TCONS_00006265-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006265-protein
Unique NameTCONS_00006265-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length196

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006265-protein ID=TCONS_00006265-protein|Name=TCONS_00006265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MECSPKLKDGFYWIDPNQGNPSDAMFVFCNFTRGGETCVYPDDNAASDQD
FSYDMQKNDWFSRSKRGFMIGYKFVRKSQLKFLRLLSDSVHQKVELKTQR
NINIEKISFRALSHANSETHLLDQQVVKSFKRNCKNDKCASESMLSTDDE
RMDLLPITDFKLNTSLQDNSQLDVNLNSIDTDTIYFTLHVGPVCFQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003579XLOC_003579Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006265TCONS_00006265Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000885Fib_collagen_C
IPR014716Fibrinogen_a/b/g_C_1
Vocabulary: Molecular Function
TermDefinition
GO:0005201extracellular matrix structural constituent
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005201 extracellular matrix structural constituent
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000885Fibrillar collagen, C-terminalSMARTSM00038COLFI_2coord: 2..196
e-value: 2.7E-8
score: -31.8
IPR000885Fibrillar collagen, C-terminalPFAMPF01410COLFIcoord: 3..176
e-value: 2.4E-29
score: 102.2
IPR000885Fibrillar collagen, C-terminalPROSITEPS51461NC1_FIBcoord: 1..182
score: 28.062
IPR014716Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1GENE3D3.90.215.10coord: 2..79
e-value: 0.0029
score: 17.0

Blast
[Close]
BLAST of TCONS_00006265-protein vs. Swiss-Prot (Human)
Match: CO5A1 (Collagen alpha-1(V) chain OS=Homo sapiens GN=COL5A1 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 4.965e-26
Identity = 63/206 (30.58%), Postives = 92/206 (44.66%), Query Frame = 0 
Query:    3 CSPKLKDGFYWIDPNQGNPSDAMFVFCNFTRGGETCVYPDDNAASDQDFSYDMQK-NDWFSRSKRGFMIGY-----KFVRKSQLKFLRLLSDSVHQKVELKTQRNINIEKI-------SFRALSHANSETHLLDQQVVKSFKRNCKNDKCASESMLSTDDERMDLLPITDFKLNTSLQDNSQLDVNLNSIDTDTIYFTLHVGPVCF 195
            C P   DG YW+DPNQG   D+  V+CNFT GG TCV+PD  +   +  S+  +    WFS  KRG ++ Y       V   Q+ FLRLLS S HQ V     +++  +         + R L   + E    +   +++    C   K   +++L  D  +++ +PI D   N    + SQ              F   VGP CF
Sbjct: 1645 CHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCVFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASAHQNVTYHCYQSVAWQDAATGSYDKALRFLGSNDEEMSYDNNPYIRALVDGCATKKGYQKTVLEIDTPKVEQVPIVDIMFN-DFGEASQ-------------KFGFEVGPACF 1836
The following BLAST results are available for this feature:
BLAST of TCONS_00006265-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CO5A14.965e-2630.58Collagen alpha-1(V) chain OS=Homo sapiens GN=COL5A... [more]
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