TCONS_00006286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006286
Unique NameTCONS_00006286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006286 ID=TCONS_00006286|Name=TCONS_00006286|organism=Clytia hemisphaerica|type=transcript|length=534bp
CAACTGACTTGAGTTCAGTATTGGCAGATGATTCAGTAGTAGTGGAAACA
GGCAAGGGTAGATCTGATCGACGCTGAACCAAACCACGCTCAGGAATCCA
GTCATATAAAAATCCCTCtctttcaaaatcttcaatCGATTTAATAGCTT
TCGAATTATCCAAATCGACATCTCTATTGAATTTGGCTAAAAATGGGCAA
TATTTGTTTGACAAGAAATGACGGTCCCTTGGTATTTCATGATCCTCCCA
ATTCGATTCCATGACGccacatttaaaacaaaatacaagGTCTCTTTCTC
CTGTATATACAAAACCAGCCTCAACTAAGTCTTTGATGTAAAAAACTGAA
TCAGCTGGCCATGGTTTCTCATTGAAAGAACGTAACCGTTCTTCATATTT
CTCGTAATCAGGAAGTTTCTCCTCCATTGAAATCGAAGTTTTCTCTTGGC
CATCCATTATAATTTTCCTCCCTGAATAACTTTACTGTTCTTTTAAGATT
GTATTCTATTTTGGATGTTATATTGCGGTTTTCT
Run BLAST on NCBI

transcript from alignment at sc0000066:102299..102884-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006286 ID=TCONS_00006286|Name=TCONS_00006286|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0000066:102299..102884- (Clytia hemisphaerica)
CAACTGACTTGAGTTCAGTATTGGCAGATGATTCAGTAGTAGTGGAAACA
GGCAAGGGTAGATCTGATCGACGCTGAACCAAACCACGCTCAGGAATCCA
GTCATATAAAAATCCCTCTCTTTCAAAATCTTCAATCGATTTAATAGCTT
TCGAATTATCCAAATCGACATCTCTATTGAATTTGGCNTGATTTTATAGC
TTTCGAATTATCCAAATCGACATCTCTATTGAATTTGGCTAAAAATGGGC
AATATTTGTTTGACAAGAAATGACGGTCCCTTGGTATTTCATGATCCTCC
CAATTCGATTCCATGACGCCACATTTAAAACAAAATACAAGGTCTCTTTC
TCCTGTATATACAAAACCAGCCTCAACTAAGTCTTTGATGTAAAAAACTG
AATCAGCTGGCCATGGTTTCTCATTGAAAGAACGTAACCGTTCTTCATAT
TTCTCGTAATCAGGAAGTTTCTCCTCCATTGAAATCGAAGTTTTCTCTTG
GCCATCCATTATAATTTTCCTCCCTGAATAACTTTACTGTTCTTTTAAGA
TTGTATTCTATTTTGGATGTTATATTGCGGTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003591XLOC_003591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006286-exon-sc0000066-1575043694:102716..102884TCONS_00006286-exon-sc0000066-1575043694:102716..102884Clytia hemisphaericaexon
TCONS_00006286-exon-sc0000066-1575043694:102299..102663TCONS_00006286-exon-sc0000066-1575043694:102299..102663Clytia hemisphaericaexon
TCONS_00006286-exon-sc0000066-1510915933:102716..102884TCONS_00006286-exon-sc0000066-1510915933:102716..102884Clytia hemisphaericaexon
TCONS_00006286-exon-sc0000066-1510915933:102299..102663TCONS_00006286-exon-sc0000066-1510915933:102299..102663Clytia hemisphaericaexon
TCONS_00006286-exon-sc0000066-1491911889:102716..102884TCONS_00006286-exon-sc0000066-1491911889:102716..102884Clytia hemisphaericaexon
TCONS_00006286-exon-sc0000066-1491911889:102299..102663TCONS_00006286-exon-sc0000066-1491911889:102299..102663Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:102299..102884 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.22225	5.74832	3.21358	1.57199	10.0104	6.74705	6.87692	8.40894	3.21961	6.95053	4.86623	2.54455	2.97662	2.71426	4.58696	3.5921	3.4418	4.11569	1.85667	3.03574	1.68871	0.772212	5.00653	6.03096	7.50097	7.32204	0.898099	0.958475	4.36182	2.83922
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001370BIR_rpt
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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