TCONS_00006270 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006270
Unique Name	TCONS_00006270
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	992

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000066:399536..404983+

transcript sequence

>TCONS_00006270 ID=TCONS_00006270|Name=TCONS_00006270|organism=Clytia hemisphaerica|type=transcript|length=992bp
ATTGGATCATATTACTTCAGTAGTTAATTTTAGCATAATGTAAAATCTTG
TTATCACAAGTTAcaattaaaaacaacaaaaaccaataaacagtgcgtca
caaacgaAGTCGAAGACAAGGACAGAAGGAAGAAAATGTATTACACTCAA
ACCTTTCCCATCATTTTGCTACTCTGTAATGTAgagATAACTCAGTCAAA
AGTCTCCTCTCACCATaAATTAATAAATGGTTATGAAGTTGTTTACCCAA
GAACAAAATACTTTGATAATAACCAAAAGGTTATTACCCAAAACCAACAT
CAAGATACAAAACATAAGGCAAATGTAAATTTTCAAGGACTTGGAAGGAA
ATTCAGgataaatttaaagaaaaattcaaatatcgTTTCTTCATCAAATA
CTCATCTTCATTTACTAAACGAAACTGGTAACGTTGTTGGGAAACATAGG
GTTGAAAATTGTTATTATAATGGCCAGTTGATGGGTGATGATCAAAGTTT
TGTCTCGCTAAGCCTTTGTAATGGAGTgcgAGGATTGATCAATACAGGTG
ATAGCAAGAGATACTATATCCAACCAATTCATAAAAGAGATCCATTACTT
TTCAAACGTTCGAAACGCAGTGAAGAAACGGGCGAAAAGACCATCGAAAC
ATTGCTGACGTTAGATCGAAGTATGGCACAATTTTACGGTGTTGATGCAG
CCAAGGAATATGCACTAACTGTTGCCAATGTGGCACACAACATATTAAGA
GATTCATCAATTGGACCTAATCCAATCAATTTGGTCATTTCCAAGATGGT
TGTCATGACTACACCGTTGCCTGACTTAACCATCAACCACCATGCAGAAA
ACACGTTGCAATCATTCGGTCGCTGGGCAGAAAGAAGGAATGAGATCAAT
CAAGCAAACGATGACAAACCTGCTTACGATTTCGCTGTTCTCTTGACCAA
GCAAGATATTTGCAAAGACCAAAACCAACCTTGCGAAAGTAC

Run BLAST on NCBI

transcript from alignment at sc0000066:399536..404983+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006270 ID=TCONS_00006270|Name=TCONS_00006270|organism=Clytia hemisphaerica|type=transcript|length=5448bp|location=Sequence derived from alignment at sc0000066:399536..404983+ (Clytia hemisphaerica)
ATTGGATCATATTACTTCAGTAGTTAATTTTAGCATAATGTAAAATCTTG
TTATCACAAGTTAcaattaaaaacaacaaaaaccaataaacagtgcgtca
caaacgaAGTCGAAGACAAGGACAGAAGGAAGAAAATGTATTACACTCAA
ACCTTTCCCATCATTTTGCTACTCTGTAATGTAgaggtaagatttttttt
ttaaataccccATTCTTTCTGGTTCTTCAGTCTTTGTCTCAAGATGCAAG
CAAAATATGGAGGGGTGCCAGTTTGCAGCAGAAAAGTGTGTCACATTTGC
TCGAGATCTTGAGTGCACAACTCCGAAAAAGTCGAGTGCAGctgcaaaat
ttgaggttttcaggtgcaagtTTATAACCCCAAGTGCAGAGTTCCGCTAT
TTTCTCCTCAAGTGcagctaattttagcaattttttgcctttttgggcca
atttctGAGGTATAGGTGCACCTTGTCCGCCAAATTTCACAGGTGTGAAC
TTCCAGTGCAGAACttggtatttccaaatttttccttGAGTTCAGCGttg
ccatactctgcaaacttGGAGGGGTGTTTTATAAAAGGTTGTCGGGTAGA
ATGTAAATGACTACCattgcaaatttattttcaatcttgGGAACGGGTAT
ATTTCGTATAGTTTTTCTATTTGGAGGGGAGTTCTGTTATTATCAGTTAA
GATCAGGGTTGGACTCAACAGTCATGAGGCCCTTTTACGGGCACTCAATC
GTACCCTGTGTCAAAACATAGGGCTGCGTAGCAGTAGGGTGTGGAGTTAT
TATATATagggtctgtaaattacacactaTAAGTATTAGTTTGCTTTGCA
TCCTGCCATGTCTTGTTGCGCAACTGGTAAGACGTTGGGTTTGGAATCCA
TGGTTGCTTGCATTTAGTGTTTGAGCTGAGGCTTGGGAGCTTATTTCAGA
ATCAGTTTAGAAAAGCTAGAAAATAACTTGGAACAGTTCCAAAGACTTAG
AGTAACATCAGAAAGTAGAATGGAAGATAGGAAATAGAGAAAATAGAACA
AATAGATAGTGGAAAAGTCATTTACAGTCTACACAGCACCAGAAACAGCA
TTTTTTGGCTATATGCTATATATGCTACAGGCAGCTTGAGTCTACTCAAA
ATAGTGAATCCTTTTTAGCTCAAATTTAATTCATGTCAGTTTAGTTAAGT
TTAGTTCTATTTCTCAGAAAATTTACCTTTTGGAacaaaaaacttacaaa
aatagaagaatagaaaattttcctcgTCTTAGTTGTATTGTGTCAGTTTT
GAGAGAAGTTTTGTTGtaactttcaaaattcaaggtAGAAATGTTTTAGT
TTCATTTCCAACTTTTTTTGTTCTTAAGCCATATTTTCTCCCTAGATTCT
GaaatttaaagataaaatctCCTCATGTAccaaaatttcgaaacaaaTTT
TAGAATTCTGaaataaaatttgcaagattacCTAAAACATGAAGTAAAAA
CAGTCAATTTTTGCAATACCGAAATATAGTAGGCCCCAGATTTGGTACAA
CAAGACAAAAGGTTTTAAAAACGATGAAGTACACTTGGCAACTTTGTTAC
CTTAAAATCATGAATCTGTCGTCAGTTGGTCAGAAAATTTAGAAACACCA
ATATTGAGTCTGTacgaatattttttttccaaataatgAGCCAAGTAGAA
ATGATTAATCCTTTAACCTAGCATACTTTGtaagtaaaatttgcaaaaaa
aaattgtcctaaGTAGAATATAAATATAATCACAGAATGAAATTTACAGA
ATTTGCAGCTATTTTGGTATTCAAGGAGGCCTGTCTGTAGATATTGTGGC
CCTATTCTGACTAACTTTAACCTTTTTGAATCCTTTTTATACCACCATTA
AAAATTATCACCTGCTTAAGTGAGTTTTTTTACTCCTAAAAACGAAAATA
TGCGACTGAGCCTCTAGTCAGAATGTGATTGTTATTGGGGCTTGTTTAAA
AAATCAATACACAAACTTGGTATATTTCTTATCGAATCACAACATTTAAT
CCTATTTattaaaacagttttttaatCACAGATCAAATGATCAAATAACC
TCTGCATTTTGAGTTCTAGGGTGACTTTGGttttaagtctgaaaatcatt
gttataaaaactttgtttttcttatttcaGATAACTCAGTCAAAAGTCTC
CTCTCACCATagtaagtttcttttttttcaaattttcaagctCATGTATT
TTAAGAATAGTATAATGTAATATGCCACAAAAACTCTACTTTATATATTA
TTTATATTTCAGAATTAATAAATGGTTATGAAGTTGTTTACCCAAGAACA
AAATACTTTGATAATAACCAAAAGGTTATTACCCAAAACCAACATCAAGA
TACAAAACATAAGGCAAATGTAAATTTTCAAGGACTTGGAAGGAAATTCA
GgataaatttaaagaaaaattcaaatatcgTTTCTTCATCAAATACTCAT
CTTCATTTACTAAACGAAACTGGTAACGTTGTTGGGAAACATAGGGTTGA
AAATTGTTATTATAATGGCCAGTTGATGGGTGATGATCAAAGTTTTGTCT
CGCTAAGCCTTTGTAATGGAGTggtatgtttgatttttatacCTTTGTAT
TCTTCTTAATGATTTGTGGTGTCTCCATTACTAGAGTCGAAATTCCACAA
TTTATCTTTTCCATTTAAGTCCAAGAAATCTTTCTAGGAATCTCAAATTT
AGCATAATGATGTAAAACTTCGTATATGATCATCTTTTTAAGGTAGTTTC
TTTCTTAAATTGACTTGATTAGAGAAATATCTTTTAACTTGgcaatgttt
tatttttacagccattttcactgattttcttcattttcagcgAGGATTGA
TCAATACAGGTGATAGCAAGAGATACTATATCCAACCAATTCATAAAAGA
GGTGCTGTCAATATTGAAACTCAACCACACATCTTACGCCAAATATCGCC
AGAGCTCagcatcaaaaatttctctctcgaTCACAAAACAGATCTAATca
attttgatgatgataaaaagaaaggttagCGTTTGTTAAAGATTTCAAAT
GATGCATCTAGCAAATCGTTGGTTATTTCAAAACATAGTGGATTACAAAG
AGGTTAAAACAAATCGAAGTGGAATAAAACGTCTTttcaaacaatcttaa
aagtcGCAGGAACCCAAGAATGCTTTTTATTTCATACCCAATACTTTTTA
CTATCTTTAGATCCATTACTTTTCAAACGTTCGAAACGCAGTGAAGAAAC
GGGCGAAAAGACCATCGAAACATTGCTGACGTTAGATCGAAGTATGGCAC
AATTTTACGGTGTTGATGCAGCCAAGGAATATGCACTAACTGTTGCCAAT
GTGGTAAGTCGTCACACAATTTATTTATGGCTTGTTGAGTTTTTTTTAAG
AGGGAAGTTTAAAATTGCTAAAGACGTTAAAGCTTGCCAAGCTACTCAGG
TAGAATCACCGGTTAGCTCATAGATAGCCTAGCTGACTTGTTATAAAGAG
TATTAATTTTGTTCCACTTTTTTGAACCGTTAAGAttatttaaagtttaa
aaacttCAATTTAACTAAATCATCCATCTATATCGTTTAACATTAAAATG
CTTGAAGGAAGTTTCAATACTAAAAACAATGAACTAATTTTCTCGTCTCA
TTTCCTTACCAGGCACACAACATATTAAGAGATTCATCAATTGGACCTAA
TCCAATCAATTTGGTCATTTCCAAGATGGTTGTCATGACTACACCGTTGG
TAAGGAAGACACTACACGCTGGTTTTATTACATTCCAATAGACTTTGAAA
TAGTATCTAAAATACTTTTATTCAAATGATAGACAGGGCAGTATTTCTTT
TTGAAGGAATAAGCATAACTATGCAAAACTAAATATaccttttaatgaaa
ttaaatgACTGTGACTTGCTTTGCGATGTTTGttccttaaaggttttgtt
ttcaaataagagtgataccatttgcttactcatcaattttaattcataag
CTTTTTCGCATTGGATTGACAAGGGCGTGGAGCAGgcttggtcagaaaga
ggaaaaataaaacattttttgcttatatcagcataatataacaataggca
gacactgttctgatatgaaacgggaacacttatgtaaaaacaaaaNATTC
AAATGATAGACAGGGCAGTATTTCTTTTTGAAGGAATAAGCATAACTATG
CAAAACTAAATATaccttttaatgaaattaaatgACTGTGACTTGCTTTG
CGATGTTTGttccttaaaggttttgtttccaaataagagtgataccattt
gcttactcatcaattttaattcataagCTTTTTCGCATTGGATTGACAAG
GGCGTGGAGCAGgcttggtcagaaagaggaaaaataaaacattttttgct
tatatcagcataatataacaataggcagacactgttctgatatgaaacgg
gaacacttatgtaaaaacaaaacctttaatggtCGATTTTAGATGCCACT
TTATCTATTTGTAACTAATGCTTTGTTAAAGATCTCCTGCTCCGCCTGAC
ACGAAATACTTTGTCGATTTTTCTTCAGCCTGACTTAACCATCAACCACC
ATGCAGAAAACACGTTGCAATCATTCGGTCGCTGGGCAGAAAGAAGGAAT
GAGATCAATCAAGCAAACGATGACAAACCTGCTTACGATTTCGCTGTTCT
CTTGACCAAGTATGTTGTTTTTGATCAATTAAAACCATGAAATATTTATA
TATTGTATAATTCATGAGAAAATCAATTCTTTGTGAGAAGTGACACAAAT
TTTCCACGAAAAGTTTTCCCCAACTAAAATTGCATCCCAAAAAACTAAAG
ATTTACCCCTACTTTGAGTGCGAGTAGAAGCACTTGGTCTCAGCGTTTca
tttctttcgaaaaaaaaagtttacaaaacaCTTCATAAATCTCATTACAG
AAACACAAAATTACCCTTGTTCCTTTTCaagcacaatattttgattCAAC
TAATAATCTTTTGGGTAATTTATGGAGTTGAATTGGAGGTCCTTTAGATT
AACCCATGTCCTCTCGTccgtttgttcgtccgttcgttagtccgtttgtt
cgtctgttaccagcttttcttggAAGAATCTTTTTTGCcgtaaaaatcag
atttttgtattttgggaaatttccttctgtcatttttagggaaaatgagc
attctTTGCGATTGGCTCCaatattttttcagtttttttaattttgcatt
ttcttacTATTGTTGCCATTTTCTCCATTTTCGTATTACACTagccttca
ggtaggtccatttagAAGGTagtttgtttttcttatttccATTTTTCTCT
TCACAGGCAAGATATTTGCAAAGACCAAAACCAACCTTGCGAAAGTAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003581	XLOC_003581	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000066	supercontig	sc0000066:399536..404983 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.509737	0	0	0.305515	0.337991	0	0	0.229091	0	0	0.0463702	0	0.604049	0	0	0	0	0.223206	0.334373	0.154932	0.057869	9.56903e-07	0	0.62767	0.978462	0	0.0663058	0	0

Blast

[Close]

BLAST of TCONS_00006270 vs. Swiss-Prot (Human)
Match: ATS17 (A disintegrin and metalloproteinase with thrombospondin motifs 17 OS=Homo sapiens GN=ADAMTS17 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 8.634e-25
Identity = 74/281 (26.33%), Postives = 130/281 (46.26%), Query Frame = 1

Query:  325 VNFQGLGRKFRINLKKNSNIVSSSNTHLHLLNETGNVVGKHR-VENCYYNGQLMGDDQSFVSLSLCN---GVRGLINTGDSKRYYIQPIHK-------RDPLLFKR----------SKRSEE-----------------------------TGEKTIETLLTLDRSMAQFYGVDAAKEYALTVANVAHNILRDSSIGPNPINLVISKMVVMTTPLPDLTINHHAENTLQSFGRWAERR---------NEINQANDDKPAYDFAVLLTKQDICKDQNQPCES 990
            ++    GR   + L+++   +S        + E G    + R  E C+Y+G+++G   S VSLS C    G+ GLI  G  ++  IQP++        R+ L+ ++          ++R E+                             T E T+ETL+  D  M Q++G +AA+ + LTV N+ +N+ +  S+G   IN+ ++K+V++      L+I HH E +L+SF  W             N++    DD P  D AV +T+ D C  +++PC++
Sbjct:   83 LHLPAFGRDLYLQLRRDLRFLSRGFE----VEEAGAARRRGRPAELCFYSGRVLGHPGSLVSLSACGAAGGLVGLIQLG-QEQVLIQPLNNSQGPFSGREHLIRRKWSLTPSPSAEAQRPEQLCKVLTEKKKPTWGRPSRDWRERRNAIRLTSEHTVETLVVADADMVQYHGAEAAQRFILTVMNMVYNMFQHQSLGIK-INIQVTKLVLLRQRPAKLSIGHHGERSLESFCHWQNEEYGGARYLGNNQVPGGKDDPPLVDAAVFVTRTDFCVHKDEPCDT 357

The following BLAST results are available for this feature:

BLAST of TCONS_00006270 vs. Swiss-Prot (Human)

BLAST of TCONS_00006270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ATS17	8.634e-25	26.33	A disintegrin and metalloproteinase with thrombosp...	[more]

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TCONS_00006270 (transcript) - C. hemisphaerica