TCONS_00006246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006246
Unique NameTCONS_00006246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006246 ID=TCONS_00006246|Name=TCONS_00006246|organism=Clytia hemisphaerica|type=transcript|length=2812bp
ggaaaaaataattaaaaaaacaacaaaagaaatgatAGAGCAATTACAGA
GACATGTTTTTTGTTGGTGTTTATTCATGGCGTGTTATCTCCACCACAAC
GCAGTCATCGGAAAAGTTTTCCCATCCATCATTTGGAGCCCCTACAACCC
ACTATTTTCATGTGAAGAACCCACATTGAATGTCCGAGTTGATGACATTG
TTAAATTCATTTGTCCATATTACGATGTTGGGTTTGTGCAACCTGAGGAC
AGCCTGGACAAACCTCTTTACGAAAACATGTACTTGGAAGTGACGAGCAA
ATATTAAAATGCGATCAATTGCCATCCAGCGCAAACTCAAACCGTCTGAG
GTTTATCAAAACTCAAACCTTTCCTGGACAAATGTATTACGAAGAAGGGA
AAAGCTACTATTTCATCGacTAACTCACTAACACAACATTACTGATATAT
TTTCTGAGCTGATGGTAATTCTTTATAGCTGCAAGCATGTATTGGAAGGA
AGCATTGTTTGGTGAGGTACTGGTTATCGGACAGCTGAGAATGTGAACAA
CACCATTGGTGGTAGTTGTAACACAACAGAAAATGAGTTTCAATACAAAC
TACGTTTGAAAGTCTACATTTGTCGTCAAGATGAAGTGTGTAGAACGTGT
AATACTGCACAATGTTATTCGAAAgAATGTCACTGCTCGCCTTGGGTTCG
AAATGGCTTCAATGTTACCgacgatttttcttctttatcccAAACATACC
AGCGAAGATGTAAAGCACCCAATGAAAATGCTCGCTATGAAAGTAAAACC
ATTGACAGTGTCTCGTTAAACAGTTGCACTGAATGGAAAAAGCATTCGAA
TGAAACGTGCAACTTTATGAACACGCCATCAAATATTGATTGCCCTCTAC
TCTTCGTCAAAACTTGCCAATCCAGCATAGCATCTTACTCTTTTTGCAAA
TATGTGcctgatttttcaaactgccattgCTCTGATTGGATTGCTAAAGA
GAGAAAAGTAGCGCCTGACTTCTCAGCTATTCATCAGATTTTCGAACGCA
CGTGCTCGTCATCTTATAATAACTCAACCAGAATCGAAAGTAAAGAAACA
CAAAATGCAACCATCCATTCATGCCAGGATTGGGAGAAACCGGATGATAA
GCTAGAGATGAACTCTTGTCTTTTTATCAACAATAACACACTTGCACTGA
ACAGTGCATGCGCTAGTATTGAGCTTAAAAGATGTTCATCTTCAATGCAA
AACATCAACATATGTCGCTACATTGATAAAAAATGCCCAACTTGTACTCA
ATGGAGTAAAACTTCATACTATAACATTTCTTCTGACTTGAAAGtgaaag
ctgaaaattttctcagtaTTTGTCCAAACGGCACAATCAATGAAAAGTCT
GAAAACATAAATTGTGTCTTGGATTGTTCAAGTTGGCAAAAAGTGGAACC
TGACTCTCATTGTGATCAATATGAGAATCAAAAGCCAGattgttttgaaa
acaaacaGAAACGAAGTTGTTCGTCAGTGAATTGTCAATTCAATCTTTCC
ATTTGTAAATACATAGGCGTGACTTGTCCTCATTGTAACCCATGGAGTGA
AATCGAGAAAACACCTTCTGCAGACTTCACTCAATTATCTTTGAATGAGA
CTCGATGGTGTAGAGATGGAAATGACAACAAGACAGAGTTTAAACAACGA
GATTGTGATTTGCAATGTGAAGATTGGAAAGAGTTTGATGAGGAACAAGA
TGAAGGCTGCATCATATTGAATGGAAATACAACAACAACACCAAAGAAAG
ATAACCAACTTTGTGGAATGACTTCTAAACGTTGCCAAAGCAACCAATGT
AACAAAGAGATCAACTTTTGTGCATTTTCTACATGTACAACCAGCAAACC
AACTACTCGTAGTCAAAGTGGCACTCCAGAAGTTGAAAAACAAGTTGGGC
CAGGTGAAGCGAAGGAGAGTAACAAATTCCTTTACATTTCCATTCCAATG
TTTCTGGTGCTGTTTGCATTGGGTATATTGGTAGGCATATTGGCTTTCAA
GAGGTACCACCAAAAGAAATGTCTGAATTTCATCATGAGGCCAAACCAAG
TCGACGTCGGAgAAGAAAGAGGAAACGTGAATTTAGCATATCAATCGTCA
GTTATCGAGAAGCGACCAAACGCACAATCTGTTTATTATGCCAACGAGTC
GGATAGTGTTCATTGTGACACTTTTGATGAAGAATCGAAAAGCTGATAAA
GTGTTATCGTGAATGTGCAGAATTGATGTGTGCCAGATTGTTTTCGTAAC
TTTTTGAAAGTTGTATAAATTAAGTCTTTAATTGACGACATTAAATTGTC
AGGTCCATCGTGTATTTCATCaatcttttggaaatttttgatcatGGAAA
TAATGATAGTGACTTGACTTTGGCTCTTTCggaatcttttaaaaatatca
accaaaatctgcataaattgAACCTTTGTTCCTTGAGATTTCAAACTAAG
ACCTTTCTAAACCTCTTTTTGTAAAATACTGCTcagattgaattaaaaaa
tatttttataactaACACAATTAACTGTaaatataatttcaaagaaaaat
tgcatGTTTATTTATAATGATTcgtattttttagtttttccagattttag
aattgcaaaatttttatgaagattcaaatgatattgaaaatagagaagat
aatttttttatgaaacctACATTTTATAGAGAAAATTCTCAAACAGGAAA
TTTAATGAATAGTTATATACATAACTGGTACCTAATAATATCATcgatgt
tttaaatatttt
Run BLAST on NCBI

protein sequence of TCONS_00006246-protein

>TCONS_00006246-protein ID=TCONS_00006246-protein|Name=TCONS_00006246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
MNTPSNIDCPLLFVKTCQSSIASYSFCKYVPDFSNCHCSDWIAKERKVAP
DFSAIHQIFERTCSSSYNNSTRIESKETQNATIHSCQDWEKPDDKLEMNS
CLFINNNTLALNSACASIELKRCSSSMQNINICRYIDKKCPTCTQWSKTS
YYNISSDLKVKAENFLSICPNGTINEKSENINCVLDCSSWQKVEPDSHCD
QYENQKPDCFENKQKRSCSSVNCQFNLSICKYIGVTCPHCNPWSEIEKTP
SADFTQLSLNETRWCRDGNDNKTEFKQRDCDLQCEDWKEFDEEQDEGCII
LNGNTTTTPKKDNQLCGMTSKRCQSNQCNKEINFCAFSTCTTSKPTTRSQ
SGTPEVEKQVGPGEAKESNKFLYISIPMFLVLFALGILVGILAFKRYHQK
KCLNFIMRPNQVDVGEERGNVNLAYQSSVIEKRPNAQSVYYANESDSVHC
DTFDEESKS
Run BLAST on NCBI

transcript from alignment at sc0000066:272763..283617+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006246 ID=TCONS_00006246|Name=TCONS_00006246|organism=Clytia hemisphaerica|type=transcript|length=10855bp|location=Sequence derived from alignment at sc0000066:272763..283617+ (Clytia hemisphaerica)
ggaaaaaataattaaaaaaacaacaaaagaaatgatAGAGCAATTACAGA
GACATGTTTTTTGTTGGTGTTTATTCATGGCGTGTTATCTCCACCACAAC
GCAGTCATCGGAAAAGTTTTCCCATCCATCATTTGGAGCCCCTACAACCC
ACTGTAAGTAGCTTAAAACTTTCCGAAGGTTATTCATATGTTAGCAAACT
TGAGTTTTTCtggtaatatgaaaatataatcTTGAAATATCATAAATCAG
ATCACTTTACCTcttaaaaaacttttgttcTGAAGCAAAAACTTATGCCT
CAAACTCAAAATCTTGAAGTGTGCGATTAAACATTGAAGGTTCTCTTTAC
ACTTTAAAGAAAGTCTGAGAGAACGTTCACAATATATCTTGAAACTCATC
tagtgggggggggggacgCAAGTATGCATTATTGAATATGGACTTCAAAA
AGACACGTAATAGGTTGAAATATCGcccaaagagaaaaatttcgttAGAT
ACACCTTTTGACACGTCATTCACATACGAAACATGTGATGGTGTCAATCA
AGCTGCATCTCTATAAGCATAAATGACTCCTTCAGCTCAGGCTTTTTTCC
CAACATTTCCAAGTTCGCGACAGTCACCCCAGTCTacaagaaaaattcta
aaaacgataaAAGTAACTATTGACCAATAAGTATACTGCCGGTAATAtcc
aaaatttacgaaagagTATATCACAATCAAATATCGGAATACTTTGAGCA
CTACTTTGATGAACAACAATGTGGTTTCAGGAAAGGATATTCCACTCAAA
CCTCTCTTCTCCCAATGGAAGAGATCTGGAAGCTAGCCAATgacaaaaaa
gatgtttttgggGCACTGCTCATCGACCTTTCTAAGGCCTTTGACTGCAT
GTGCCACAAATTACTTGtagcaaagatcagtgcatacGGGTTCGATGACC
TTTCCACTGGGTTAGTCAAGAGTTATCTAGAAAATAGGCAACAAAGGACA
AAAGTAGGCAACGAACTGAGTAACTGGATCAAGATCAAGGATGGTGTTCC
CCAGGGAtctgtttttcaatatttatataTGTGAcctctttttcatcatt
gaggATACTAAGGTTGCGAATTATGCGGACGATACGACACCCTATGTTAG
TGCTCCTACCTGGGTTGAAGTAAGTGGTAAACTAAGCTCTGTAGCAGAAA
AAATCTTCACATGGCTTTCGATTAATCAAATGGTTGGTAATGCTGACAAA
TGTCAGCTAATAGTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCTTCTAGATAGATTTGTAATtaatagttgatattg
attagcctcgagctaagtacacattgtactactttgcatcaactttaaag
aaaagaaacataaacaacATAAACATAatcccattgagtttcaagcccga
agggctaagggtgagactcctggatgggaaatgaaacaacttattttcca
tccagaacgtagtttttacacaaacgccggattgaaactaaaatctatcg
ctagatttcaaaaaaatgtagtcctcaaaaacaaaggaatttctaaataa
aacccgtcgtcatgattacggcgtgttctatgcgcgttttggatgggaaa
taagtggcttcaatttctcttgcctgagaagggttaaagtctcgcctcta
gtccttcgggcttgaaacatGTGATggtgttaatttttctttcattcttt
TAGATTTTCATGTGAAGAACCCACATTGAATGTCCGAGTTGATGACATTG
TTAAATTCATTTGTCCATATTACGATGTTGGGTTTGTGCAACCTGAGGAC
AGCCTGGACAAACCTCTTTACGAAAACATGTACTTGGTAAAGGAAGACAG
AAACGCTTTCGATCAATGTGATGCATCAGGTTCAGGTTTGATCCCACTTT
TAAATCTTGTAGTAGTCATTTgatcgaaaatcgaaaatctcaGTAATTCA
TGATACAtaccattacaatgtcttccacggacccaacaccGGATTGGTTG
CAATTTACGTACTGACTGATGTTACGTCACTTGCAAGCAATCAATTGTTG
GGTCTCTGATGATGTAACATCAGATGAAATTGCAATTCAATTGTGCAAAG
caagttttttggactttgtgtgagattgcttcattagttttttctgattt
ttttgcatgtaTAAAGAGGGCAAGGTTGTCGTAACCGATTTTCCTGGAAA
GTTTTTTTAGCAGTAAAAAtcgtattttcttatttggggaaattcccttt
tgtcatttttaaaggaaagtGAGCATTTCTCGCGATAGGCTTGGTTTTTA
TGATGATTTTTTAGTCTGCATTTTCTTACTTTTGttgtcacttttttctc
ttttcttatTTGCATTAgacttcaggtaggtccattcagcatgtagcttt
tCAATTCTCAGAGTGCGtcatttcatctattttgacaGTGCCTCATTTCT
CCAGCTAAACATTAATCACAGAAGCATGGAATCAGGTTGGTCAAACGTTA
CTTGACATAGGTGTATTCATTTTTTAGCGATATAATCTCCTTCATTTTTT
TAGGAAGTGACGAGCAAATATTAAAATGCGATCAATTGCCATCCAGCGCA
AACTCAAACCGTCTGAGGTTTATCAAAACTCAAACCTTTCCTGGACAAAT
GTATTACGAAGAAGGGAAAAGCTACTATTTCATCGGTAAATTATCATACC
AGTCCGATTTCACATGCTTTCCTTTCTTGACTAATCTTACTGTTgttctt
caagtattttttgataaatgtcATTGTCCTTTATCTGGCATAAGGGTATT
AAACCTTTCTCATGTCGGTTATATTAGTGTGGTTGGGTTTGTTTGTTGAC
TCCTCggttatctttttctttttattcatttcataTCTATTGGTGGTCTT
TGAGATCTTGCAAATGAGCTCATTTGcgatattttaagattttgcggGGA
CTTGTTTTCgaataaaagaattttaaaaaaaatctctgaTTATAACTTGT
TACTATAACTTATTAATAACCtcttgatttcatttttagacTAACTCACT
AACACAACATTACTGATATATTTTCTGAGCTGATGGTAATTCTTTATAGC
TGCAAGCATGTATTGGAAGGAAGCATTGTTTGGTGAGGTTAGAAGTGTAT
GATTCGTTAGATTCAATGTAGTGTCCGaattaaattgaaataattAACAA
AACTTTATTTACATCATTTAAATTACATAGTCTTTTAGCACTACACCCAA
TTCCTGAGTTTTCACCAAACCTTTGTGAAGTTAATATCAAGTAACACCTA
ATGAAAAACCATtttgagaattaatttaaacTACATAATGCACCAAAGAT
AATACCTTCAATGGTGGTAGAACCTAATATTAactttaccattttacatt
ggCGATTCAGGTACTGGTTATCGGACAGCTGAGAATGTGAACAACACCAT
TGGTGGTAGTTGTAACACAACAGAAAATGAGTTTCAATACAAACTACGTT
TGAAAGTCTACATTTGTCGTCAAGATGAAGTGTGTAGAACGTGTAATACT
GCACAATGTTATTCGAAAggtattttgttgtttttgctaCTACATGTGTC
ATTACACCATTGTCATGCATGAAAGCTCCAATTTTTTCGTACAACAAATA
ATTCAAATCACGCATATACATTATTTCATGACCAAGTGATTGGTCTCAGT
AAAGAGATGGTTTGAGAAACCCTCTGTGGCCCTGAGTATAACTTCTGTGG
TCCTGAGTAACACCTCCAAGTATTTTTGTCAAACatttttccaaagtcga
gatatcatTAACTGAAATTTCTAAATATAGATGGGTTttacacggttctt
acgttgaaattctattgttttcttactAAAGGTAAAAAACTTggatatct
cgactttggaaaatagttaagGCAAAAATATTTGAGCTTTTGTTCGGGAC
AAGGAATCCACAttccaaatatctcaaaccatttgACTATCTTTAAACAA
TATACATTAATCAACCCCAACACAACAAGGGATTGGTCTTTGTTTGCAAG
ggtcaaatgacgtcataatgttTCATAAGTATCAATGCGAGGACTTCTGA
TATGTGACGTCATTCAACCCTGGTAAACTCGAACCAAACCCTCTTTCATG
CGGGTTTTGTTGCAAGGGTTGATTGGTGTAATACTGTTaacattttgtga
aaaataattgtaCTTTGCATGAAAATCAGTAGTGTAtcaatttgtttata
ttttgatCGTTTTTCCAATTTGGATTTATAAAAGAGGCAACTGCACTTGG
CATTTTAATAAATGCTCATTTCCAAAATAGATATTGATTGGGGCATGAAT
TTTATCAATAATCAATATACCAATATACAATATGCATTCTGCAAGAAATT
ATTCAATAAACtgcaagaaaaacaaaatgataTGACAAAGATTTGACTTG
ACAGCATGATCgtactaaaaattaaaaatcattaaacattaaaaaacaat
tttttgatccAAAATGTTTTTAGAAGCCAAGGTGAGCTCATGCATGACAA
TGAACAACAGAAAGAATCGACCACAACATGAAAATACTTTGgacgaactt
ttttttaattctcacTTCTTTTAGAATGTCACTGCTCGCCTTGGGTTCGA
AATGGCTTCAATGTTACCgacgatttttcttctttatcccAAACATACCA
GCGAAGATGTAAAGCACCCAATGAAAATGCTCGCTATGAAAGTAAAACCA
TTGACAGTGTCTCGTTAAACAGTTGCACTGAATGGAAAAAGCATTCGAAT
GAAACGTGCAACTTTATGAACACGCCATCAAATATTGATTGCCCTCTACT
CTTCGTCAAAACTTGCCAATCCAGCATAGCATCTTACTCTTTTTGCAAAT
ATGTGcctgatttttcaaactgccattgCTCTGATTGGATTGCTAAAGAG
AGAAAAGTAGCGCCTGACTTCTCAGCTATTCATCAGATTTTCGAACGCAC
GTGCTCGTCATCTTATAATAACTCAACCAGAATCGAAAGTAAAGAAACAC
AAAATGCAACCATCCATTCATGCCAGGATTGGGAGAAACCGGATGATAAG
CTAGAGATGAACTCTTGTCTTTTTATCAACAATAACACACTTGCACTGAA
CAGTGCATGCGCTAGTATTGAGCTTAAAAGATGTTCATCTTCAATGCAAA
ACATCAACATATGTCGCTACATTGATAAAAAATGCCCAACTTGTACTCAA
TGGAGTAAAACTTCATACTATAACATTTCTTCTGACTTGAAAGtgaaagc
tgaaaattttctcagtaTTTGTCCAAACGGCACAATCAATGAAAAGTCTG
AAAACATAAATTGTGTCTTGGATTGTTCAAGTTGGCAAAAAGTGGAACCT
GACTCTCATTGTGATCAATATGAGAATCAAAAGCCAGattgttttgaaaa
caaacaGAAACGAAGTTGTTCGTCAGTGAATTGTCAATTCAATCTTTCCA
TTTGTAAATACATAGGCGTGACTTGTCCTCATTGTAACCCATGGAGTGAA
ATCGAGAAAACACCTTCTGCAGACTTCACTCAATTATCTTTGAATGAGAC
TCGATGGTGTAGAGATGGAAATGACAACAAGACAGAGTTTAAACAACGAG
ATTGTGATTTGCAATGTGAAGATTGGAAAGAGTTTGATGAGGAACAAGAT
GAAGGCTGCATCATATTGAATGGAAATACAACAACAACACCAAAGAAAGA
TAACCAACTTTGTGGAATGACTTCTAAACGTTGCCAAAGCAACCAATGTA
ACAAAGAGATCAACTTTTGTGCATTTTCTACATGTACAACCAGCAAACCA
ACTACTCGTAGTCAAAGTGGCACTCCAGAAGTTGAAAGTAATTCCCCTTG
CTTTAttcgtttattttattttgtctgATAAGTCTTTTTTTCTGTAGAAC
GCTTCGACGGTCATAACAATGTATTGGTAAAAAGTATAGAATCATACCAT
AAATAATAGAAGAAGCTGTATGTGTTTACACTCGACAGTTTTCATAAGGG
TCAGACATTTAATCAAACTATTGGTGGTCTGTAACTGCAAATAGCGATTG
CCGgtatcactttttgataaattataGAGTAGCTACTTGACTTTATCAAA
ACAGTGTACGAGTCCTTACTTATTATACCTTACAAAAGGCGATTCTTCTC
TTCTTTTAGAACAAGTTGGGCCAGGTGAAGCGAAGGAGAGTAACAAATTC
CTTTACATTTCCATTCCAATGTTTCTGGTGCTGTTTGCATTGGGTATATT
GGTAGGCATATTGGCTTTCAAGAGGTACCACCAAAAGAAATGTCTGAATT
TCATCATGAGGCCAAACCAAGTCGACGTCGGAggtttgaatttatttatc
gttaatgatacaattttcaaattttcttacctGTTTTGCTAAGAGACTGA
ATGTTCTGCAAATTTGCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaagttacaca
acatgcacacaaccatcttgaagactttgctggtcgcaaatgataatgga
aagcaaaacttaaaattcataactatgcggggaagctcattatttccccc
cgttttgctttaaactcgcttttgattggtctatgaatttgggcgattga
tttaccgccttggcggaataaacacacaaccataataaataaatTCAACA
GGGCAgcggtgtagcaattaatttcaactgggagtcctctcttctgtgcc
aagaactggcagtgttttttaaactttaaaacaatgttaaatgaagacta
gattgtttgttatggctgtgcaagttgtgacgagagtgtgcatgttgtgt
aacttgacggcagcccgctttctgaaagtctgataagagatatctataaa
TTGTTAttgccattcattccattccattatTCAGTCAAAgtgtgcgccaa
ggttagaaaaggttagaaaaacacaatctgcatccggaactgcgtgaaaa
atagtttgatcaatttcaacaagaactgtatatattaatattaatataaa
tgatcaaattccaTAGACactttgtcataattttgcaagtccaataatag
gagatgtgatgtcatcatttggttcccgtcatctgatttacggtcagcag
gtagagctggagagtcggaaagctttaccgctgctttgctggatttccac
tgtcgacctctgcacgctctgtgtttaaaagttttcaaatcgaagtagag
agccgcatgcttatggagagtaaaccgaaaacaccagtttatccacggtt
tctcaattttaaaattcggatcagtccacacgaattccctttcaacaaga
tgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctttatcacaaacacgtcca
agtccaaaaaagcacgattgcatccagtctttatatcaaatttatacagt
agctgtacttttgtaaactttatcaaattcctataacattataacaccat
aaatccccctagaggcaaacaagaaaaatatgctattattgcaaaaacta
ttaaaaagcagcaataaaaagtatcagaaaattcaacataaacaaaaact
tgagcaaacggctttaaaccttcaaaggatGTAGAAAAAGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Naaatcatgtgtttgatttgccgagttaaaaaaataaatgacagaaattg
aatcttgcaacagatttacactggaaatactttggtacaacactgactta
tcgacttatcacatctgaatATTGCtcgagccgccatcttgaaactacat
tatgatctgtataaacaacgcacgctaaaagtacccaaaaagttaacccg
atcggaagaaagtttagaaatcaaagtgagatcggaaaatcggatttttt
ttttgccgtcttatggtggaactggaaaattttacctatttgaatgctca
gcttaggctgaccaattagtCATCAAAAAATGGATAAATAGTACATTtga
aatttgcgattttttatGTATCTTGTAAGTcttattttcatgattttttt
cacaGAAGAAAGAGGAAACGTGAATTTAGCATATCAATCGTCAGTTATCG
AGAAGCGACCAAACGCACAATCTGTTTATTATGCCAACGAGTCGGATAGT
GTTCATTGTGACACTTTTGATGAAGAATCGAAAAGCTGATAAAGTGTTAT
CGTGAATGTGCAGAATTGATGTGTGCCAGATTGTTTTCGTAACTTTTTGA
AAGTTGTATAAATTAAGTCTTTAATTGACGACATTAAATTGTCAGGTCCA
TCGTGTATTTCATCaatcttttggaaatttttgatcatGGAAATAATGAT
AGTGACTTGACTTTGGCTCTTTCggaatcttttaaaaatatcaaccaaaa
tctgcataaattgAACCTTTGTTCCTTGAGATTTCAAACTAAGACCTTTC
TAAACCTCTTTTTGTAAAATACTGCTcagattgaattaaaaaatattttt
ataactaACACAATTAACTGTaaatataatttcaaagaaaaattgcatGT
TTATTTATAATGATTcgtattttttagtttttccagattttagaattgca
aaatttttatgaagattcaaatgatattgaaaatagagaagataattttt
ttatgaaacctACATTTTATAGAGAAAATTCTCAAACAGGAAATTTAATG
AATAGTTATATACATAACTGGTACCTAATAATATCATcgatgttttaaat
atttt

Coding sequence (CDS) from alignment at sc0000066:272763..283617+

>TCONS_00006246 ID=TCONS_00006246|Name=TCONS_00006246|organism=Clytia hemisphaerica|type=CDS|length=4140bp|location=Sequence derived from alignment at sc0000066:272763..283617+ (Clytia hemisphaerica)
ATGAACACGCCATCAAATATTGATTGCCCTCTACTCTTCGTCAAAACTTG
CCAATCCAGCATAGCATCTTACTCTTTTTGCAAATATGTGcctgattttt
caaactgccattgCTCTGATTGGATTGCTAAAGAGAGAAAAGTAGCGCCT
GACTTCTCAGCTATTCATCAGATTTTCGAACGCACGTGCTCGTCATCTTA
TAATAACTCAACCAGAATCGAAAGTAAAGAAACACAAAATGCAACCATCC
ATTCATGCCAGGATTGGGAGAAACCGGATGATAAGCTAGAGATGAACTCT
TGTCTTTTTATCAACAATAACACACTTGCACTGAACAGTGCATGCGCTAG
TATTGAGCTTAAAAGATGTTCATCTTCAATGCAAAACATCAACATATGTC
GCTACATTGATAAAAAATGCCCAACTTGTACTCAATGGAGTAAAACTTCA
TACTATAACATTTCTTCTGACTTGAAAGtgaaagctgaaaattttctcag
taTTTGTCCAAACGGCACAATCAATGAAAAGTCTGAAAACATAAATTGTG
TCTTGGATTGTTCAAGTTGGCAAAAAGTGGAACCTGACTCTCATTGTGAT
CAATATGAGAATCAAAAGCCAGattgttttgaaaacaaacaGAAACGAAG
TTGTTCGTCAGTGAATTGTCAATTCAATCTTTCCATTTGTAAATACATAG
GCGTGACTTGTCCTCATTGTAACCCATGGAGTGAAATCGAGAAAACACCT
TCTGCAGACTTCACTCAATTATCTTTGAATGAGACTCGATGGTGTAGAGA
TGGAAATGACAACAAGACAGAGTTTAAACAACGAGATTGTGATTTGCAAT
GTGAAGATTGGAAAGAGTTTGATGAGGAACAAGATGAAGGCTGCATCATA
TTGAATGGAAATACAACAACAACACCAAAGAAAGATAACCAACTTTGTGG
AATGACTTCTAAACGTTGCCAAAGCAACCAATGTAACAAAGAGATCAACT
TTTGTGCATTTTCTACATGTACAACCAGCAAACCAACTACTCGTAGTCAA
AGTGGCACTCCAGAAGTTGAAAAACAAGTTGGGCCAGGTGAAGCGAAGGA
GAGTAACAAATTCCTTTACATTTCCATTCCAATGTTTCTGGTGCTGTTTG
CATTGGGTATATTGGTAGGCATATTGGCTTTCAAGAGGTACCACCAAAAG
AAATGTCTGAATTTCATCATGAGGCCAAACCAAGTCGACGTCGGAgAAGA
AAGAGGAAACGTGAATTTAGCATATCAATCGTCAGTTATCGAGAAGCGAC
CAAACGCACAATCTGTTTATTATGCCAACGAGTCGGATAGTGTTCATTGT
GACACTTTTGATGAAGAATCGAAAAGCTGAATGAACACGCCATCAAATAT
TGATTGCCCTCTACTCTTCGTCAAAACTTGCCAATCCAGCATAGCATCTT
ACTCTTTTTGCAAATATGTGcctgatttttcaaactgccattgCTCTGAT
TGGATTGCTAAAGAGAGAAAAGTAGCGCCTGACTTCTCAGCTATTCATCA
GATTTTCGAACGCACGTGCTCGTCATCTTATAATAACTCAACCAGAATCG
AAAGTAAAGAAACACAAAATGCAACCATCCATTCATGCCAGGATTGGGAG
AAACCGGATGATAAGCTAGAGATGAACTCTTGTCTTTTTATCAACAATAA
CACACTTGCACTGAACAGTGCATGCGCTAGTATTGAGCTTAAAAGATGTT
CATCTTCAATGCAAAACATCAACATATGTCGCTACATTGATAAAAAATGC
CCAACTTGTACTCAATGGAGTAAAACTTCATACTATAACATTTCTTCTGA
CTTGAAAGtgaaagctgaaaattttctcagtaTTTGTCCAAACGGCACAA
TCAATGAAAAGTCTGAAAACATAAATTGTGTCTTGGATTGTTCAAGTTGG
CAAAAAGTGGAACCTGACTCTCATTGTGATCAATATGAGAATCAAAAGCC
AGattgttttgaaaacaaacaGAAACGAAGTTGTTCGTCAGTGAATTGTC
AATTCAATCTTTCCATTTGTAAATACATAGGCGTGACTTGTCCTCATTGT
AACCCATGGAGTGAAATCGAGAAAACACCTTCTGCAGACTTCACTCAATT
ATCTTTGAATGAGACTCGATGGTGTAGAGATGGAAATGACAACAAGACAG
AGTTTAAACAACGAGATTGTGATTTGCAATGTGAAGATTGGAAAGAGTTT
GATGAGGAACAAGATGAAGGCTGCATCATATTGAATGGAAATACAACAAC
AACACCAAAGAAAGATAACCAACTTTGTGGAATGACTTCTAAACGTTGCC
AAAGCAACCAATGTAACAAAGAGATCAACTTTTGTGCATTTTCTACATGT
ACAACCAGCAAACCAACTACTCGTAGTCAAAGTGGCACTCCAGAAGTTGA
AAAACAAGTTGGGCCAGGTGAAGCGAAGGAGAGTAACAAATTCCTTTACA
TTTCCATTCCAATGTTTCTGGTGCTGTTTGCATTGGGTATATTGGTAGGC
ATATTGGCTTTCAAGAGGTACCACCAAAAGAAATGTCTGAATTTCATCAT
GAGGCCAAACCAAGTCGACGTCGGAgAAGAAAGAGGAAACGTGAATTTAG
CATATCAATCGTCAGTTATCGAGAAGCGACCAAACGCACAATCTGTTTAT
TATGCCAACGAGTCGGATAGTGTTCATTGTGACACTTTTGATGAAGAATC
GAAAAGCTGAATGAACACGCCATCAAATATTGATTGCCCTCTACTCTTCG
TCAAAACTTGCCAATCCAGCATAGCATCTTACTCTTTTTGCAAATATGTG
cctgatttttcaaactgccattgCTCTGATTGGATTGCTAAAGAGAGAAA
AGTAGCGCCTGACTTCTCAGCTATTCATCAGATTTTCGAACGCACGTGCT
CGTCATCTTATAATAACTCAACCAGAATCGAAAGTAAAGAAACACAAAAT
GCAACCATCCATTCATGCCAGGATTGGGAGAAACCGGATGATAAGCTAGA
GATGAACTCTTGTCTTTTTATCAACAATAACACACTTGCACTGAACAGTG
CATGCGCTAGTATTGAGCTTAAAAGATGTTCATCTTCAATGCAAAACATC
AACATATGTCGCTACATTGATAAAAAATGCCCAACTTGTACTCAATGGAG
TAAAACTTCATACTATAACATTTCTTCTGACTTGAAAGtgaaagctgaaa
attttctcagtaTTTGTCCAAACGGCACAATCAATGAAAAGTCTGAAAAC
ATAAATTGTGTCTTGGATTGTTCAAGTTGGCAAAAAGTGGAACCTGACTC
TCATTGTGATCAATATGAGAATCAAAAGCCAGattgttttgaaaacaaac
aGAAACGAAGTTGTTCGTCAGTGAATTGTCAATTCAATCTTTCCATTTGT
AAATACATAGGCGTGACTTGTCCTCATTGTAACCCATGGAGTGAAATCGA
GAAAACACCTTCTGCAGACTTCACTCAATTATCTTTGAATGAGACTCGAT
GGTGTAGAGATGGAAATGACAACAAGACAGAGTTTAAACAACGAGATTGT
GATTTGCAATGTGAAGATTGGAAAGAGTTTGATGAGGAACAAGATGAAGG
CTGCATCATATTGAATGGAAATACAACAACAACACCAAAGAAAGATAACC
AACTTTGTGGAATGACTTCTAAACGTTGCCAAAGCAACCAATGTAACAAA
GAGATCAACTTTTGTGCATTTTCTACATGTACAACCAGCAAACCAACTAC
TCGTAGTCAAAGTGGCACTCCAGAAGTTGAAAAACAAGTTGGGCCAGGTG
AAGCGAAGGAGAGTAACAAATTCCTTTACATTTCCATTCCAATGTTTCTG
GTGCTGTTTGCATTGGGTATATTGGTAGGCATATTGGCTTTCAAGAGGTA
CCACCAAAAGAAATGTCTGAATTTCATCATGAGGCCAAACCAAGTCGACG
TCGGAgAAGAAAGAGGAAACGTGAATTTAGCATATCAATCGTCAGTTATC
GAGAAGCGACCAAACGCACAATCTGTTTATTATGCCAACGAGTCGGATAG
TGTTCATTGTGACACTTTTGATGAAGAATCGAAAAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003572XLOC_003572Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006246-proteinTCONS_00006246-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006246-exon-sc0000066-1491911889:272763..272915TCONS_00006246-exon-sc0000066-1491911889:272763..272915Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1510915933:272763..272915TCONS_00006246-exon-sc0000066-1510915933:272763..272915Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1575043694:272763..272915TCONS_00006246-exon-sc0000066-1575043694:272763..272915Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1491911889:275816..275948TCONS_00006246-exon-sc0000066-1491911889:275816..275948Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1510915933:275816..275948TCONS_00006246-exon-sc0000066-1510915933:275816..275948Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1575043694:275816..275948TCONS_00006246-exon-sc0000066-1575043694:275816..275948Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1491911889:276666..276797TCONS_00006246-exon-sc0000066-1491911889:276666..276797Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1510915933:276666..276797TCONS_00006246-exon-sc0000066-1510915933:276666..276797Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1575043694:276666..276797TCONS_00006246-exon-sc0000066-1575043694:276666..276797Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1491911889:277152..277249TCONS_00006246-exon-sc0000066-1491911889:277152..277249Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1510915933:277152..277249TCONS_00006246-exon-sc0000066-1510915933:277152..277249Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1575043694:277152..277249TCONS_00006246-exon-sc0000066-1575043694:277152..277249Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1491911889:277523..277681TCONS_00006246-exon-sc0000066-1491911889:277523..277681Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1510915933:277523..277681TCONS_00006246-exon-sc0000066-1510915933:277523..277681Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1575043694:277523..277681TCONS_00006246-exon-sc0000066-1575043694:277523..277681Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1491911889:278737..279999TCONS_00006246-exon-sc0000066-1491911889:278737..279999Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1510915933:278737..279999TCONS_00006246-exon-sc0000066-1510915933:278737..279999Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1575043694:278737..279999TCONS_00006246-exon-sc0000066-1575043694:278737..279999Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1491911889:280322..280495TCONS_00006246-exon-sc0000066-1491911889:280322..280495Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1510915933:280322..280495TCONS_00006246-exon-sc0000066-1510915933:280322..280495Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1575043694:280322..280495TCONS_00006246-exon-sc0000066-1575043694:280322..280495Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1491911889:282918..283617TCONS_00006246-exon-sc0000066-1491911889:282918..283617Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1510915933:282918..283617TCONS_00006246-exon-sc0000066-1510915933:282918..283617Clytia hemisphaericaexon
TCONS_00006246-exon-sc0000066-1575043694:282918..283617TCONS_00006246-exon-sc0000066-1575043694:282918..283617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:272763..283617 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.128332	0	0	0.054229	0	0	0	0.138148	0	0	0	0	0	0.58995	0.579464	0.256572	0	0	0.663073	0	0.115206
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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