TCONS_00006213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006213
Unique NameTCONS_00006213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006213 ID=TCONS_00006213|Name=TCONS_00006213|organism=Clytia hemisphaerica|type=transcript|length=793bp
CATTTTAATTGATTTGGAAGGGGAATCTTTGAgctatgattaaaaaaatt
gttttttattaagtCATATTTTAACCAATACCATTTCATATAAGATCTCA
GGCAGCTACTTTTTCTACCACAAGTATCTATCCCTTTATGAAGATTTATC
CTGTCATTTTCTTTTCTAATAATTTACTATTTTTCAGCGAGAATGATGAA
CTATCAGCAGTTCGGAGGGGAAAATAGGGACTTTCGCATGCTTGAAGATC
GCAAACAAAAGctaatgatgatgatggaaaGCAATGTTCCAAACAAACAA
CAAATTCAGATGGAAATTCGCAACATTGATAATCAGATGCATCAATACCG
TAGCATGCAGCAACAGACCATGCATCATCAACAACAGCAACACCATCAAC
ATCAAGTGATAAACAAGATGCAGCAGACTCAGATGTGGAATCAAGGCTAC
AACGTTGATTCTGGTATACAGACTGCCGCACCATCAGTCAAAGATTTTGA
CGATGATGTTTCATCACATCACTCGCACAGCTCATTCCAGCAATTTAATG
AATGGGATCAAAACATGGCAGGCGGCGATGCAATGGAcactcaaatgaat
gaccagTTTAACAACTCTCGCAGcTCTCGTGTTCGTCATGCAATGTTTCC
AGAGACTATGGATGATGGAATGGAAGTCCCACAAACACAAATTGATCAGC
ANAAAACGTGAAAACTCTCTgatcaaaattgaaacaattaaaaatgcgTA
AAAAGATAATTGCTTTATGCTAATTATAAGAAAATATGTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00006213-protein

>TCONS_00006213-protein ID=TCONS_00006213-protein|Name=TCONS_00006213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MMNYQQFGGENRDFRMLEDRKQKLMMMMESNVPNKQQIQMEIRNIDNQMH
QYRSMQQQTMHHQQQQHHQHQVINKMQQTQMWNQGYNVDSGIQTAAPSVK
DFDDDVSSHHSHSSFQQFNEWDQNMAGGDAMDTQMNDQFNNSRSSRVRHA
MFPETMDDGMEVPQTQIDQXKT
Run BLAST on NCBI

transcript from alignment at sc0000066:3931..5868+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006213 ID=TCONS_00006213|Name=TCONS_00006213|organism=Clytia hemisphaerica|type=transcript|length=1938bp|location=Sequence derived from alignment at sc0000066:3931..5868+ (Clytia hemisphaerica)
CATTTTAATTGATTTGGAAGGGGAATCTTTGAgctatgattaaaaaaatt
gttttttattaagtCATATTTTAACCAATACCATTTCATATAAGATCTCA
GGCAGCTACTTTTTCTACCACAAGTATCTATCCCTTTATGAAGATTTATC
CTGTCATTTTCTTTTCTAATAATTTACTATTTTTCAGCGAGAATGATGAA
CTATCAGCAGTTCGGAGGGGAAAATAGGGTAAGTCAGTAGTTCAGAAATA
TCTATATTTATAATCTTATGTGTCATTAAACTAAGAAATGCTTAAAACGA
GCTTTTGGTTACTGTTTGTAGTTCACATTTCTACTAGCCAATATTTTAGC
AGAATAATGAAATTGTTTCACTGTGATTTTCAGGACTTTCGCATGCTTGA
AGATCGCAAACAAAAGctaatgatgatgatggaaaGCAATGTTCCAAACA
AGTAAGGCTATATGATATTAGCTATCTTCTTTAATTATAACAACCACACG
AACCTTTGGTTCAATCAAAGTTTTAAGtttaattttaagatttctattga
tttctttcttctttaaaaCTAAATAGCTCATTATTAActtcaaaagtctt
ttttttttattccctACTTTGTTGTGCTAggatctgagaatgtctgtctg
tgtgtatgtATTATGTCATAaatattttgacttaaaaactgGTCGGATTT
GCCTGAACTTTAGAACTATTGCACCATTGTCACACCCGGCCAaggttttt
tcattgttttcaaaaaaaatttatttctgtAGCCTAGGTTGAGTTCTTAA
TTACTGATACAATCTTTGAATNttcaaaaaaattttatttttgtagccTA
GGTTGAGCTCTTAATTACTGATACAATTtctgaaaagtttgaaaatactG
AAGTAAAACAAGGCTTAGTGTGGTACACGTGTTCAAGCATGTTCAACTAT
TTCCAAGTGTTCTGTAATCCTTTTTTTATTAATATGGCTAGTACTTAACT
TTTTTGGTTGTATACATTCAATAAGTAATAAAGACCCCATTAATATTCTT
TTCCAAGACAACAAATTCAGATGGAAATTCGCAACATTGATAATCAGATG
CATCAATACCGTAGCATGCAGCAACAGACCATGCATCATCAACAACAGCA
ACACCATCAACATCAAGGTTTGCAAGAAAACTCATTAGCCTAGAAATTCA
CTCAGTGATAAaagttacaagcttttttaAGGACGTTGAGAGAAGCCTAA
CTTTATGGAAAGATCATAGAGACTAATCAATTTTGATACAATCAATGGCA
TAGTTTCATTTTCACATACcttttggaagatttttttttcttgaaataat
gttgaagaaaattttcctTATTCTTGTAGTGATAAACAAGATGCAGCAGA
CTCAGATGTGGAATCAAGGCTACAACGTTGATTCTGGTATACAGACTGCC
GCACCATCAGTCAAAGATTTTGACGATGATGTTTCATCACATCACTCGCA
CAGCTCATTCCAGCAATTTAATGAATGGGATCAAAACATGGCAGGCGGCG
ATGCAATGGAcactcaaatgaatgaccagTTTAACAACTCTCGCAGGTAT
AAAGAGTTTTGAGCTATTTTAAGTGATTTAGGATTTGCATGCCTTGACTG
ATCTTATGTTTGAATAAACTCAGTTTTCATGCTAttgtttcttgttttct
ttatttttctaccATTAGACTCATGTTCAGTATGGAAAgcaaatgatatt
tttttattcattttttagcTCTCGTGTTCGTCATGCAATGTTTCCAGAGA
CTATGGATGATGGAATGGAAGTCCCACAAACACAAATTGATCAGCANAAA
ACGTGAAAACTCTCTgatcaaaattgaaacaattaaaaatgcgTAAAAAG
ATAATTGCTTTATGCTAATTATAAGAAAATATGTTTTC

Coding sequence (CDS) from alignment at sc0000066:3931..5868+

>TCONS_00006213 ID=TCONS_00006213|Name=TCONS_00006213|organism=Clytia hemisphaerica|type=CDS|length=2595bp|location=Sequence derived from alignment at sc0000066:3931..5868+ (Clytia hemisphaerica)
ATGATGAACTATCAGCAGTTCGGAGGGGAAAATAGGGACTTTCGCATGCT
TGAAGATCGCAAACAAAAGctaatgatgatgatggaaaGCAATGTTCCAA
ACAAACAACAAATTCAGATGGAAATTCGCAACATTGATAATCAGATGCAT
CAATACCGTAGCATGCAGCAACAGACCATGCATCATCAACAACAGCAACA
CCATCAACATCAAGTGATAAACAAGATGCAGCAGACTCAGATGTGGAATC
AAGGCTACAACGTTGATTCTGGTATACAGACTGCCGCACCATCAGTCAAA
GATTTTGACGATGATGTTTCATCACATCACTCGCACAGCTCATTCCAGCA
ATTTAATGAATGGGATCAAAACATGGCAGGCGGCGATGCAATGGAcactc
aaatgaatgaccagTTTAACAACTCTCGCAGcTCTCGTGTTCGTCATGCA
ATGTTTCCAGAGACTATGGATGATGGAATGGAAGTCCCACAAACACAAAT
TGATCAGCANAAAACGTGAATGATGAACTATCAGCAGTTCGGAGGGGAAA
ATAGGGACTTTCGCATGCTTGAAGATCGCAAACAAAAGctaatgatgatg
atggaaaGCAATGTTCCAAACAAACAACAAATTCAGATGGAAATTCGCAA
CATTGATAATCAGATGCATCAATACCGTAGCATGCAGCAACAGACCATGC
ATCATCAACAACAGCAACACCATCAACATCAAGTGATAAACAAGATGCAG
CAGACTCAGATGTGGAATCAAGGCTACAACGTTGATTCTGGTATACAGAC
TGCCGCACCATCAGTCAAAGATTTTGACGATGATGTTTCATCACATCACT
CGCACAGCTCATTCCAGCAATTTAATGAATGGGATCAAAACATGGCAGGC
GGCGATGCAATGGAcactcaaatgaatgaccagTTTAACAACTCTCGCAG
cTCTCGTGTTCGTCATGCAATGTTTCCAGAGACTATGGATGATGGAATGG
AAGTCCCACAAACACAAATTGATCAGCANAAAACGTGAATGATGAACTAT
CAGCAGTTCGGAGGGGAAAATAGGGACTTTCGCATGCTTGAAGATCGCAA
ACAAAAGctaatgatgatgatggaaaGCAATGTTCCAAACAAACAACAAA
TTCAGATGGAAATTCGCAACATTGATAATCAGATGCATCAATACCGTAGC
ATGCAGCAACAGACCATGCATCATCAACAACAGCAACACCATCAACATCA
AGTGATAAACAAGATGCAGCAGACTCAGATGTGGAATCAAGGCTACAACG
TTGATTCTGGTATACAGACTGCCGCACCATCAGTCAAAGATTTTGACGAT
GATGTTTCATCACATCACTCGCACAGCTCATTCCAGCAATTTAATGAATG
GGATCAAAACATGGCAGGCGGCGATGCAATGGAcactcaaatgaatgacc
agTTTAACAACTCTCGCAGcTCTCGTGTTCGTCATGCAATGTTTCCAGAG
ACTATGGATGATGGAATGGAAGTCCCACAAACACAAATTGATCAGCANAA
AACGTGAATGATGAACTATCAGCAGTTCGGAGGGGAAAATAGGGACTTTC
GCATGCTTGAAGATCGCAAACAAAAGctaatgatgatgatggaaaGCAAT
GTTCCAAACAAACAACAAATTCAGATGGAAATTCGCAACATTGATAATCA
GATGCATCAATACCGTAGCATGCAGCAACAGACCATGCATCATCAACAAC
AGCAACACCATCAACATCAAGTGATAAACAAGATGCAGCAGACTCAGATG
TGGAATCAAGGCTACAACGTTGATTCTGGTATACAGACTGCCGCACCATC
AGTCAAAGATTTTGACGATGATGTTTCATCACATCACTCGCACAGCTCAT
TCCAGCAATTTAATGAATGGGATCAAAACATGGCAGGCGGCGATGCAATG
GAcactcaaatgaatgaccagTTTAACAACTCTCGCAGcTCTCGTGTTCG
TCATGCAATGTTTCCAGAGACTATGGATGATGGAATGGAAGTCCCACAAA
CACAAATTGATCAGCANAAAACGTGAATGATGAACTATCAGCAGTTCGGA
GGGGAAAATAGGGACTTTCGCATGCTTGAAGATCGCAAACAAAAGctaat
gatgatgatggaaaGCAATGTTCCAAACAAACAACAAATTCAGATGGAAA
TTCGCAACATTGATAATCAGATGCATCAATACCGTAGCATGCAGCAACAG
ACCATGCATCATCAACAACAGCAACACCATCAACATCAAGTGATAAACAA
GATGCAGCAGACTCAGATGTGGAATCAAGGCTACAACGTTGATTCTGGTA
TACAGACTGCCGCACCATCAGTCAAAGATTTTGACGATGATGTTTCATCA
CATCACTCGCACAGCTCATTCCAGCAATTTAATGAATGGGATCAAAACAT
GGCAGGCGGCGATGCAATGGAcactcaaatgaatgaccagTTTAACAACT
CTCGCAGcTCTCGTGTTCGTCATGCAATGTTTCCAGAGACTATGGATGAT
GGAATGGAAGTCCCACAAACACAAATTGATCAGCANAAAACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003559XLOC_003559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006213-exon-sc0000066-1491911889:3931..4158TCONS_00006213-exon-sc0000066-1491911889:3931..4158Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1510915933:3931..4158TCONS_00006213-exon-sc0000066-1510915933:3931..4158Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1575043694:3931..4158TCONS_00006213-exon-sc0000066-1575043694:3931..4158Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1491911889:4314..4381TCONS_00006213-exon-sc0000066-1491911889:4314..4381Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1510915933:4314..4381TCONS_00006213-exon-sc0000066-1510915933:4314..4381Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1575043694:4314..4381TCONS_00006213-exon-sc0000066-1575043694:4314..4381Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1491911889:4988..5097TCONS_00006213-exon-sc0000066-1491911889:4988..5097Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1510915933:4988..5097TCONS_00006213-exon-sc0000066-1510915933:4988..5097Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1575043694:4988..5097TCONS_00006213-exon-sc0000066-1575043694:4988..5097Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1491911889:5310..5526TCONS_00006213-exon-sc0000066-1491911889:5310..5526Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1510915933:5310..5526TCONS_00006213-exon-sc0000066-1510915933:5310..5526Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1575043694:5310..5526TCONS_00006213-exon-sc0000066-1575043694:5310..5526Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1491911889:5699..5868TCONS_00006213-exon-sc0000066-1491911889:5699..5868Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1510915933:5699..5868TCONS_00006213-exon-sc0000066-1510915933:5699..5868Clytia hemisphaericaexon
TCONS_00006213-exon-sc0000066-1575043694:5699..5868TCONS_00006213-exon-sc0000066-1575043694:5699..5868Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006213-proteinTCONS_00006213-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:3931..5868 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.58896	4.44303	7.18183	7.83963	500.105	381.354	346.043	381.878	181.154	262.288	153.608	185.934	221.903	207.877	126.706	140.454	179.839	206.955	155.997	210.558	148.835	153.962	51.9417	71.2982	117.076	115.221	228.906	225.978	111.493	123.379
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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