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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006300 ID=TCONS_00006300|Name=TCONS_00006300|organism=Clytia hemisphaerica|type=transcript|length=2334bp
GTATTGTTTCCCCTTAAACAATAGGCTCCTTTCTTCCCACTTACAAAAGT
TTAAAATAGATtgtgaatttaaaaaagatgaTATGAAGTTCAACTCTGAT
CGCCTTTcggtctttcttttctttctttccaaATCCTCGGGAGAAGGTGG
ATAAATTACTGACCGCAAAGTTTTTGCAACTGACCCAAGGTTACAGCAGA
GAAAGGGAGATCTCTCATTTTATCATACTCAAGAGATTAAGAAGATTCTC
AGTCCAACAATTGCTTGAGATTTTGTTATACACAAATAAATTTGTTCATT
GTGTTCAATGTATTGCGAGAAGCAAGGTGCTGGCCTGCTGCGTATATAAA
TTGGTAGGGTCGAAAAAGCTGAAGTTATTTCGCTCTCATACTGCTGGCCA
GTGAATATCAACTGAATGCAAAGAGAAAAGAGGAGTTTAAACATTCACTG
TTTTCGAAGGCGTGTGAACACATCAACTTATTGGTGCAGTGGGAAGCTTA
CAGCGTGTGCAGAGTCAACGGTGCTGTTCCTAAGAATTACAACATCAAGC
AGCTTCGCGGAGTAAGCGGCACTGAGATTGAACAGTTTACAACCTCTAAC
TTAATATAAACATTGAGCACCAGACGTCGCACCGCGATGAGTGATACTTA
TGATAGCGCATATCGTGGTTTGAGGCAAAACACTTCGACAGCAGTTGGAC
AGATCGCAACTACTTTATACAATGGATTGCAAGGCGCCACCAACAACAAC
ACAACTTACCACAACACATCGCTACACTCCAATTGTGGTGCTTCTTCGGC
CGCAGCGCTCGCTTCGAATTATCTTTCACACACAGACTACATGTCACCTA
CATCCCACTTAACACCGAAGCAAGACTCAACAACCGCTCATCATTTATCA
CAGAGTCTTACCAACAGCGCCACAAATCTCCCATACTATGACTCCATGAG
TGCCAACACCTCCAACACAACTGGTTTTGGAGTATCCTCGGGCAAATACT
CGCCACACTCTTACCGATCTTCGTCGTCATCTTCTTACTCACAttaccaa
aaccaaaacaacaaCCAATTGACCAACAACCATAGTTTGAATGGAGGTGC
GTCTACAACAACCGATCTCTCATCCAACACGCATCCATACTACTCCTCCT
TCATACCACCTCCACCGACCACCAGATCTTCGTATCCAACATCCAGCTTT
GCACATTCACCTTACTCTCTAGATTCTGATTTCTGTGGACGTACAGCTCG
CTATGGTTCCAATTCACCAGGTAGTCTCCATAACCAATACCTTGATCAAT
CACTTCTTCACCAAGTCACCGCACCAGGGATGTTCTATCCATACATTCGA
CCACATCCTGGCAGCAACTATATCATGACGTGTATGTGGATTGAACAGCA
TGGTTTCGCCAAACTCAAACCGTGCGGACGTCAATTCACAACGATGCAAG
ATATCGTCAACCATCTCAATGAAGAACACGTCCAAACCGCCGATACTGGA
AATGGTTTATACGTCTGTCAATGGCAAAATTGTCCGCGCAATGGTCTACC
GTTCAAAGCCAAGTACAAATTAGTCAATCATCTACGTGTGCATACCGGAG
AGAAACCGTTTCCATGCCCGTTTCCCGGTTGTGGGAAATTATTCGCCCGA
TCGGAGAACTTGAAGATTCACAAGAGGACGCATACGGACCATGGCACTGG
AAATGCATCCCTTCTGACGGCATCTTAACGCACCCATGGAACACCCATCC
ACCCATCCGCCCGTCTGATCGCCTCAAGTTCATCAATGGAAGAAAGGGTG
CAAAAAGAATGAAACAAAGACTTTTGGGTAACTTTAATTcttattaaatg
aaaaatgtaaatatgTAATATAGCGCAATGGATGATGAATCGTTATTTAG
TATctttatttcttatttaaagtatttttgctTTGCTATTCTTTATTTTG
ATCGCCTTATGCTTGCCTTACTCTATTTCAAGTGAGTTATTTTAGGGGAC
TAGCCTACGCTTATGAGCCAAAtacttttttagagtttttcttttaaaaa
cgcGGGGTTCGTTTCACCGTACTTATCTTTAGCGACAATTTCGGCAAAAA
TTACCACAGAGCCGTAGGTTGGCCTATTAAATGATGCAATAAttcttcac
tttttaaaaaaacaacaacaacatcttAAGTTTCACAATTGGTCTCTTTA
TTCTGCATTTTATTTATcgtcgttttttttttactttattttattCTAAT
ATGAATTCACACTTTGTACACCTTGTAATTTTATTTATGATAGTtgtatt
ttgcatttttaaaaagaaatatctTAAATTCtca Run BLAST on NCBI protein sequence of TCONS_00006300-protein >TCONS_00006300-protein ID=TCONS_00006300-protein|Name=TCONS_00006300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MSDTYDSAYRGLRQNTSTAVGQIATTLYNGLQGATNNNTTYHNTSLHSNC
GASSAAALASNYLSHTDYMSPTSHLTPKQDSTTAHHLSQSLTNSATNLPY
YDSMSANTSNTTGFGVSSGKYSPHSYRSSSSSSYSHYQNQNNNQLTNNHS
LNGGASTTTDLSSNTHPYYSSFIPPPPTTRSSYPTSSFAHSPYSLDSDFC
GRTARYGSNSPGSLHNQYLDQSLLHQVTAPGMFYPYIRPHPGSNYIMTCM
WIEQHGFAKLKPCGRQFTTMQDIVNHLNEEHVQTADTGNGLYVCQWQNCP
RNGLPFKAKYKLVNHLRVHTGEKPFPCPFPGCGKLFARSENLKIHKRTHT
DHGTGNASLLTAS Run BLAST on NCBI transcript from alignment at sc0000066:214603..217203- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006300 ID=TCONS_00006300|Name=TCONS_00006300|organism=Clytia hemisphaerica|type=transcript|length=2601bp|location=Sequence derived from alignment at sc0000066:214603..217203- (Clytia hemisphaerica)
GTATTGTTTCCCCTTAAACAATAGGCTCCTTTCTTCCCACTTACAAAAGT
TTAAAATAGATTGTGAATTTAAAAAAGATGATATGAAGTTCAACTCTGAT
CGCCTTTCGGTCTTTCTTTTCTTTCTTTCCAAATCCTCGGGAGAAGGTGG
ATAAATTACTGACCGCAAAGTTTTTGCAACTGACCCAAGGTTACAGCAGA
GAAAGGGAGATCTCTCATTTTATCATACTCAAGAGATTAAGAAGATTCTC
AGTCCAACAATTGCTTGAGATTTTGTTATACACAAATAAATTTGTTCATT
GTGTTCAATGTATTGCGAGAAGCAAGGTGCTGGCCTGCTGCGTATATAAA
TTGGTAGGGTCGAAAAAGCTGAAGTTATTTCGCTCTCATACTGCTGGCCA
GTGAATATCAACTGAATGCAAAGAGAAAAGAGGAGTTTAAACATTCACTG
TTTTCGAAGGCGTGTGAACACATCAACTTATTGGTGCAGTGGGAAGCTTA
CAGCGTGTGCAGAGTCAACGGTGCTGTTCCTAAGAATTACAACATCAAGC
AGCTTCGCGGAGTAAGCGGCACTGAGATTGAACAGTTTACAACCTCTAAC
TTAATATAAACATTGAGCACCAGACGTCGCACCGCGATGAGTGATACTTA
TGATAGCGCATATCGTGGTTTGAGGCAAAACACTTCGACAGCAGTTGGAC
AGATCGCAACTACTTTATACAATGGATTGCAAGGCGCCACCAACAACAAC
ACAACTTACCACAACACATCGCTACACTCCAATTGTGGTGCTTCTTCGGC
CGCAGCGCTCGCTTCGAATTATCTTTCACACACAGACTACATGTCACCTA
CATCCCACTTAACACCGAAGCAAGACTCAACAACCGCTCATCATTTATCA
CAGAGTCTTACCAACAGCGCCACAAATCTCCCATACTATGACTCCATGAG
TGCCAACACCTCCAACACAACTGGTTTTGGAGTATCCTCGGGCAAATACT
CGCCACACTCTTACCGATCTTCGTCGTCATCTTCTTACTCACATTACCAA
AACCAAAACAACAACCAATTGACCAACAACCATAGTTTGAATGGAGGTGC
GTCTACAACAACCGATCTCTCATCCAACACGCATCCATACTACTCCTCCT
TCATACCACCTCCACCGACCACCAGATCTTCGTATCCAACATCCAGCTTT
GCACATTCACCTTACTCTCTAGATTCTGATTTCTGTGGACGTACAGCTCG
CTATGGTTCCAATTCACCAGGTAGTCTCCATAACCAATACCTTGATCAAT
CACTTCTTCACCAAGTCACCGCACCAGGGATGTTCTATCCATACATTCGA
CCACATCCTGGCAGCAACTATATCATGACGTGTATGTGGATTGAACAGCA
TGGTTTCGCCAAACTCAAACCGTGCGGACGTCAATTCACAACGATGCAAG
ATATCGTCAACCATCTCAATGAAGAACACGTCCAAACCGCCGATACTGGA
AATGGTTTATACGTCTGTCAATGGCAAAATTGTCCGCGCAATGGTCTACC
GTTCAAAGCCAAGTACAAATTAGTCAATCATCTACGTGTGCATACCGGAG
AGAAACCGTTTCCATGCCCGTTTCCCGGTTGTGGGAAATTATTCGCCCGA
TCGGAGAACTTGAAGATTCACAAGAGGACGCATACGGGTGAGCGTCCTTT
TTTATGTGAATTCAGCGGCTGTGGGCGCCGTTTCGCTAATTCTTCCGATC
GTAAGAAACACTCACACGTTCACACTTCTGATAAGCCGTACACTTGTCGA
ATCAGCACATGCAACAAAAGTTATACACACCCTTCTTCACTTCGTAAACA
CACCAAATTGCACGGGGAAGGTTCTGACTCTGAAGCTGGAAGTCCACTTC
CAGGAGAAATGTCCCCTGAACAACAACTCAACGACTTAAAATCTGAACAT
TTAGACCATGGCACTGGAAATGCATCCCTTCTGACGGCATCTTAACGCAC
CCATGGAACACCCATCCACCCATCCGCCCGTCTGATCGCCTCAAGTTCAT
CAATGGAAGAAAGGGTGCAAAAAGAATGAAACAAAGACTTTTGGGTAACT
TTAATTCTTATTAAATGAAAAATGTAAATATGTAATATAGCGCAATGGAT
GATGAATCGTTATTTAGTATCTTTATTTCTTATTTAAAGTATTTTTGCTT
TGCTATTCTTTATTTTGATCGCCTTATGCTTGCCTTACTCTATTTCAAGT
GAGTTATTTTAGGGGACTAGCCTACGCTTATGAGCCAAATACTTTTTTAG
AGTTTTTCTTTTAAAAACGCGGGGTTCGTTTCACCGTACTTATCTTTAGC
GACAATTTCGGCAAAAATTACCACAGAGCCGTAGGTTGGCCTATTAAATG
ATGCAATAATTCTTCACTTTTTAAAAAAACAACAACAACATCTTAAGTTT
CACAATTGGTCTCTTTATTCTGCATTTTATTTATCGTCGTTTTTTTTTTA
CTTTATTTTATTCTAATATGAATTCACACTTTGTACACCTTGTAATTTTA
TTTATGATAGTTGTATTTTGCATTTTTAAAAAGAAATATCTTAAATTCTC
A Coding sequence (CDS) from alignment at sc0000066:214603..217203- >TCONS_00006300 ID=TCONS_00006300|Name=TCONS_00006300|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at sc0000066:214603..217203- (Clytia hemisphaerica)
ACCATGGCACTGGAAATGCATCCCTTCTGACGGCATCTTAAATGAGTGAT
ACTTATGATAGCGCATATCGTGGTTTGAGGCAAAACACTTCGACAGCAGT
TGGACAGATCGCAACTACTTTATACAATGGATTGCAAGGCGCCACCAACA
ACAACACAACTTACCACAACACATCGCTACACTCCAATTGTGGTGCTTCT
TCGGCCGCAGCGCTCGCTTCGAATTATCTTTCACACACAGACTACATGTC
ACCTACATCCCACTTAACACCGAAGCAAGACTCAACAACCGCTCATCATT
TATCACAGAGTCTTACCAACAGCGCCACAAATCTCCCATACTATGACTCC
ATGAGTGCCAACACCTCCAACACAACTGGTTTTGGAGTATCCTCGGGCAA
ATACTCGCCACACTCTTACCGATCTTCGTCGTCATCTTCTTACTCACATT
ACCAAAACCAAAACAACAACCAATTGACCAACAACCATAGTTTGAATGGA
GGTGCGTCTACAACAACCGATCTCTCATCCAACACGCATCCATACTACTC
CTCCTTCATACCACCTCCACCGACCACCAGATCTTCGTATCCAACATCCA
GCTTTGCACATTCACCTTACTCTCTAGATTCTGATTTCTGTGGACGTACA
GCTCGCTATGGTTCCAATTCACCAGGTAGTCTCCATAACCAATACCTTGA
TCAATCACTTCTTCACCAAGTCACCGCACCAGGGATGTTCTATCCATACA
TTCGACCACATCCTGGCAGCAACTATATCATGACGTGTATGTGGATTGAA
CAGCATGGTTTCGCCAAACTCAAACCGTGCGGACGTCAATTCACAACGAT
GCAAGATATCGTCAACCATCTCAATGAAGAACACGTCCAAACCGCCGATA
CTGGAAATGGTTTATACGTCTGTCAATGGCAAAATTGTCCGCGCAATGGT
CTACCGTTCAAAGCCAAGTACAAATTAGTCAATCATCTACGTGTGCATAC
CGGAGAGAAACCGTTTCCATGCCCGTTTCCCGGTTGTGGGAAATTATTCG
CCCGATCGGAGAACTTGAAGATTCACAAGAGGACGCATACGGACCATGGC
ACTGGAAATGCATCCCTTCTGACGGCATCTTAAATGAGTGATACTTATGA
TAGCGCATATCGTGGTTTGAGGCAAAACACTTCGACAGCAGTTGGACAGA
TCGCAACTACTTTATACAATGGATTGCAAGGCGCCACCAACAACAACACA
ACTTACCACAACACATCGCTACACTCCAATTGTGGTGCTTCTTCGGCCGC
AGCGCTCGCTTCGAATTATCTTTCACACACAGACTACATGTCACCTACAT
CCCACTTAACACCGAAGCAAGACTCAACAACCGCTCATCATTTATCACAG
AGTCTTACCAACAGCGCCACAAATCTCCCATACTATGACTCCATGAGTGC
CAACACCTCCAACACAACTGGTTTTGGAGTATCCTCGGGCAAATACTCGC
CACACTCTTACCGATCTTCGTCGTCATCTTCTTACTCACATTACCAAAAC
CAAAACAACAACCAATTGACCAACAACCATAGTTTGAATGGAGGTGCGTC
TACAACAACCGATCTCTCATCCAACACGCATCCATACTACTCCTCCTTCA
TACCACCTCCACCGACCACCAGATCTTCGTATCCAACATCCAGCTTTGCA
CATTCACCTTACTCTCTAGATTCTGATTTCTGTGGACGTACAGCTCGCTA
TGGTTCCAATTCACCAGGTAGTCTCCATAACCAATACCTTGATCAATCAC
TTCTTCACCAAGTCACCGCACCAGGGATGTTCTATCCATACATTCGACCA
CATCCTGGCAGCAACTATATCATGACGTGTATGTGGATTGAACAGCATGG
TTTCGCCAAACTCAAACCGTGCGGACGTCAATTCACAACGATGCAAGATA
TCGTCAACCATCTCAATGAAGAACACGTCCAAACCGCCGATACTGGAAAT
GGTTTATACGTCTGTCAATGGCAAAATTGTCCGCGCAATGGTCTACCGTT
CAAAGCCAAGTACAAATTAGTCAATCATCTACGTGTGCATACCGGAGAGA
AACCGTTTCCATGCCCGTTTCCCGGTTGTGGGAAATTATTCGCCCGATCG
GAGAACTTGAAGATTCACAAGAGGACGCATACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006300-exon-sc0000066-1575043694:215517..217203 | TCONS_00006300-exon-sc0000066-1575043694:215517..217203 | Clytia hemisphaerica | exon |
| TCONS_00006300-exon-sc0000066-1575043694:214603..215249 | TCONS_00006300-exon-sc0000066-1575043694:214603..215249 | Clytia hemisphaerica | exon |
| TCONS_00006300-exon-sc0000066-1510915933:215517..217203 | TCONS_00006300-exon-sc0000066-1510915933:215517..217203 | Clytia hemisphaerica | exon |
| TCONS_00006300-exon-sc0000066-1510915933:214603..215249 | TCONS_00006300-exon-sc0000066-1510915933:214603..215249 | Clytia hemisphaerica | exon |
| TCONS_00006300-exon-sc0000066-1491911889:215517..217203 | TCONS_00006300-exon-sc0000066-1491911889:215517..217203 | Clytia hemisphaerica | exon |
| TCONS_00006300-exon-sc0000066-1491911889:214603..215249 | TCONS_00006300-exon-sc0000066-1491911889:214603..215249 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:214603..217203 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00006300 vs. Swiss-Prot (Human)
Match: ZIC4 (Zinc finger protein ZIC 4 OS=Homo sapiens GN=ZIC4 PE=2 SV=3) HSP 1 Score: 151.369 bits (381), Expect = 7.200e-40 Identity = 70/122 (57.38%), Postives = 86/122 (70.49%), Query Frame = 1
Query: 1321 APGMFYPYIRPHPGSNYIMTCMWIEQHGFAKLKPCGRQFTTMQDIVNHLNEEHVQTADTGNGLYVCQWQNCPRNGLPFKAKYKLVNHLRVHTGEKPFPCPFPGCGKLFARSENLKIHKRTHT 1686
PG F+ Y+R P ++ C W+ G A C + F+TM ++V H+ EHV + N ++C W+ CPR G PFKAKYKLVNH+RVHTGEKPFPCPFPGCGK+FARSENLKIHKRTHT
Sbjct: 112 GPGAFFRYMR-QPIKQELI-CKWLAADGTATPSLCSKTFSTMHELVTHVTVEHVGGPEQAN--HICFWEECPRQGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 229
The following BLAST results are available for this feature:
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