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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006269 ID=TCONS_00006269|Name=TCONS_00006269|organism=Clytia hemisphaerica|type=transcript|length=2947bp
ATTTTTTGGAGGTCATGAAATTCGACTTGTttacaatttgattttttcgt
tGTTTTGTCAAGTTGCTTTCAAAATAAGATGTCACAACTAGATTTTCTGT
CGCTTGAGTTCGTGAtaaaaagttttcttcaaagaaATAAAGAAAGTTTG
GAGTTTACCATCTCAAAGAGTCCGTTCGACCATCGACGTTCTAAGAGTAG
TTGCAATATCACAACTGTCAACACAGCTGAAAGCACTCCACAGAAAGATG
AGAAGCGTCAATCACGTCGCATGAGCGATACCATCTTGTCCGATAAACCA
GCTCCCCATCACACTCATTCACCTTCCAAACGATTTATTCGTAAAATCTT
TTCGCCGATGGTTTGCGGtgtgccgtcacccgaccgccGCNATTCACCTT
CCAAACGATTTATTCGTAAAATCTTTTCACCGATGGTTTGCGGcgtgccg
tcacccgaccgccGTCACCTTTTCACCAACAATGGTTCGCTACTCAGTCT
CGGTTCGTACGATTCGGCTTCCGTAATCTCCGACCACGAACAAGACGCGT
ATCCGCAACTCTTCGATTTCGGATCACACGAACTCATGGAAGAAATGACG
TTGATTGATAAAGAACTTCTTGTCAGGATTCCGTGGGGTGAACTCTCAAT
ACTGGGATGgatgtccactgataagTACATCATTGCACCGAACATTATGA
AGATGGTGGAATTCTTCAATCGAGTTGTGATGATGGTCACCACAAGTATT
CTCTCCGAAGAAAATGTCTACAGAAGAGCGAAAATCATTCAGAAAGCCAT
CAAGTTGGCTTTGAAATTTCGATACCAGAAGAACTTTAATTCTTTGAAAG
CAGTCTTGGGAGGTTTGCAATGCACTCCAATCTTTCGACTGAAACAGACA
TGGAAACAAGTACCCTCTAGATATAGAAGAGTGTTTCGTGAATTGTCCGA
ACTAATGAGCGAAGAAAACAACTTTTACAATTACCGCATGGTGCTACGTG
AATCGATGGAGAAACCACCCTGTATTCCGTTCCTTGGAAACTTCTTGACA
ACGGTTGCACATACACACGCTTTTGTTTCCGTTAATTATAAGTACAAGAA
AGACTCCGCGATTGAGAGCGGAGGAGAGAGTGATAGTAACCGAACTTCGC
CCTCCCCAACGAGTTCACCTCATGAAGGTGAAGATGAAAGCTCGAATAAA
AATTCAGAATTAGATAAACAAATAGACCCTTGTCTGAGGAGCTCCACTTC
AAAGATCCATTCAGCGAGCCACATGAGAACGGATTCGGATGATAGCGGTG
TCGTGTTAAATGTTCATAGGTTAAGTCGATCCTCAGATGATTTGGAAACT
AGCCCAAGGGAGGAGAGCCTTAGCTCACCTGATGATGATGGGAGAGTACG
TTTTCATGAAGAAGTTTTCGATAAAAAGAATTCCCAACAAGAAGATGAAG
AATGTTTTTGCCCGTCTAatcaagaaactgaaaaagCGAAAAAACCACGA
TTCTCAGATACTGATTTACCATCAACCACAACCACGTCCTCGACCCCAAA
TCCGACGCGAACGCAACTTTCAGTGTGTCCCCGACACCGACGCAGCGTCA
GTGAAATTATCATGTCACCGACCAGACATCACAGTCGTAGCATAAGCGAT
GCTGGCATACGTAACGCAAATGATATAAACAATGTTATAAATAATAGACC
GGTTGCCGGCAAAGAAAACAGCGGACTTTATACTTGTGAATTGCAATTCT
GGAAGTACCAAATAAATGCAGTGCAATACAAAATCATACCTAAATCATAC
ATACGTCGCTATTTAATGAACTGTCCCTATAACACGGAAGAGGAAAATTA
TAAACTATCATTAAAACGTGAACCACCTGCGCCAAGGTgaataagtacat
attttttaaaCGAATTTTAACCAATTTTTGGATACCAGCCAGCtatgtaa
aatttttattattatgaATTCTATAGACGTAGTATTCTTAGATTTTTGAG
GCCTTTTAAATTGCTGATCTTTTTTTTCCGCAAGGTATCACATTATTCTT
TTACTGCTTTAGgtttaaaatttcttctttttctttttttaaattttctt
tttgagatttttttgatattattgagaattaatatttttgttttggtttt
attCTTATctctttgtttttgatatttttattatttgttttCTTTGTAGT
TTAACCTCAGCTTTATTTCACTCAACTTCATTTAGATCCTTCACTTGTCA
TCGTAGGTCCGATCGGATCAATTCTCTTGACAATTTATGCACTCCATCTG
TTTccaggcacgacgcaacgggtatGGCAggtaccagattttcacaaaaa
aaccctgaaatttccctcttcgtcggtaaaatcgctaaaaattgCTTAAA
TTTTCTCATTCGTAGATATAAAAAGAATCCGTCGTTCCTGGTTTCTGTAC
ACCCCAAGTGGATTAGTTTTTATTTGGTGTTTGTTTTACTTCGTAAGTGA
AAAGTATTTTTTGCGGGAAAAAATatggtaccttatcggggaaaacttcg
ttggggaaaagtgacgacattttggccaagtgatgaatatttttccccga
cgaaatNCGGGGAAAACTTCGTttgggaaaagtgacgaaattttggccaa
gtgacgaatatttttccccgatgaaaattttcgacgaagttttccccgat
aaggtacatcTTATTACCGTCAAAATAGATTCTTTCTGTTTCATATCCTA
TTTGTCGttctagaaatttttatttaagaTTCAACAGTACATattattat
ttaaaatttttgctgttaTTTTTTTCCTTTGCCTTAACTGATGGCAACTT
TGGTGTAAATTAGAAGCATAACAAACTGTATTTTTGTATATAATTTAGGC
GAAAACTAAGAAAAATAtctataaattttcaaaactagaaaatgaaa Run BLAST on NCBI transcript from alignment at sc0000066:392844..398158+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006269 ID=TCONS_00006269|Name=TCONS_00006269|organism=Clytia hemisphaerica|type=transcript|length=5315bp|location=Sequence derived from alignment at sc0000066:392844..398158+ (Clytia hemisphaerica)
ATTTTTTGGAGGTCATGAAATTCGACTTGTttacaatttgattttttcgt
tGTTTTGTCAAGTTGCTTTCAAAATAAGATGTCACAACTAGATTTTCTGT
CGCTTGAGTTCGTGAtaaaaagttttcttcaaagaagtaagAATAGACTT
CGATTATTTTGGAAAGCCATTTATGTCCACCTTACTTCGTTAAGGCATAA
TAGGCAGTTAATGCAGTAGTTTGTTATTATTTATTTGCCAACTACAAAGT
AAAATATAGTGGTAGTTCAAGTGTAtaagcattttttataagaagcagCA
GATTTTTCTCTAATgatcttattttccattttctatGCTTCTACGGCTAc
acggtttttttttttataaggaaccttagctttgctctgagcctggagtt
ccttatttttacagaaaatttcagcctcaaagttccttatgagttcctta
tttacatagctgctaagttttgataaccatctcttactgttccttaaagc
ttgatttcttattctcagcctgagcagttccttaacaatttcttattttt
tggaccattttcagcctcgagttccttataaacgtgttccttatataaaa
aaaaacgtgtatatgagTAGGTTTCAGGAAAATATTAGCTTTGCAAACTT
CTGAATATTAATCCTCATTTTTTTCTATCAACCTTCAGATAAAGAAAGTT
TGGAGTTTACCATCTCAAAGAGTCCGTTCGACCATCGACGTTCTAAGAGT
AGTTGCAATATCACAACTGTCAACACAGCTGAAAGCACTCCACAGAAAGA
TGAGAAGCGTCAATCACGTCGCATGAGCGATACCATCTTGTCCGATAAAC
CAGCTCCCCATCACAGTAAGTGTCCGACAAAATAATAATCAATTTGAATA
CTTCTGTTAGTGCCAAAACGACAAAACGGTTCTTTCCTCTAGAGTCATTT
TTCGTTCTAGGTTTCTCTTtgtaattcaaattttgactgCTTGTTCatga
tttttcattcaaaaaatattaagaacagtgGGAGGCTTTCGATTTTGAAG
TAGATTTTTAATTGGTCTAGTTATTCTACACTGATAATTGCTTTTGATTA
TCCGATTACTGGGACCAGTCAACCAGcaaataaattttgtaattGATTCT
TCACGTGGTCCTTTTCATTTTACCTCAACTAaatttttacacgttttttt
atacaagaacaaactatataagaacataaggcttcgatggccaaaatatt
aagaacaaattaagaacattttaaggctttacagacacaaaatggccata
tttcttaagaaaatggacaaaaatgctcacaaaatcttcaaaataagaac
acgtgAAGAAcagttttaggcttaaaactcaaaaagttaagaacatccca
agacttctaaacttttggatgttcttataaaaaaacgtgtaatagcATTC
TCTATGGTTACTAAGAAGATGTGTTATCTCAGTAGCGTAGAAATGtcttg
aaatttcatttttcactaTTCATTGATTGCTATATTTCTTTTGTCGAGAC
ATTCATTTGTACAGACGTCATTTTAAATGGTCGCGTAATTAATTTCTCAA
TAATTTGTTTGATTCCTGTGGGTCCTGGTTTCAAACGGTTTGGGGAGTTG
CCAGGTTAAACCTTATATATTGTTATTGAACATGTAAAAAGATAGAACAA
AAATGTTTCGCCCACGTGGAGGAAAGATATAAGGAACAACTCAATTTCAG
ATGAAATAGATTTTGTTGTGTATCTTTTGAATATTGATTGATCAAGATTT
GGACTTTCCTCTGAAAATAACATGTTAGTAACATTGTAACATGAGCATGA
TGTGACTAAGATCTTTCACGGCTCTCTTTATTTCTGACcattaacatttt
cttttttccttacAGCTCATTCACCTTCCAAACGATTTATTCGTAAAATC
TTTTCGCCGATGGTTTGCGGtgtgccgtcacccgaccgccGCNATTCACC
TTCCAAACGATTTATTCGTAAAATCTTTTCACCGATGGTTTGCGGcgtgc
cgtcacccgaccgccGTCACCTTTTCACCAACAATGGTTCGCTACTCAGT
CTCGGTTCGTACGATTCGGCTTCCGTAATCTCCGACCACGAACAAGACGC
GTATCCGCAACTCTTCGATTTCGGATCACACGAACTCATGGAAGAAATGA
CGTTGATTGATAAAGAACTTCTTGTCAGGATTCCGTGGGGTGAACTCTCA
ATACTGGGATGgatgtccactgataaggtactAGAAATAAGGGTTTATCG
AAAATCTATCGGAGAAATGTAATTTATTTAAACTAAGTTTTTTTAACAGA
AGATTTTTTTCTAAGGTTGGAACGTCCAAACAGGGGACTCTTCATCATTA
ACTTATATGACTAGGATCTCTTGGTAAAGCAGCAGACTTTTTTCCACTGC
CCATGGCTTCCTTTTGAGGGTTTTTCgattaagtctaaaaatgttcttat
tggATTTCAGTTTTGGTGCGATCTGCTGAAAAAAGTCCACTGAGCCTTAA
ATATTCTTAGAATGTTAAAATTTAGTCTTTATTCATAAATTTGTCCAAAT
CTTTTCGGTTCAGTACATCATTGCACCGAACATTATGAAGATGGTGGAAT
TCTTCAATCGAGTTGTGATGATGGTCACCACAAGTATTCTCTCCGAAGAA
AATGTCTACAGAAGAGCGAAAATCATTCAGAAAGCCATCAAGGTGAGTGC
TTATGTATGTACCAGTTACAGTCGACTTTCAATAGTTTGAACCTCTTATA
ATATTAGTACCTTTAAAAGAATCTTGGACTTTCCATCTTGTACTTCATTT
CAATTCATCTATACGTTAACCAGCTCTCTTGACTTGTATATTTTCGCTTA
ATTCATGAATTTAACTGCATCTTTTATCGGCTACCATCTTCGATAAAATA
CTGCGATTCTATGAAAAATGTTCTACTAACTGTCTTTCTTCTTCTAGTTG
GCTTTGAAATTTCGATACCAGAAGAACTTTAATTCTTTGAAAGCAGTCTT
GGGAGGTTTGCAATGCACTCCAATCTTTCGACTGAAACAGACATGGAAAC
AAGTACCCTCTAGATATAGAAGGTAAGCCATTTTTTGTGAtaggttttct
tttttgaccCTTGAACTCCTTGGGAGTTTTTGACAATTTGCGCTTTAAGT
TTTTTATTAAACGGTTACTCGGGGCTATATGTACCAAATGGTCGAAATCG
ACTTTTCTGTCTACAAACATCTTTAttatttctttattattttccAGAGT
GTTTCGTGAATTGTCCGAACTAATGAGCGAAGAAAACAACTTTTACAATT
ACCGCATGGTGCTACGTGAATCGATGGAGAAACCACCCTGTATTCCGTTC
CTTGGAAACTTCTTGACAACGGTTGCACATACACACGCTTTTGTTTCCGT
TAATTATAAGTACAAGAAAGACTCCGCGATTGAGAGCGGAGGAGAGAGTG
ATAGTAACCGAACTTCGCCCTCCCCAACGAGTTCACCTCATGAAGGTGAA
GATGAAAGCTCGAATAAAAATTCAGAATTAGATAAACAAATAGACCCTTG
TCTGAGGAGCTCCACTTCAAAGATCCATTCAGCGAGCCACATGAGAACGG
ATTCGGATGATAGCGGTGTCGTGTTAAATGTTCATAGGTTAAGTCGATCC
TCAGATGATTTGGAAACTAGCCCAAGGGAGGAGAGCCTTAGCTCACCTGA
TGATGATGGGAGAGTACGTTTTCATGAAGAAGTTTTCGATAAAAAGAATT
CCCAACAAGAAGATGAAGAATGTTTTTGCCCGTCTAatcaagaaactgaa
aaagCGAAAAAACCACGATTCTCAGATACTGATTTACCATCAACCACAAC
CACGTCCTCGACCCCAAATCCGACGCGAACGCAACTTTCAGTGTGTCCCC
GACACCGACGCAGCGTCAGTGAAATTATCATGTCACCGACCAGACATCAC
AGTCGTAGCATAAGCGATGCTGGCATACGTAACGCAAATGATATAAACAA
TGTTATAAATAATAGACCGGTTGCCGGCAAAGAAAACAGCGGACTTTATA
CTTGTGAATTGCAATTCTGGAAGTACCAAATAAATGCAGTGCAATACAAA
ATCATACCTAAATCATACATACGTCGCTATTTAATGAACTGTCCCTATAA
CACGGAAGAGGAAAATTATAAACTATCATTAAAACGTGAACCACCTGCGC
CAAGGTgaataagtacatattttttaaaCGAATTTTAACCAATTTTTGGA
TACCAGCCAGCtatgtaaaatttttattattatgaATTCTATAGACGTAG
TATTCTTAGATTTTTGAGGCCTTTTAAATTGCTGATCTTTTTTTTCCGCA
AGGTATCACATTATTCTTTTACTGCTTTAGgtttaaaatttcttcttttt
ctttttttaaattttctttttgagatttttttgatattattgagaattaa
tatttttgttttggttttattCTTATctctttgtttttgatatttttatt
atttgttttCTTTGTAGTTTAACCTCAGCTTTATTTCACTCAACTTCATT
TAGATCCTTCACTTGTCATCGTAGGTCCGATCGGATCAATTCTCTTGACA
ATTTATGCACTCCATCTGTTTccaggcacgacgcaacgggtatGGCAggt
accagattttcacaaaaaaaccctgaaatttccctcttcgtcggtaaaat
cgctaaaaattgCTTAAATTTTCTCATTCGTAGATATAAAAAGAATCCGT
CGTTCCTGGTTTCTGTACACCCCAAGTGGATTAGTTTTTATTTGGTGTTT
GTTTTACTTCGTAAGTGAAAAGTATTTTTTGCGGGAAAAAATatggtacc
ttatcggggaaaacttcgttggggaaaagtgacgacattttggccaagtg
atgaatatttttccccgacgaaatNCGGGGAAAACTTCGTttgggaaaag
tgacgaaattttggccaagtgacgaatatttttccccgatgaaaattttc
gacgaagttttccccgataaggtacatcTTATTACCGTCAAAATAGATTC
TTTCTGTTTCATATCCTATTTGTCGttctagaaatttttatttaagaTTC
AACAGTACATattattatttaaaatttttgctgttaTTTTTTTCCTTTGC
CTTAACTGATGGCAACTTTGGTGTAAATTAGAAGCATAACAAACTGTATT
TTTGTATATAATTTAGGCGAAAACTAAGAAAAATAtctataaattttcaa
aactagaaaatgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006269-exon-sc0000066-1491911889:392844..392979 | TCONS_00006269-exon-sc0000066-1491911889:392844..392979 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1510915933:392844..392979 | TCONS_00006269-exon-sc0000066-1510915933:392844..392979 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1575043694:392844..392979 | TCONS_00006269-exon-sc0000066-1575043694:392844..392979 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1491911889:393532..393708 | TCONS_00006269-exon-sc0000066-1491911889:393532..393708 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1510915933:393532..393708 | TCONS_00006269-exon-sc0000066-1510915933:393532..393708 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1575043694:393532..393708 | TCONS_00006269-exon-sc0000066-1575043694:393532..393708 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1491911889:394759..395120 | TCONS_00006269-exon-sc0000066-1491911889:394759..395120 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1510915933:394759..395120 | TCONS_00006269-exon-sc0000066-1510915933:394759..395120 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1575043694:394759..395120 | TCONS_00006269-exon-sc0000066-1575043694:394759..395120 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1491911889:395457..395585 | TCONS_00006269-exon-sc0000066-1491911889:395457..395585 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1510915933:395457..395585 | TCONS_00006269-exon-sc0000066-1510915933:395457..395585 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1575043694:395457..395585 | TCONS_00006269-exon-sc0000066-1575043694:395457..395585 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1491911889:395841..395965 | TCONS_00006269-exon-sc0000066-1491911889:395841..395965 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1510915933:395841..395965 | TCONS_00006269-exon-sc0000066-1510915933:395841..395965 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1575043694:395841..395965 | TCONS_00006269-exon-sc0000066-1575043694:395841..395965 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1491911889:396141..398158 | TCONS_00006269-exon-sc0000066-1491911889:396141..398158 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1510915933:396141..398158 | TCONS_00006269-exon-sc0000066-1510915933:396141..398158 | Clytia hemisphaerica | exon |
| TCONS_00006269-exon-sc0000066-1575043694:396141..398158 | TCONS_00006269-exon-sc0000066-1575043694:396141..398158 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:392844..398158 + |
Blast
BLAST of TCONS_00006269 vs. Swiss-Prot (Human)
Match: RGRF1 (Ras-specific guanine nucleotide-releasing factor 1 OS=Homo sapiens GN=RASGRF1 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 5.411e-20 Identity = 52/160 (32.50%), Postives = 90/160 (56.25%), Query Frame = 1
Query: 580 ELMEEMTLIDKELLVRIPWGELSILGWMSTDKYIIAPNIMKMVEFFNRVVMMVTTSILSEENVYRRXXXXXXXXXXXXXFRYQKNFNSLKAVLGGLQCTPIFRLKQTWKQVPSRYRRVFRELSELMSEENNFYNYRMVLRESMEKPPCIPFLGNFLTTVA 1059
E+ E++TL+D + +IP+ E GWM +K P IMK + FN + ++ + I+ E++ R I+K + +A R N+N++ + + + IFRLK+TW +V + + + +L +L+S E F N R L+ PPC+P+LG +LT +A
Sbjct: 1041 EIAEQLTLLDHLVFKKIPYEEFFGQGWMKLEKNERTPYIMKTTKHFNDISNLIASEIIRNEDINARVSAIEKWVAVADICRCLHNYNAVLEITSSMNRSAIFRLKKTWLKVSKQTKALIDKLQKLVSSEGRFKNLREALKNC--DPPCVPYLGMYLTDLA 1198
The following BLAST results are available for this feature:
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