TCONS_00006222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006222
Unique NameTCONS_00006222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006222 ID=TCONS_00006222|Name=TCONS_00006222|organism=Clytia hemisphaerica|type=transcript|length=886bp
AGAAAAGTCACCCAGCTCAATCATTCAAGCTAGAAATTGGACTggtgaaa
agaaaataatgagaTCGTACATTGCAATATGCTTCTTGTTTGGCTTAACA
AGCGCTTTCATATTTGGAAAGAAAGACCCAGTTTATCCTGACTGGGATGC
ATTGAGCATCACATTTGGAAAATTCACCAGTCTTCCACAAACAGAAGATG
AAGCCGTTAGCTCTGAAGAATGGACGCCTTATGGCGGTTGTGGATGCAAG
AATGcgACAAAACCATACCAAGGTAAACGATACAGAGGACCTAGAGGGAC
CAACAACCTTTTATTTGGTCCACATAAAAATGTGGTTGGCATTCAAATTG
TATTACCTGATAACTTCAACATTGCTAAAAATTGGAAAGGAGCTCACGTT
AGAGAAGGCAACACCTTCGTCTTGACCGCATATTTTACTGACCCGAATTT
AATCTGCTCCGGAAAACGAATCGCACCAAAAGGTTACGTTGGAGATAATC
TTTATATTGTGATGAACGATGGACCTGTCAAAATTCCGTTGAAAGAATCA
GATATTGGAGCCACCAAATGGACCAAAGGAAAATGCTTCTACGGAATGGG
TCAACATTACTGGTATGACGTCTCCAAGGATATGGACTGTAATGATTTCG
CGCCTTGGTTTTTGTTgtataatggtggaaatttgaaTGCTTTCGGATTC
GCAGATTTCGGTATAATGGAGAACAGTCGAGTGGAAAACCCACCACAATT
TGCCATTCCTctcTTCTTTCAAGAGAAGCCAGTTTGTCTGGAGAGAAAAC
CACATGACCTCATGACCACACAACATATTTTCCTTCAGAGAAGACCTTAT
TTCAACTATTGTTAAATTGAAAGATATAACCATGTG
Run BLAST on NCBI

protein sequence of TCONS_00006222-protein

>TCONS_00006222-protein ID=TCONS_00006222-protein|Name=TCONS_00006222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
EKSPSSIIQARNWTGEKKIMRSYIAICFLFGLTSAFIFGKKDPVYPDWDA
LSITFGKFTSLPQTEDEAVSSEEWTPYGGCGCKNATKPYQGKRYRGPRGT
NNLLFGPHKNVVGIQIVLPDNFNIAKNWKGAHVREGNTFVLTAYFTDPNL
ICSGKRIAPKGYVGDNLYIVMNDGPVKIPLKESDIGATKWTKGKCFYGMG
QHYWYDVSKDMDCNDFAPWFLLYNGGNLNAFGFADFGIMENSRVENPPQF
AIPLFFQEKPVCLERKPHDLMTTQHIFLQRRPYFNYC
Run BLAST on NCBI

transcript from alignment at sc0000066:199432..202487+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006222 ID=TCONS_00006222|Name=TCONS_00006222|organism=Clytia hemisphaerica|type=transcript|length=3056bp|location=Sequence derived from alignment at sc0000066:199432..202487+ (Clytia hemisphaerica)
AGAAAAGTCACCCAGCTCAATCATTCAAGCTAGAAATTGGACTggtgaaa
agaaaataatgagaTCGTACATTGCAATATGCTTCTTGTTTGGCTTAACA
AGCGCTTTCATATTTGGAAAGAAAGACCCAGGTAATACACAGAAAAGTGT
GACAGAAAAGAGGCTAAAATGCTCTAATGCAATCAAAAGTAAACCACGTT
TTCAACAGGCCTATTTGAGGCTGGGTTGAAAGTCATATTacttaccgtga
aaagcacaaaatcatatattgaccagggggggggggtcttgcagttactc
cttgacactatgtggagtaactgcaattttggacattttctacagacacc
accacccttgcagttattccatagtgtactaactgatttcaccctcaaaa
ttggtgtataccacccccaaaaatgccaaatttggcaattttttcactga
attcctcatttttgataccattttactgggtttGTCTTATCAACGACCGT
TCAAatgttaaatatctcaatcattttccaagtttgttaaaatatctttc
atgccttaattgaagaaaaaattttgtgatttttttttgacttttgaaaa
aaatgttttgaatttttttgcttccggaatttttaaaaacctaaaatttt
aagtgaaaaattgaaaaatgtgctcacttagtacacaatatactaccaaa
atcgacaattttgggcttaggcaccacccatgttgcagttagtccactgg
tggagtaagtgttttcccaaaatttggtttatataccaccacggtagtaa
ttgtcatagtgtttatataataactgcatgacccccccctgtattgacct
gtgccgacgaatcgagattctttTCAgtgcgcaatcaacgcagagaaaag
taaccatgacgaccatccaagatcttggatgagggtCATAGTCGATAtat
ttattcccgtcgttgaaaacacaactcagaaATATCATCaacgcttttta
aaaagagaaacacaAGATTTCTCTATTATTACGATCCCATTGAATTAATA
TTACCATAATTAATaatttagtaattactgttatacatttgggaatcatg
tataagatttcttttgaaagaaactcatttcaattacacttggaagTTTC
TAGGGAATTCGTCAATAGTAAacatgcatactgatacagtctgctagaca
ttaatatggtaatatttgctcttcatctttgattctttctacagtgatta
gattgacgcatgcgcgataaaatttctattattggtcttcagaggttgat
atattctttgaaaactcaacctctgatactcagggtaaatATTACTATGT
CAATAATTGCGCTGAATTCAACTAGAAATATGCTAACTAACTGTCGGCTT
CTGTTATCTTTTTTTGTAGTTTATCCTGACTGGGATGCATTGAGCATCAC
ATTTGGAAAATTCACCAGTCTTCCACAAACAGAAGATGAAGCCGTTAGCT
CTGAAGAATGGACGCCTTATGGCGGTTGTGGATGCAAGAATGGTACGTGA
GTATAGACCGGGGTGTACAAAAGGGCGTAATTCTGCATGGCGAGCATTAT
GATTACCCTCACTAGCGGGTGTGTGGGGGTCTTATTGGTGGGCTTTCATC
AAAAgccaaaatattttccaaaattaatacaataatgGAAGTCCTTTTAA
GACACGCCAGGGAAGAGGAGGTTTgatgaaatgaaagaattaGGTCTTCT
TGCAACAAAAAATGCTtataaattctttatttttttagcgACAAAACCAT
ACCAAGGTAAACGATACAGAGGACCTAGAGGGACCAACAACCTTTTATTT
GGTCCACATAAAAATGTGGTTGGCATTCAAATTGTATTACCTGATAACTT
CAACATTGCTAAAAATTGGAAAGGAGCTCACGTTAGAGAAGGCAACACCT
TCGTCTTGACCGCATATTTTACTGACCCGAATTTAATCTGCTCCGGAAAA
CGAATCGCACCAAAAGGTTACGTTGGAGATAATCTTTATATTGTGATGAA
CGATGGACCTGTCAAAATTCCGTTGAAAGAATCAGATATTGGAGCCACCA
AATGGACCAAAGGAAAATGCTTCTACGGAATGGGTTAGTAAGATGGACCT
AGAGTCGAGACTTTACGAGAATAGTCCAATATCCTAAAGTTTCCCCAATG
ACTAGAATTTTAGAAATAGTTTTTCCTAGAAATAGTGTCTATTATTTTCA
CGAGGTTCACAGCCTGCTGACTCGGTTATCTATAAACTAAACAGTGGACT
TGAACCGGGAACAAATGGTTTGTGACACTGACGCCCTAGACAACTTGGCC
TTTATAGCATAAACATCTGCAGAAATTGAAAGTACTTGCTACTACTCCAG
GTTTGTTAGGTCTAtcgtaaataaataaaataactgCTCGAAATTTCAAC
GTTTTTTCTAGGTCAACATTACTGGTATGACGTCTCCAAGGATATGGACT
GTAATGATTTCGCGCCTTGGTTTTTGTTgtataatggtggaaatttgaaT
GCTTTCGGATTCGCAGATTTCGGTATAATGGAGAACAGTCGAGTGGAAAA
CCCACCACAATTTGCCATTCCTGTAAGTGCACTATTTGGccctttttctg
gaaaaaaatgatgagtcaatgtttttctttcaatgaaatcaagataactt
ttgattgaaatttcaaGGTTGAGTATTTTTGAAGTTTGTTCCCTTCTCCA
ACAATGAATGATTACTTAGAAGTTGTTTTTCCTTCGTAAACATTTGTTAG
AGATGTTAAGTTAATAACAAGAAGCTGTATAAGCTTTTAATATAAGTTAA
TATTGGTCACCGTCCTTAGTAAATGAGCGAAATGGGACAGataatttaat
ttaaaatgtcataaattttttttatttcagctcTTCTTTCAAGAGAAGCC
AGTTTGTCTGGAGAGAAAACCACATGACCTCATGACCACACAACATATTT
TCCTTCAGAGAAGACCTTATTTCAACTATTGTTAAATTGAAAGATATAAC
CATGTG

Coding sequence (CDS) from alignment at sc0000066:199432..202487+

>TCONS_00006222 ID=TCONS_00006222|Name=TCONS_00006222|organism=Clytia hemisphaerica|type=CDS|length=4320bp|location=Sequence derived from alignment at sc0000066:199432..202487+ (Clytia hemisphaerica)
GAAAAGTCACCCAGCTCAATCATTCAAGCTAGAAATTGGACTggtgaaaa
gaaaataatgagaTCGTACATTGCAATATGCTTCTTGTTTGGCTTAACAA
GCGCTTTCATATTTGGAAAGAAAGACCCAGTTTATCCTGACTGGGATGCA
TTGAGCATCACATTTGGAAAATTCACCAGTCTTCCACAAACAGAAGATGA
AGCCGTTAGCTCTGAAGAATGGACGCCTTATGGCGGTTGTGGATGCAAGA
ATGcgACAAAACCATACCAAGGTAAACGATACAGAGGACCTAGAGGGACC
AACAACCTTTTATTTGGTCCACATAAAAATGTGGTTGGCATTCAAATTGT
ATTACCTGATAACTTCAACATTGCTAAAAATTGGAAAGGAGCTCACGTTA
GAGAAGGCAACACCTTCGTCTTGACCGCATATTTTACTGACCCGAATTTA
ATCTGCTCCGGAAAACGAATCGCACCAAAAGGTTACGTTGGAGATAATCT
TTATATTGTGATGAACGATGGACCTGTCAAAATTCCGTTGAAAGAATCAG
ATATTGGAGCCACCAAATGGACCAAAGGAAAATGCTTCTACGGAATGGGT
CAACATTACTGGTATGACGTCTCCAAGGATATGGACTGTAATGATTTCGC
GCCTTGGTTTTTGTTgtataatggtggaaatttgaaTGCTTTCGGATTCG
CAGATTTCGGTATAATGGAGAACAGTCGAGTGGAAAACCCACCACAATTT
GCCATTCCTctcTTCTTTCAAGAGAAGCCAGTTTGTCTGGAGAGAAAACC
ACATGACCTCATGACCACACAACATATTTTCCTTCAGAGAAGACCTTATT
TCAACTATTGTTAAGAAAAGTCACCCAGCTCAATCATTCAAGCTAGAAAT
TGGACTggtgaaaagaaaataatgagaTCGTACATTGCAATATGCTTCTT
GTTTGGCTTAACAAGCGCTTTCATATTTGGAAAGAAAGACCCAGTTTATC
CTGACTGGGATGCATTGAGCATCACATTTGGAAAATTCACCAGTCTTCCA
CAAACAGAAGATGAAGCCGTTAGCTCTGAAGAATGGACGCCTTATGGCGG
TTGTGGATGCAAGAATGcgACAAAACCATACCAAGGTAAACGATACAGAG
GACCTAGAGGGACCAACAACCTTTTATTTGGTCCACATAAAAATGTGGTT
GGCATTCAAATTGTATTACCTGATAACTTCAACATTGCTAAAAATTGGAA
AGGAGCTCACGTTAGAGAAGGCAACACCTTCGTCTTGACCGCATATTTTA
CTGACCCGAATTTAATCTGCTCCGGAAAACGAATCGCACCAAAAGGTTAC
GTTGGAGATAATCTTTATATTGTGATGAACGATGGACCTGTCAAAATTCC
GTTGAAAGAATCAGATATTGGAGCCACCAAATGGACCAAAGGAAAATGCT
TCTACGGAATGGGTCAACATTACTGGTATGACGTCTCCAAGGATATGGAC
TGTAATGATTTCGCGCCTTGGTTTTTGTTgtataatggtggaaatttgaa
TGCTTTCGGATTCGCAGATTTCGGTATAATGGAGAACAGTCGAGTGGAAA
ACCCACCACAATTTGCCATTCCTctcTTCTTTCAAGAGAAGCCAGTTTGT
CTGGAGAGAAAACCACATGACCTCATGACCACACAACATATTTTCCTTCA
GAGAAGACCTTATTTCAACTATTGTTAAGAAAAGTCACCCAGCTCAATCA
TTCAAGCTAGAAATTGGACTggtgaaaagaaaataatgagaTCGTACATT
GCAATATGCTTCTTGTTTGGCTTAACAAGCGCTTTCATATTTGGAAAGAA
AGACCCAGTTTATCCTGACTGGGATGCATTGAGCATCACATTTGGAAAAT
TCACCAGTCTTCCACAAACAGAAGATGAAGCCGTTAGCTCTGAAGAATGG
ACGCCTTATGGCGGTTGTGGATGCAAGAATGcgACAAAACCATACCAAGG
TAAACGATACAGAGGACCTAGAGGGACCAACAACCTTTTATTTGGTCCAC
ATAAAAATGTGGTTGGCATTCAAATTGTATTACCTGATAACTTCAACATT
GCTAAAAATTGGAAAGGAGCTCACGTTAGAGAAGGCAACACCTTCGTCTT
GACCGCATATTTTACTGACCCGAATTTAATCTGCTCCGGAAAACGAATCG
CACCAAAAGGTTACGTTGGAGATAATCTTTATATTGTGATGAACGATGGA
CCTGTCAAAATTCCGTTGAAAGAATCAGATATTGGAGCCACCAAATGGAC
CAAAGGAAAATGCTTCTACGGAATGGGTCAACATTACTGGTATGACGTCT
CCAAGGATATGGACTGTAATGATTTCGCGCCTTGGTTTTTGTTgtataat
ggtggaaatttgaaTGCTTTCGGATTCGCAGATTTCGGTATAATGGAGAA
CAGTCGAGTGGAAAACCCACCACAATTTGCCATTCCTctcTTCTTTCAAG
AGAAGCCAGTTTGTCTGGAGAGAAAACCACATGACCTCATGACCACACAA
CATATTTTCCTTCAGAGAAGACCTTATTTCAACTATTGTTAAGAAAAGTC
ACCCAGCTCAATCATTCAAGCTAGAAATTGGACTggtgaaaagaaaataa
tgagaTCGTACATTGCAATATGCTTCTTGTTTGGCTTAACAAGCGCTTTC
ATATTTGGAAAGAAAGACCCAGTTTATCCTGACTGGGATGCATTGAGCAT
CACATTTGGAAAATTCACCAGTCTTCCACAAACAGAAGATGAAGCCGTTA
GCTCTGAAGAATGGACGCCTTATGGCGGTTGTGGATGCAAGAATGcgACA
AAACCATACCAAGGTAAACGATACAGAGGACCTAGAGGGACCAACAACCT
TTTATTTGGTCCACATAAAAATGTGGTTGGCATTCAAATTGTATTACCTG
ATAACTTCAACATTGCTAAAAATTGGAAAGGAGCTCACGTTAGAGAAGGC
AACACCTTCGTCTTGACCGCATATTTTACTGACCCGAATTTAATCTGCTC
CGGAAAACGAATCGCACCAAAAGGTTACGTTGGAGATAATCTTTATATTG
TGATGAACGATGGACCTGTCAAAATTCCGTTGAAAGAATCAGATATTGGA
GCCACCAAATGGACCAAAGGAAAATGCTTCTACGGAATGGGTCAACATTA
CTGGTATGACGTCTCCAAGGATATGGACTGTAATGATTTCGCGCCTTGGT
TTTTGTTgtataatggtggaaatttgaaTGCTTTCGGATTCGCAGATTTC
GGTATAATGGAGAACAGTCGAGTGGAAAACCCACCACAATTTGCCATTCC
TctcTTCTTTCAAGAGAAGCCAGTTTGTCTGGAGAGAAAACCACATGACC
TCATGACCACACAACATATTTTCCTTCAGAGAAGACCTTATTTCAACTAT
TGTTAAGAAAAGTCACCCAGCTCAATCATTCAAGCTAGAAATTGGACTgg
tgaaaagaaaataatgagaTCGTACATTGCAATATGCTTCTTGTTTGGCT
TAACAAGCGCTTTCATATTTGGAAAGAAAGACCCAGTTTATCCTGACTGG
GATGCATTGAGCATCACATTTGGAAAATTCACCAGTCTTCCACAAACAGA
AGATGAAGCCGTTAGCTCTGAAGAATGGACGCCTTATGGCGGTTGTGGAT
GCAAGAATGcgACAAAACCATACCAAGGTAAACGATACAGAGGACCTAGA
GGGACCAACAACCTTTTATTTGGTCCACATAAAAATGTGGTTGGCATTCA
AATTGTATTACCTGATAACTTCAACATTGCTAAAAATTGGAAAGGAGCTC
ACGTTAGAGAAGGCAACACCTTCGTCTTGACCGCATATTTTACTGACCCG
AATTTAATCTGCTCCGGAAAACGAATCGCACCAAAAGGTTACGTTGGAGA
TAATCTTTATATTGTGATGAACGATGGACCTGTCAAAATTCCGTTGAAAG
AATCAGATATTGGAGCCACCAAATGGACCAAAGGAAAATGCTTCTACGGA
ATGGGTCAACATTACTGGTATGACGTCTCCAAGGATATGGACTGTAATGA
TTTCGCGCCTTGGTTTTTGTTgtataatggtggaaatttgaaTGCTTTCG
GATTCGCAGATTTCGGTATAATGGAGAACAGTCGAGTGGAAAACCCACCA
CAATTTGCCATTCCTctcTTCTTTCAAGAGAAGCCAGTTTGTCTGGAGAG
AAAACCACATGACCTCATGACCACACAACATATTTTCCTTCAGAGAAGAC
CTTATTTCAACTATTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003568XLOC_003568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006222-exon-sc0000066-1491911889:199432..199562TCONS_00006222-exon-sc0000066-1491911889:199432..199562Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1510915933:199432..199562TCONS_00006222-exon-sc0000066-1510915933:199432..199562Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1575043694:199432..199562TCONS_00006222-exon-sc0000066-1575043694:199432..199562Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1491911889:200851..200973TCONS_00006222-exon-sc0000066-1491911889:200851..200973Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1510915933:200851..200973TCONS_00006222-exon-sc0000066-1510915933:200851..200973Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1575043694:200851..200973TCONS_00006222-exon-sc0000066-1575043694:200851..200973Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1491911889:201220..201564TCONS_00006222-exon-sc0000066-1491911889:201220..201564Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1510915933:201220..201564TCONS_00006222-exon-sc0000066-1510915933:201220..201564Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1575043694:201220..201564TCONS_00006222-exon-sc0000066-1575043694:201220..201564Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1491911889:201893..202053TCONS_00006222-exon-sc0000066-1491911889:201893..202053Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1510915933:201893..202053TCONS_00006222-exon-sc0000066-1510915933:201893..202053Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1575043694:201893..202053TCONS_00006222-exon-sc0000066-1575043694:201893..202053Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1491911889:202362..202487TCONS_00006222-exon-sc0000066-1491911889:202362..202487Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1510915933:202362..202487TCONS_00006222-exon-sc0000066-1510915933:202362..202487Clytia hemisphaericaexon
TCONS_00006222-exon-sc0000066-1575043694:202362..202487TCONS_00006222-exon-sc0000066-1575043694:202362..202487Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006222-proteinTCONS_00006222-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:199432..202487 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	24.7667	15.4175	1.92653	1.63994	1.12438	1.80508	1.32732	0.837624	46.6099	46.1482	4.01753	6.20253	4.69473	5.30776	158.846	145.232	32.735	32.9277	11.4581	15.6399	11.6134	14.1873	7.43609	7.06386	0.116329	0.0592607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top