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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006315 ID=TCONS_00006315|Name=TCONS_00006315|organism=Clytia hemisphaerica|type=transcript|length=972bp
GATTCAATATATCATGCCACTATGTGTGGTCATCTCCTTCATCTATTCGG
TGGCCATTTTGGTTCAAAGTATCGTCTATGAGAAAGAACAACGTTTGAAA
GAAGTAATGAAAATGATGGGTTTAAGTAATACAGTNTCCTTCATTTATTC
GGTGGCCATTTTGGTTCAAAGTATCGTCTATGAGAAAGAACAACGTTTGA
AAGAAGTAATGAAAATGATGGGTTTAAGTAATACAGTTCATTGGGCTGCT
TGGTTTATTACCAGTATCGTTGGAATGTTGACCATTGTTATTTTACTGAC
CATTGTCCTCAAGaCTGGTCATATCTTACCGAACAGCAATAGTTACATTA
TCTTCGTCTTCTTAACACTGGCTGCCATAGCAACCATAATGTTCTGCTTT
TTAATCAGCattttcttctcaaaagcaaAGTTAGCGGCAGCATGCGGAGG
AATCATTTATTTTGTGACCTACATGCCTTACATCTTTATCTCAATACAAG
AAGGAGGCAGCAACCATATTGATGTTAGCTCAAATTTCAAGACAGTGGCT
AGCCTGTTTTCGACGACGGCTTTTGGATTAGGGGCTAgatattttgcttt
gtttgAGCAGAATGGCGTGGGATTGCAATGGAGTAACCTCTCCATGAGTC
CGATCTACAAAAAAGGCTCACAGCCGGCCATCGACCATCTCTCCCTAAAC
TTATACGAAAATCAAATCACTTCATTTCTCGGTCATAATGGAGCCGGTAA
AACGACGACCATGTCCCTTCTGACTGGCCTTTTCCCGTCGACGTCTGGGA
CGGCTTATATTTATGGTAAAGATATACATACAGATATGGATTCTGTACGC
AAAAGCCTTGGATTGTGTCCTCAACACAATATACTGTATGACAGGTTGAC
AGTGGAAGAATCACTCTGGTTTTATGCAAGGTTGAAAGGGATGTCAGACA
AGAAACAAGTGAAATATGAAAT Run BLAST on NCBI transcript from alignment at sc0000066:590188..593927- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006315 ID=TCONS_00006315|Name=TCONS_00006315|organism=Clytia hemisphaerica|type=transcript|length=3740bp|location=Sequence derived from alignment at sc0000066:590188..593927- (Clytia hemisphaerica)
GATTCAATATATCATGCCACTATGTGTGGTCATCTCCTTCATCTATTCGG
TGGCCATTTTGGTTCAAAGTATCGTCTATGAGAAAGAACAACGTTTGAAA
GAAGTAATGAAAATGATGGGTTTAAGTAATACAGTNTCCTTCATTTATTC
GGTGGCCATTTTGGTTCAAAGTATCGTCTATGAGAAAGAACAACGTTTGA
AAGAAGTAATGAAAATGATGGGTTTAAGTAATACAGTTCATTGGGCTGCT
TGGTTTATTACCAGTATCGTTGGAATGTTGACCATTGTTATTTTACTGAC
CATTGTCCTCAAGGTGAGTGTGTGTAATTTCTCTTTTTGTATTCTGACGA
GGATATAAATATGATTTGGTGTATTACTTGTGTGTAAGGCTGACACATTA
TAACCCTTCGTGTAAACCAGCTGTCAGGCTATCAGGCTATTAATTTCTGA
GCAGATTCCGATTATTCCACGCATGGTACGTATGCATTCTAAAGGTCATG
GCTCCTTAAGAGAACCATAAATTTGTTTATATTTGATATCCTCAAAGATT
TTTGTCGTCTATTCCTTCTCTTCGTTTCATCAGAAAATAAATTGTTAAAA
CTGTGTTTAGCCGAATTATTCTTTCCATTTTCTCAATTTCCAGACTGGTC
ATATTTTACCGAACNACATTTTCAGGCAGTCAGAATTTCTCTGAAGCAAT
ATGTAAATTCATGAACTTGGGCTAATCTAAGTTTTTTTTACATTTTCAGA
CTGGTCATATCTTACCGAACAGCAATAGTTACATTATCTTCGTCTTCTTA
ACACTGGCTGCCATAGCAACCATAATGTTCTGCTTTTTAATCAGCATTTT
CTTCTCAAAAGCAAAGTTAGCGGCAGCATGCGGAGGAATCATTTATTTTG
TGACCTACATGCCTTACATCTTTATCTCAATACAAGAAGGAGGCAGCAAC
CATATTGATGTTAGCTCAAATTTCAAGACAGTGGCTAGCCTGTTTTCGAC
GACGGCTTTTGGATTAGGGGCTAGATATTTTGCTTTGTTTGAGCAGAATG
GCGTGGGATTGCAATGGAGTAACCTCTCCATGAGTCCGGTAAGATTTTTC
TAATCCTACAGTAGGAGTCATCATACACGCTTTTTTTTTTATAAGAATGA
TGTTTCATTTCATGTTTATCATGGATATGCTTAACTTTTTGGGGAAAATC
ATCCTAAAATATTCTTAGGCTATTTTCTTAGGTTAGGGTCGAAATTCAAC
CAAAATTTAACAAGAAATACACACCTGAAGCAAAAAATGGCATTTTTATG
AACGTTTAAAGCCTTACTGGGGGAAAACTGGCAACTTACAGTTAAAATTG
CTCTGTAAATGACATTCTTAGGTTTTATTTTTAGAATATTCCTAATTTTC
ATAAACATTCTTATAAAGTATATTCTCGTAACAAAAAACTATGTACTTTG
ACTCTCTGTAAACTGAAATGTCACTCTAACAAAAGGCTCCTAGTACACTC
AGGTAAAAATAATGCTCTATAATCAAGTCTAAATTTTCCATAATTCGAAC
TTATTTAAATTTCCCGTGCTTGTTCGTACTGCATTTTTGATTTTGATATT
ATTTAGTAGTTCAATTCTCAGCTATTGTTGGATGATTTATGTCTCAGAAA
CCATGAAATTGATACAGCATACCGCTCCAAACAGAAAATAGCTCATTTGT
TGTCATCATGCCTTCGACTCCAAGATGTGTTCGTTTCACTGTTACAAGTA
ATGATTTCCAAACACGAAACTCCTTGGTGGAAAATCCTTGAAAGTTAAAC
TCATCGCCAGACTTCGAAAAATATATCGCTTTAAAACAAAAGGCTAGATT
CAATCCGTCACTCTAAATGCGGCGCAAATCTTAAGGTTTTACTTTTTCTT
TCTTGAAAAAGAATGAAGATTCCTCTCAAGCCTTCTTCGACTTGAAACTC
GGTGGTTACAATCTACATTTTTCTTGTTCTTATTATAGCTTGAAGGTGAC
GATTTCAACATGAGAAAAGTGTTCACAATGTTATTAGCTGATACTTTTAT
TTACGCTATTCTCGTTTGGTACATCGAGTCCATTCACCCAGGGACGTATG
GAATACCGAGACCGTGGTATTTCCCTTTTCAATTGTCTTATTGGTTTGGT
CCGCAGGCTAGTTTAGACTGTGAAATGGATTGTTTTAAGAAATCATATAA
AATGGCGGGAAATTCGGAACAAAACACAGCAGCCTTGCTGGCGGTTGAAA
CTGAACCAACGCATTTGAAGTTGGGCGTGGCTATCAAAAATCTACTCAAG
GTTTGTTTGCTTTCATTGTTAATTTGAGCAAGTGTGTAGTATTTTTTTAC
GTATCATTATTAATTAGTCAAATTAGAGAGCCTTGTCATTCGTGGAATTT
CAACTTCAATTCATTCGAATGATCGACTAATGATGAAAAACCATAAGTCT
TCATCTTTTGAAACATTCATCACCGTTCTCTGGAGATTTGGGCACAAGAT
GACATCCATGATTCTCTAAACGAATTCGATTTTGATGTCGGTGTTCTCAA
TTCGAAATTTGATTAGGCCAATCAATGCCATGTACTGGGTCGAAATTCCT
GAAGGCCGAGATTATACGGTAAACTGAATGTCTTAGCAACACTACCAGCC
AGCACCGATTCGATATTATCCAAGAAAACCGGATTACAAGCCTTTTGTAA
TGGTTCATAAAGTTGTGTTTTTGAATGTTGCTCGACTCGATCAAGTGAAT
CTACGACACAATTATAGCCACATAATAAATCAGAAGAAAAGAAAGTTTGT
GTAACTACAGTAATTCGTGTTTAACTGTTAAGGGGGGGATATTAATTTAC
CCCTGTCTTTCTCTCCTTCAGATCTACAAAAAAGGCTCACAGCCGGCCAT
CGACCATCTCTCCCTAAACTTATACGAAAATCAAATCACTTCATTTCTCG
GTCATAATGGAGCCGGTAAAACGACGACCATGTCCCTTCTGACTGGCCTT
TTCCCGTCGACGTCTGGGACGGCTTATATTTATGGTAAAGATATACATAC
AGATATGGATTCTGTACGCAAAAGCCTTGGATTGTGTCCTCAACACAATA
TACTGTATGACAGGTGAGTGTCGATAAAGTCCTCTAATTTTATTTGGTGA
ACTAAATCATTTATTATTTACTTTTCATTCGCTTAATATATCGCACATAA
ATTCTATATGAAATGCAAGCATGGGTCCAGCTCGACTAGAGAAGATTTTT
TTACTTTCTTCACTACAATATTAATTCACTACTATATTCACCACTATATT
AATTCTCCTCTGTCTTTCTTCCTGTGCCAAAGACCCGCTAGGACCCCAGC
TAGCCCCACTGGAAAATGACTTTGATTTCATCCTTATTCCCATTCCAAAT
TCAATATGAAAAACTTCACTCCAAACCATCCCCAGTGGATTTTTCAACTG
AGGAACATTAGAATTTTCATCCCCATTGGGGTTTCCATAGAAAACTTTAT
CTTTGCTGTGGTAAAAAGCTTCACCGGGGCTGTGAGACTCAGGGGTGTCG
GGCTGTGAGACATGGGTGTCTCATTCATTGAATAAACGGCATGAAATTCC
ATACTAACGATGTCCAAACAAATAAAGAATATATTGATAATTATCACTGC
ATTTCATTGTAGGTTGACAGTGGAAGAATCACTCTGGTTTTATGCAAGGT
TGAAAGGGATGTCAGACAAGAAACAAGTGAAATATGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006315-exon-sc0000066-1575043694:593615..593927 | TCONS_00006315-exon-sc0000066-1575043694:593615..593927 | Clytia hemisphaerica | exon |
| TCONS_00006315-exon-sc0000066-1575043694:592840..593178 | TCONS_00006315-exon-sc0000066-1575043694:592840..593178 | Clytia hemisphaerica | exon |
| TCONS_00006315-exon-sc0000066-1575043694:590815..591056 | TCONS_00006315-exon-sc0000066-1575043694:590815..591056 | Clytia hemisphaerica | exon |
| TCONS_00006315-exon-sc0000066-1575043694:590188..590265 | TCONS_00006315-exon-sc0000066-1575043694:590188..590265 | Clytia hemisphaerica | exon |
| TCONS_00006315-exon-sc0000066-1510915933:593615..593927 | TCONS_00006315-exon-sc0000066-1510915933:593615..593927 | Clytia hemisphaerica | exon |
| TCONS_00006315-exon-sc0000066-1510915933:592840..593178 | TCONS_00006315-exon-sc0000066-1510915933:592840..593178 | Clytia hemisphaerica | exon |
| TCONS_00006315-exon-sc0000066-1510915933:590815..591056 | TCONS_00006315-exon-sc0000066-1510915933:590815..591056 | Clytia hemisphaerica | exon |
| TCONS_00006315-exon-sc0000066-1510915933:590188..590265 | TCONS_00006315-exon-sc0000066-1510915933:590188..590265 | Clytia hemisphaerica | exon |
| TCONS_00006315-exon-sc0000066-1491911889:593615..593927 | TCONS_00006315-exon-sc0000066-1491911889:593615..593927 | Clytia hemisphaerica | exon |
| TCONS_00006315-exon-sc0000066-1491911889:592840..593178 | TCONS_00006315-exon-sc0000066-1491911889:592840..593178 | Clytia hemisphaerica | exon |
| TCONS_00006315-exon-sc0000066-1491911889:590815..591056 | TCONS_00006315-exon-sc0000066-1491911889:590815..591056 | Clytia hemisphaerica | exon |
| TCONS_00006315-exon-sc0000066-1491911889:590188..590265 | TCONS_00006315-exon-sc0000066-1491911889:590188..590265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:590188..593927 - |
Blast
BLAST of TCONS_00006315 vs. Swiss-Prot (Human)
Match: ABCA2 (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3) HSP 1 Score: 204.142 bits (518), Expect = 1.010e-57 Identity = 109/225 (48.44%), Postives = 155/225 (68.89%), Query Frame = 2
Query: 2 IQYIMPLCVVISFIYSVAILVQSIV-------YEKEQRLKEVMKMMGLSNTVSFIYSVAILVQSIVYEKEQRLKEVMKMMGLSNTVHWAAWFITSIVGMXXXXXXXXXXXKTGHILPNSNSYIIFVFLTLAAIATIMFCFLISIFFSKAKLAAACGGIIYFVTYMPYIFISIQEGGSNHIDVSSNFKTVASLFSTTAFGLGARYFALFEQNGVGLQWSNLSMSPI 655
IQ +M ++ +F+ + S V Y ++ L + MM L +S++YSVA+ +Q IV EKE RLKEVMK MGL+N VHW AWFIT V + V LT +LK G +L +S+ II++FL + A+ATIMFCFL+S+ +SKAKLA+ACGGIIYF++Y+PY++++I+E + H +++ K +ASL STTAFGLG++YFAL+E GVG+QW S SP+
Sbjct: 662 IQDMMERAIIDTFVGHDVVEPGSYVQMFPYPCYTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVVIIWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVA-HDKITAFEKCIASLMSTTAFGLGSKYFALYEVAGVGIQWHTFSQSPV 885 HSP 2 Score: 163.31 bits (412), Expect = 1.008e-43 Identity = 71/109 (65.14%), Postives = 93/109 (85.32%), Query Frame = 2
Query: 644 MSPIYKKGSQPAIDHLSLNLYENQITSFLGHNGAGKTTTMSLLTGLFPSTSGTAYIYGKDIHTDMDSVRKSLGLCPQHNILYDRLTVEESLWFYARLKGMSDKKQVKYE 970
++ +YK + A++ LSLNLYENQ+ SFLGHNGAGKTTTMS+LTGLFP TSG+A IYG DI T+MD +RK+LG+CPQHN+L+DRLTVEE LWFY+RLK M+ +++++ E
Sbjct: 995 LTKVYKDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMA-QEEIRRE 1102 HSP 3 Score: 82.0333 bits (201), Expect = 5.086e-17 Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 2
Query: 677 AIDHLSLNLYENQITSFLGHNGAGKTTTMSLLTGLFPSTSGTAYIYGKDIHTDMDSVRKSLGLCPQHNILYDRLTVEESLWFYARLKGMSDKKQVK 964
A+D L L + + LG NGAGKT+T +LTG +T G A++ G + ++ V++SLG CPQ + L+D LT E L Y RL+G+S K + +
Sbjct: 2069 AVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEAR 2164
The following BLAST results are available for this feature:
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