCGATAA TCTTATGTTCCTTTATATAAGGGGATCGATGCTAAACCAGGATTATAGAA AAACATCATTCACAACCTCTAGAGCAACAAAACTAAAAGAAAATGGATTT CTAGACAACATACCTGATAATGCTAACTTGAAGTTGATGTTTGTTGCAGA AATTTATAATGAATGTATGATACACCTGACGTCATTTCTATCACTGCTTT TCCATGAGGATAAAGATAACGATTTATCAAAGGAAAAACGCTTCCATCGA AAATCTGTTTATCAATTGGCAACCTTAAGATTTGGTTTTTCTGAACTCAA GGAGACGAAAAACCAGCTGATTTGCAATTATTTGGAAAATTTCATTGACA CTTTGGCGGCCTTGCAGAATTTGCCTGGTGCATACATTGAAAGGGGGATT ATGTCTCAAACTAAGCGTTGTTGGAATTTCCCAACCTTTAATTGGGGAAG AATGGTTAAAGAAGCGGTCAACGCTTCGAAATTAAATAAAGAAATGATGG GGAAGTTGAGACAAAACTGGNTAATGCTAACTTGAAGTTGATGTTTGTTG CAGAAATTTATAATGAATGTATGATACACCTGACGTCATTTCTATCACTG CTTTTCCATGAAGATAAAGATAACAATTTATCAAAGGATTATCTCTTCCT TCTAAAATCAGTTTATCAATTGGCAACCTTAAGATTTGGTTTTTCTGAAC TCAAGGAGACGAAAAACCAGCTGATTTGCAATTATTTGGAAAATTTCATT GACACTTTGGCGGCCTTGCAGAATTTGCCTGGTGCATACATTGAAAGGGG GATTATGTCTCAAACTAAGCGTTGTTGGAATTTCCCAACCTTTAATTGGG GAAGAATGGTTAAAGAAGCGGTCAACGCTTCGAAATTAAATAAAGAAATG ATGGGGAAGTTGAGACAAAACAGGATAGTGACTGAACTGCTTAATGATGC ATGTTCTGATATTAAGTTGGGAATGGAACGAGGAGAAATTCTTTTGAATG AAGAGTTTGATGCTGTCAAGACTTTTCAATGTACAAAATGCAATGCATCT TTCTTTTGTAGTTATGAAGAAACATTAGAAGGTCCTGTTGAACTGTTTCG AAAGATGTATGAAGTCCATATGAAAAATCTTCATGAAATGGCCGACAAGG GGGTTAAAGAACAGGATTTACGAACACAGGAAATGCAAGAACAACATCAA TTAGAAGAACGCCAACATGAGGAAATCGAGAAATCACGAAAACGAAAATA TGATGATGGCGATGAAGACTAAACTGTAAAAAGAGGACCAATAAACGTGG TCGATATTCCTTTTCCTTTGTTTTCCTCTTCAGATCGTGGTGCTGGCGGA TTGGACGATTTGTTGCTAGATTTGGGATATTCGCTCATTTTTCTAGGATA TTTAAATGCAATCTCGAGCAACATTGCTCTATTCTGAATGCATTCTACAT TCTACAAGATTCTGTCAAGAGATCTTTCAAACTTTCATTATTGCTGATAA GTGGATGGCATAGATAATTGACAGGGTGTAATATATAGTATTCTTGATTT TGTAACTTAGTTTGATCACGCAGAAAATGTATGCTACTAGATCCAGTCTC TTTTTTGGAGAAAAACCTGGGGGGGTACTAGGGTTGCGAGCTGACGGGGG GGTGCCGCCCGACTTTCGAACTTTGAACCCTTACCGGGACTAAAAAGGAG AAAACAAAGGAAAATTTTGGGAATTTTACGACCCTTAGCGGGACAAATTT GACTAATTTTTACCAAATTTCGATCTTTCACGGAGTAAAAATTTTCCTAT TTTTCCTACCCTTAGTGGGACTGAAATTTGATTTTCTGATTTTTCCGACC CTTAGCTGGACTCTGGAAGTGCAAAAAAGGTACCCTTAAGGGCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003607XLOC_003607Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006325-exon-sc0000066-1575043694:641594..643989TCONS_00006325-exon-sc0000066-1575043694:641594..643989Clytia hemisphaericaexon
TCONS_00006325-exon-sc0000066-1510915933:641594..643989TCONS_00006325-exon-sc0000066-1510915933:641594..643989Clytia hemisphaericaexon
TCONS_00006325-exon-sc0000066-1491911889:641594..643989TCONS_00006325-exon-sc0000066-1491911889:641594..643989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:641594..643989 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221318 0.454576 0.661423 0.551796 6.92491 4.7229 2.35676 2.58642 1.00334 3.62896 0.66505 0.727453 1.97642 1.20566 0.799806 0.766578 0.501149 1.26693 1.41601 1.37714 0.546425 0.59152 1.06967 0.847459 1.43067 1.72576 2.60656 1.32281 2.51562 1.7895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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