TCONS_00006265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006265
Unique NameTCONS_00006265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1207

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006265 ID=TCONS_00006265|Name=TCONS_00006265|organism=Clytia hemisphaerica|type=transcript|length=1207bp
tccaaaaagtcACGGTAATCTTTACGATTACTTTATgattataattatta
taattGGTCCATTCCATAGAACACATTATTGTCTGGTATTCGTTTGCATC
CGCAAGAAGGTTATTGGAGAGAACCAGGAGTAAGTCCTTACAAAAACCAA
CAACGAAGAAGGAAACGAAGAAGTCCCGATGAAGAAGagcaaacattcga
aaaacTCGGTCAACATGCTGCTAAACTGAAAGAAGCTCTGGAACAAATCA
AAACACCGACGGGACAGAAAGATAACCCATCTCGATATTGCCGTGATTTA
ATGGAATGTTCACCGAAGTTGAAAGATGGGTTTTATTGGATCGATCCAAA
CCAAGGGAATCCGAGTGACGCAATGTTTGTGTTTTGCAATTTTACTCGTG
GTGGAGAAACTTGTGTTTATCCTGATGATAATGCAGCTTCTgaCCAAGAT
TTTTCATACGATATGCAGAAAAATGATTGGTTCAGTCGATCAAAGCGTGG
TTTCATGATTGGTTATAAATTCGTTCGTAAATCTCAATTGAAGTTCTTAC
GGTTACTCAGCGATTCAGTGCATCAAAAAGTTGAACTGAAAACCCAACGT
AatataaatattgaaaagattTCATTCCGCGCTTTGAGCCACGCCAATTC
AGAAACACACCTTTTGGATCAACAAGTTGtcaaaagcttcaaaagaaaTT
GCAAGAACGACAAATGCGCATCGGAATCAATGCTGTCTACAGATGACGAG
AGAATGGATTTACTCCCAATTACCGATTTCAAACTGAACACTTCTCTCCA
AGACAATTCTCAATTGGATGTCAATTTGAATTCTATAGATACGGACACCA
TTTATTTCACGTTACATGTTGGACCTGtttgttttcaatgaaaattttct
ccgctaaattctaaaaaattgatCATCATTatcttttataatattttttt
ttgttgttaaagGGGTTCGGTTGTAAATAGCAGAATCATTTTTTTGTTCC
GATTTTTTTAAACACGCACACTGCTTGACAAATAACTGCAATCTTGACAA
AAAGTGACAAAAACATAGTTCTGGCAAAAAGAATCACCTCTAATTAACTC
TTTTTCATTGATACAAGCAATTTATCACATTCAAACTTTTAAATCTTTGT
CAGCGTTTTTTTTTAGAgatttatttgaaatatttctatcGCATATTTAT
ATTACAA
Run BLAST on NCBI

protein sequence of TCONS_00006265-protein

>TCONS_00006265-protein ID=TCONS_00006265-protein|Name=TCONS_00006265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MECSPKLKDGFYWIDPNQGNPSDAMFVFCNFTRGGETCVYPDDNAASDQD
FSYDMQKNDWFSRSKRGFMIGYKFVRKSQLKFLRLLSDSVHQKVELKTQR
NINIEKISFRALSHANSETHLLDQQVVKSFKRNCKNDKCASESMLSTDDE
RMDLLPITDFKLNTSLQDNSQLDVNLNSIDTDTIYFTLHVGPVCFQ
Run BLAST on NCBI

transcript from alignment at sc0000066:370455..374638+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006265 ID=TCONS_00006265|Name=TCONS_00006265|organism=Clytia hemisphaerica|type=transcript|length=4184bp|location=Sequence derived from alignment at sc0000066:370455..374638+ (Clytia hemisphaerica)
tccaaaaagtcACGGTAATCTTTACGATTACTTTATgattataattatta
taattGGTCCATTCCATAGAACACATTATTGTCTGGTATTCGTTTGCATC
CGCAAGAAGGTTATTGGAGAGAACCAGGAGTAAGTCCTTACAAAAACCAA
CAACGAAGAAGGAAACGAAGAAGTCCCGATGAAGAAGagcaaacattcga
aaaacTCGGTCAACATGCTGCTAAACTGAAAGAAGCTCTGGAACAAATCA
AAACACCGACGGGACAGAAAGATAACCCATCTCGATATTGCCGTGATTTA
ATGGAATGTTCACCGAAGTTGAAAGATGGGTTTTATTGGATCGATCCAAA
CCAAGGGAATCCGAGTGACGCAATGTTTGTGTTTTGCAATTTTACTCGTG
GTGGAGAAACTTGTGTTTATCCTGATGATAATGCAGCTTCTGTAAGGATA
GTTTTGCCAGTAATCTGTACTTGCTTTTTATTTCAGTTGAGCTCGAATCT
GAGAATACCTTCGTTGCGTTACTTCAGTTTTTTTAGAATCATTCCTTGAG
GTCTCGTTGCTTGTTATTGAACAGTAGCGATAGTGGATCTAAGAAATGCA
TCATATCTAATTACAAATattgtcattttgaattttaggaCCAAGATTTT
TCATACGATATGCAGAAAAATGATTGGTTCAGTCGATCAAAGCGTGGTTT
CATGGTAAGATTCGAGAATGCTTTTAAAAACTCATAAACTACAGTGATGA
GCTACAATCTTTTAATATGaattgcaatttttcccttgaatttcaaatgg
tgGGGCCCGGGTCTGTGAACCAGCCCCGTTGTACTACATTTCTCTATTAT
GAATAACTTAAGCGTTTCATCGAGTGTTACATCTCAAATCTGAAACCTCA
AGAATGACATACCTTCATTTCTTTGTTTCAGATTGGTTATAAATTCGTTC
GTAAATCTCAATTGAAGTTCTTACGGTTACTCAGCGATTCAGTGCATCAA
AAAGTTGAACTGAAAACCCAACGTAatataaatattgaaaagattTCATT
CCGCGCTTTGAGCCACGCCAATTCAGAAACACACCTTTTGGATCAACAAG
TTGtcaaaagcttcaaaagaaaTTGCAAGGTAACAAAGCCTCTTTCTTCT
AAATAAAAACTATCGGGGTAGGGTTGGTACCACCAGAAAATGTCAAACTG
TATTGCATGTACCGGAACCCTTTGACATGTTTTAAAAGAAGGTACTAGGC
AAAAATTTATGTGCATGATATATATGAtggaaaatgttctcaaaaGGTGG
AggttaaaaagttaagaaattcGTATGCAAATGAGGTGATACCTAAGTGT
ACaaaattgaatttattgaaTGATGCCACAAGATTGAggtatcacaggaa
aaaatgttcgattgttggaaattttggttttataattgaaggttggaaat
ttgagcgattacttTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaaacagtttg
gaaaacgttaaaaatccatgtggaaattacatttttgtgaaattgaaact
ctttcgattggaaaactagactttttgggtcggaaatttgtgtttctcca
aacagtttggagaacgttaaaaatccatgtggaaattacatttttgtgaa
attgaaactctttcgattggaaaactagactttttgggctggaaatttgt
gtttctccaaacagtttggagaacgttaaaaatccatgtggaaattatat
ttttctaagattgagactctttcttggaaaactagactttttgggtcggt
aatttgtgtttctccaaacagtttggaaaacgttaaaaatccatgtggaa
attacatttttgtgaaattgaaactctttcgattggaaaactagactttt
tgggttggaaagttttgtttctccaaacagtttggaaaacgttaaaaatc
catgtggaaattatatttttctaagattgagactctttcttggaaaacta
gactttttgggttggaaatttgtgtttctccaaacagtttggaaaacgtt
aaaaatccatgtggaaattatatttttctaagattgagactctttcttgg
aaaactagactttttgggctGGAAAtctgtgtttctccaaacagtttgga
aaacgttaaaaatccatgtggaaattatatttttctaagattgagactct
ttcttggaaaactagactttttgggctGGAAAtctgtgtttctccaaaca
gtttggaaaacgttaaaaatccatgtggaaattacgtttttctaaccatt
ttctgcgcatgctcctttgagaaaaccacaagcgatttttcgctcaaaac
tgttttgatttATAGCTAACCTGGATATTAGACTATAATGTgtgcagtca
agctgtaagtttccgtcaggtgaggcgtcgcttcggagcggcctcggtca
atcgcagtgagttcgcacagtgaagcatATAGGGTACAtggtcatagttt
caaatagcgccctgctgagctgtgtgagtgatctaagatcaaccacgtat
ctgtgcgaacaataacgagagattgaccgggagccagcgagcctaggcta
gcgagtgaccgttcacaaaaacaataaccttgtttaagatctcttttccc
catctctgccatcactttttggattttggcttttttcaaccgcgattttc
gaaaattccaaccttgttaaatttggattttagcttttttccaactgaat
tttaaaaaattccaaccttgttttagttggattttggcttttttcaaccg
cgattttcgaaaattccaaccttgttaaatttggattttggcttttttcc
aactgaattttaaaaaattccaaccttgtttaagttggattttggctttt
ttcaaccgcgattttcgaaaattccaaccatTCAGTTtgaattttggctt
ttttcaacctcgattttggaaagtttcaaccttgtttaagcttaGATTTT
Ccgttggattttatcttttttccaactaagaaaacttgaaatttccaaac
ttggaaatcgaaaattttttcctgtgtatggAGATAGCAACTAACTCTCC
CCCAGTACTAACCCAgcttgcacacaacgttgtttcaacgtttatttaac
gttatatggacgttgtgaacgttaaataaacgttgaaacaacgttttgtg
tcAGCTGGGAAGGACGTATCTGTAACTTGTTTCTGAAATGCAGATGTAAA
CTGTGCGAAAAATACTTCACTTTTTTATATAGAACGACAAATGCGCATCG
GAATCAATGCTGTCTACAGATGACGAGAGAATGGATTTACTCCCAATTAC
CGATTTCAAACTGAACACTTCTCTCCAAGACAATTCTCAATTGGATGTCA
ATTTGAATTCTATAGATACGGACACCATTTATTTCACGTTACATGTTGGA
CCTGtttgttttcaatgaaaattttctccgctaaattctaaaaaattgat
CATCATTatcttttataatatttttttttgttgttaaagGGGTTCGGTTG
TAAATAGCAGAATCATTTTTTTGTTCCGATTTTTTTAAACACGCACACTG
CTTGACAAATAACTGCAATCTTGACAAAAAGTGACAAAAACATAGTTCTG
GCAAAAAGAATCACCTCTAATTAACTCTTTTTCATTGATACAAGCAATTT
ATCACATTCAAACTTTTAAATCTTTGTCAGCGTTTTTTTTTAGAgattta
tttgaaatatttctatcGCATATTTATATTACAA

Coding sequence (CDS) from alignment at sc0000066:370455..374638+

>TCONS_00006265 ID=TCONS_00006265|Name=TCONS_00006265|organism=Clytia hemisphaerica|type=CDS|length=2364bp|location=Sequence derived from alignment at sc0000066:370455..374638+ (Clytia hemisphaerica)
ATGGAATGTTCACCGAAGTTGAAAGATGGGTTTTATTGGATCGATCCAAA
CCAAGGGAATCCGAGTGACGCAATGTTTGTGTTTTGCAATTTTACTCGTG
GTGGAGAAACTTGTGTTTATCCTGATGATAATGCAGCTTCTgaCCAAGAT
TTTTCATACGATATGCAGAAAAATGATTGGTTCAGTCGATCAAAGCGTGG
TTTCATGATTGGTTATAAATTCGTTCGTAAATCTCAATTGAAGTTCTTAC
GGTTACTCAGCGATTCAGTGCATCAAAAAGTTGAACTGAAAACCCAACGT
AatataaatattgaaaagattTCATTCCGCGCTTTGAGCCACGCCAATTC
AGAAACACACCTTTTGGATCAACAAGTTGtcaaaagcttcaaaagaaaTT
GCAAGAACGACAAATGCGCATCGGAATCAATGCTGTCTACAGATGACGAG
AGAATGGATTTACTCCCAATTACCGATTTCAAACTGAACACTTCTCTCCA
AGACAATTCTCAATTGGATGTCAATTTGAATTCTATAGATACGGACACCA
TTTATTTCACGTTACATGTTGGACCTGtttgttttcaatgaATGGAATGT
TCACCGAAGTTGAAAGATGGGTTTTATTGGATCGATCCAAACCAAGGGAA
TCCGAGTGACGCAATGTTTGTGTTTTGCAATTTTACTCGTGGTGGAGAAA
CTTGTGTTTATCCTGATGATAATGCAGCTTCTgaCCAAGATTTTTCATAC
GATATGCAGAAAAATGATTGGTTCAGTCGATCAAAGCGTGGTTTCATGAT
TGGTTATAAATTCGTTCGTAAATCTCAATTGAAGTTCTTACGGTTACTCA
GCGATTCAGTGCATCAAAAAGTTGAACTGAAAACCCAACGTAatataaat
attgaaaagattTCATTCCGCGCTTTGAGCCACGCCAATTCAGAAACACA
CCTTTTGGATCAACAAGTTGtcaaaagcttcaaaagaaaTTGCAAGAACG
ACAAATGCGCATCGGAATCAATGCTGTCTACAGATGACGAGAGAATGGAT
TTACTCCCAATTACCGATTTCAAACTGAACACTTCTCTCCAAGACAATTC
TCAATTGGATGTCAATTTGAATTCTATAGATACGGACACCATTTATTTCA
CGTTACATGTTGGACCTGtttgttttcaatgaATGGAATGTTCACCGAAG
TTGAAAGATGGGTTTTATTGGATCGATCCAAACCAAGGGAATCCGAGTGA
CGCAATGTTTGTGTTTTGCAATTTTACTCGTGGTGGAGAAACTTGTGTTT
ATCCTGATGATAATGCAGCTTCTgaCCAAGATTTTTCATACGATATGCAG
AAAAATGATTGGTTCAGTCGATCAAAGCGTGGTTTCATGATTGGTTATAA
ATTCGTTCGTAAATCTCAATTGAAGTTCTTACGGTTACTCAGCGATTCAG
TGCATCAAAAAGTTGAACTGAAAACCCAACGTAatataaatattgaaaag
attTCATTCCGCGCTTTGAGCCACGCCAATTCAGAAACACACCTTTTGGA
TCAACAAGTTGtcaaaagcttcaaaagaaaTTGCAAGAACGACAAATGCG
CATCGGAATCAATGCTGTCTACAGATGACGAGAGAATGGATTTACTCCCA
ATTACCGATTTCAAACTGAACACTTCTCTCCAAGACAATTCTCAATTGGA
TGTCAATTTGAATTCTATAGATACGGACACCATTTATTTCACGTTACATG
TTGGACCTGtttgttttcaatgaATGGAATGTTCACCGAAGTTGAAAGAT
GGGTTTTATTGGATCGATCCAAACCAAGGGAATCCGAGTGACGCAATGTT
TGTGTTTTGCAATTTTACTCGTGGTGGAGAAACTTGTGTTTATCCTGATG
ATAATGCAGCTTCTgaCCAAGATTTTTCATACGATATGCAGAAAAATGAT
TGGTTCAGTCGATCAAAGCGTGGTTTCATGATTGGTTATAAATTCGTTCG
TAAATCTCAATTGAAGTTCTTACGGTTACTCAGCGATTCAGTGCATCAAA
AAGTTGAACTGAAAACCCAACGTAatataaatattgaaaagattTCATTC
CGCGCTTTGAGCCACGCCAATTCAGAAACACACCTTTTGGATCAACAAGT
TGtcaaaagcttcaaaagaaaTTGCAAGAACGACAAATGCGCATCGGAAT
CAATGCTGTCTACAGATGACGAGAGAATGGATTTACTCCCAATTACCGAT
TTCAAACTGAACACTTCTCTCCAAGACAATTCTCAATTGGATGTCAATTT
GAATTCTATAGATACGGACACCATTTATTTCACGTTACATGTTGGACCTG
tttgttttcaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003579XLOC_003579Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006265-exon-sc0000066-1491911889:370455..370895TCONS_00006265-exon-sc0000066-1491911889:370455..370895Clytia hemisphaericaexon
TCONS_00006265-exon-sc0000066-1510915933:370455..370895TCONS_00006265-exon-sc0000066-1510915933:370455..370895Clytia hemisphaericaexon
TCONS_00006265-exon-sc0000066-1575043694:370455..370895TCONS_00006265-exon-sc0000066-1575043694:370455..370895Clytia hemisphaericaexon
TCONS_00006265-exon-sc0000066-1491911889:371093..371158TCONS_00006265-exon-sc0000066-1491911889:371093..371158Clytia hemisphaericaexon
TCONS_00006265-exon-sc0000066-1510915933:371093..371158TCONS_00006265-exon-sc0000066-1510915933:371093..371158Clytia hemisphaericaexon
TCONS_00006265-exon-sc0000066-1575043694:371093..371158TCONS_00006265-exon-sc0000066-1575043694:371093..371158Clytia hemisphaericaexon
TCONS_00006265-exon-sc0000066-1491911889:371386..371583TCONS_00006265-exon-sc0000066-1491911889:371386..371583Clytia hemisphaericaexon
TCONS_00006265-exon-sc0000066-1510915933:371386..371583TCONS_00006265-exon-sc0000066-1510915933:371386..371583Clytia hemisphaericaexon
TCONS_00006265-exon-sc0000066-1575043694:371386..371583TCONS_00006265-exon-sc0000066-1575043694:371386..371583Clytia hemisphaericaexon
TCONS_00006265-exon-sc0000066-1491911889:374137..374638TCONS_00006265-exon-sc0000066-1491911889:374137..374638Clytia hemisphaericaexon
TCONS_00006265-exon-sc0000066-1510915933:374137..374638TCONS_00006265-exon-sc0000066-1510915933:374137..374638Clytia hemisphaericaexon
TCONS_00006265-exon-sc0000066-1575043694:374137..374638TCONS_00006265-exon-sc0000066-1575043694:374137..374638Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006265-proteinTCONS_00006265-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:370455..374638 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.38177	2.18394	1.40876	0.905707	14.9572	11.3269	20.201	22.3777	11.5032	17.2913	11.489	11.956	52.7699	62.8554	12.3739	10.5496	24.2846	23.8515	68.7008	52.1581	31.2429	32.3896	20.5836	24.3461	35.381	33.5183	5.16692	5.46225	14.2832	13.7082
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000885Fib_collagen_C
IPR014716Fibrinogen_a/b/g_C_1
Vocabulary: Molecular Function
TermDefinition
GO:0005201extracellular matrix structural constituent
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005201 extracellular matrix structural constituent
Blast
[Close]
BLAST of TCONS_00006265 vs. Swiss-Prot (Human)
Match: CO5A1 (Collagen alpha-1(V) chain OS=Homo sapiens GN=COL5A1 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 1.259e-32
Identity = 80/249 (32.13%), Postives = 115/249 (46.18%), Query Frame = 1 
Query:  178 DEEEQTFEKLGQHAAKLKEALEQIKTPTGQKDNPSRYCRDLMECSPKLKDGFYWIDPNQGNPSDAMFVFCNFTRGGETCVYPDDNAASDQDFSYDMQK-NDWFSRSKRGFMIGY-----KFVRKSQLKFLRLLSDSVHQKVELKTQRNINIEKI-------SFRALSHANSETHLLDQQVVKSFKRNCKNDKCASESMLSTDDERMDLLPITDFKLNTSLQDNSQLDVNLNSIDTDTIYFTLHVGPVCF 885
            D  E+ F  L      LK  +EQ+K P G + NP+R C+DL  C P   DG YW+DPNQG   D+  V+CNFT GG TCV+PD  +   +  S+  +    WFS  KRG ++ Y       V   Q+ FLRLLS S HQ V     +++  +         + R L   + E    +   +++    C   K   +++L  D  +++ +PI D   N    + SQ              F   VGP CF
Sbjct: 1606 DGMEEIFGSLNS----LKLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCVFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASAHQNVTYHCYQSVAWQDAATGSYDKALRFLGSNDEEMSYDNNPYIRALVDGCATKKGYQKTVLEIDTPKVEQVPIVDIMFN-DFGEASQ-------------KFGFEVGPACF 1836
The following BLAST results are available for this feature:
BLAST of TCONS_00006265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CO5A11.259e-3232.13Collagen alpha-1(V) chain OS=Homo sapiens GN=COL5A... [more]
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