TCONS_00006283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006283
Unique NameTCONS_00006283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006283 ID=TCONS_00006283|Name=TCONS_00006283|organism=Clytia hemisphaerica|type=transcript|length=679bp
ctatTGTTAAGTACACTCCTTTTCTTTGATAAGGACCTTTCTAATAACGA
GCCTTTTTTATGATAGATAGGGTTTGATACATAAAAAATGTGGAttaaag
ttaagaacacttaGAATTCTGtccaaatttctgatttttataGAATAAAA
GTATAAAACTTAAGACAATGGGTATATTATTTAGTAAAACAACATTTTAG
TCtattaaaaaaagttaacaTATGGCCACCACCAGGGTTCGAACCTCGAC
GTTCGGCATGCGATGGTTTACGGGTCGGTGCTTTAACCACTGCACCACGA
GTCCGTGTGCTTCAGACTCTGTATGATTTAGATTAGTCTTGTTTTTTGTT
ATAATCCAGTACAATAATGAATAAAACATGTTCATTTAGTCAAAATAGAT
ACATTAGAGGGGATGCTGCATGTGTTtcgtttgttattttttttacgttt
tctttagaaaaatggacTCACTATCAGAAGACCCGTATCAACCGACCATC
AATGCGTCAAttgaaagtgacgaatttggaTCGCCGAGCATTGGTCGACA
ACTCTTGCCCCCGCTATCATCGTCATTTAACTTGGGGTCAAATGAAGAAA
TGCCGAGCATACAAATGTTGATTGCAGATATCCTGTCAAAGGATAGTTCA
GACACACCAAACTTGTCCCAAACCATCCA
Run BLAST on NCBI

transcript from alignment at sc0000066:762987..763665+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006283 ID=TCONS_00006283|Name=TCONS_00006283|organism=Clytia hemisphaerica|type=transcript|length=679bp|location=Sequence derived from alignment at sc0000066:762987..763665+ (Clytia hemisphaerica)
ctatTGTTAAGTACACTCCTTTTCTTTGATAAGGACCTTTCTAATAACGA
GCCTTTTTTATGATAGATAGGGTTTGATACATAAAAAATGTGGAttaaag
ttaagaacacttaGAATTCTGtccaaatttctgatttttataGAATAAAA
GTATAAAACTTAAGACAATGGGTATATTATTTAGTAAAACAACATTTTAG
TCtattaaaaaaagttaacaTATGGCCACCACCAGGGTTCGAACCTCGAC
GTTCGGCATGCGATGGTTTACGGGTCGGTGCTTTAACCACTGCACCACGA
GTCCGTGTGCTTCAGACTCTGTATGATTTAGATTAGTCTTGTTTTTTGTT
ATAATCCAGTACAATAATGAATAAAACATGTTCATTTAGTCAAAATAGAT
ACATTAGAGGGGATGCTGCATGTGTTtcgtttgttattttttttacgttt
tctttagaaaaatggacTCACTATCAGAAGACCCGTATCAACCGACCATC
AATGCGTCAAttgaaagtgacgaatttggaTCGCCGAGCATTGGTCGACA
ACTCTTGCCCCCGCTATCATCGTCATTTAACTTGGGGTCAAATGAAGAAA
TGCCGAGCATACAAATGTTGATTGCAGATATCCTGTCAAAGGATAGTTCA
GACACACCAAACTTGTCCCAAACCATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003588XLOC_003588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006283-exon-sc0000066-1491911889:762987..763665TCONS_00006283-exon-sc0000066-1491911889:762987..763665Clytia hemisphaericaexon
TCONS_00006283-exon-sc0000066-1510915933:762987..763665TCONS_00006283-exon-sc0000066-1510915933:762987..763665Clytia hemisphaericaexon
TCONS_00006283-exon-sc0000066-1575043694:762987..763665TCONS_00006283-exon-sc0000066-1575043694:762987..763665Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:762987..763665 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0754846	0.107842	0	0.0836166	0.151523	0	0	0.146996	0.0800695	0.315405	0	0	0	0	0.320054	0	0.226664	0.0580808	0	0.108506	0.0729828	0	0	0	0	0	0	0	0.167767	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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