TCONS_00006206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006206
Unique NameTCONS_00006206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006206 ID=TCONS_00006206|Name=TCONS_00006206|organism=Clytia hemisphaerica|type=transcript|length=802bp
CAAACTTatgtcttcgaaataaaaaatgaaaagttcttgtcACATATTGT
TTCATCCTTGCAATGGGGTTGATTTCAGAACGGGATTTTTCGTTTTACTT
GATTTTCGACGTGTTTCGTGAAACGTATTCGAACGTTTTCGATCATTTAT
CGATGAAATTTGTTCGATTTGTTTTCCATTGTTCGTAGAGCTGGTTTTTC
GTTGAAATGGAGATTTCTGCTCATTTCTTTTGTAGCTTTCGTCAAAAGAC
GCATATTTTGTCAATCGTTTTTTATTCGATCCACTAATACCACAACTGAC
CAAAGATTCTTGCATTCGAGTGATTTCACGCAGCGAgcgcaatttttctt
tttccagcTCAGCAACTGTATGATTATTAGTACGCGCTATATCTTTATTC
TTGTTTACAGCTTTATCGACGCTTCTACTGACCGATAACAGTGGGTCATA
CAAAACACCATCCTTTTGAAATGACGCCATGATGAATATTATTCAGCTGT
GTATCAAAACCACGTGTAGAGCCCTTTTTGACTGAATGTTTTTCGAATAT
ATCTTATGCAAAATCTAGCTGACTATTTTATCGATATAAAGTTTCACATC
AATTACAGAAAACCATGTAATAACAATTTGGAGACGATATCCAAACTTTC
ACCCAGCGTTGTTTGAATGTTCTTTATTGTACGTTGGATGGACGTTGTGT
TGACGTTGTATTGACGTTAGTTTTCGCTGATAAGCGACATAAGTAGACGT
CGATACACGTAGAATAACAAGCCCCCTTGCCTTTAAAGCAACTAAACTTA
TT
Run BLAST on NCBI

protein sequence of TCONS_00006206-protein

>TCONS_00006206-protein ID=TCONS_00006206-protein|Name=TCONS_00006206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MASFQKDGVLYDPLLSVSRSVDKAVNKNKDIARTNNHTVAELEKEKLRSL
REITRMQESLVSCGISGSNKKRLTKYASFDESYKRNEQKSPFQRKTSSTN
NGKQIEQISSINDRKRSNTFHETRRKSSKTKNPVLKSTPLQG
Run BLAST on NCBI

transcript from alignment at sc0000063:641923..642724

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006206 ID=TCONS_00006206|Name=TCONS_00006206|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at sc0000063:641923..642724 (Clytia hemisphaerica)
AATAAGTTTAGTTGCTTTAAAGGCAAGGGGGCTTGTTATTCTACGTGTAT
CGACGTCTACTTATGTCGCTTATCAGCGAAAACTAACGTCAATACAACGT
CAACACAACGTCCATCCAACGTACAATAAAGAACATTCAAACAACGCTGG
GTGAAAGTTTGGATATCGTCTCCAAATTGTTATTACATGGTTTTCTGTAA
TTGATGTGAAACTTTATATCGATAAAATAGTCAGCTAGATTTTGCATAAG
ATATATTCGAAAAACATTCAGTCAAAAAGGGCTCTACACGTGGTTTTGAT
ACACAGCTGAATAATATTCATCATGGCGTCATTTCAAAAGGATGGTGTTT
TGTATGACCCACTGTTATCGGTCAGTAGAAGCGTCGATAAAGCTGTAAAC
AAGAATAAAGATATAGCGCGTACTAATAATCATACAGTTGCTGAgctgga
aaaagaaaaattgcgcTCGCTGCGTGAAATCACTCGAATGCAAGAATCTT
TGGTCAGTTGTGGTATTAGTGGATCGAATAAAAAACGATTGACAAAATAT
GCGTCTTTTGACGAAAGCTACAAAAGAAATGAGCAGAAATCTCCATTTCA
ACGAAAAACCAGCTCTACGAACAATGGAAAACAAATCGAACAAATTTCAT
CGATAAATGATCGAAAACGTTCGAATACGTTTCACGAAACACGTCGAAAA
TCAAGTAAAACGAAAAATCCCGTTCTGAAATCAACCCCATTGCAAGGATG
AAACAATATGTgacaagaacttttcattttttatttcgaagacatAAGTT
TG

Coding sequence (CDS) from alignment at sc0000063:641923..642724

>TCONS_00006206 ID=TCONS_00006206|Name=TCONS_00006206|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0000063:641923..642724 (Clytia hemisphaerica)
ATGGCGTCATTTCAAAAGGATGGTGTTTTGTATGACCCACTGTTATCGGT
CAGTAGAAGCGTCGATAAAGCTGTAAACAAGAATAAAGATATAGCGCGTA
CTAATAATCATACAGTTGCTGAgctggaaaaagaaaaattgcgcTCGCTG
CGTGAAATCACTCGAATGCAAGAATCTTTGGTCAGTTGTGGTATTAGTGG
ATCGAATAAAAAACGATTGACAAAATATGCGTCTTTTGACGAAAGCTACA
AAAGAAATGAGCAGAAATCTCCATTTCAACGAAAAACCAGCTCTACGAAC
AATGGAAAACAAATCGAACAAATTTCATCGATAAATGATCGAAAACGTTC
GAATACGTTTCACGAAACACGTCGAAAATCAAGTAAAACGAAAAATCCCG
TTCTGAAATCAACCCCATTGCAAGGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003552XLOC_003552Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006206-proteinTCONS_00006206-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006206-exon-sc0000063-1491911889:641923..642724TCONS_00006206-exon-sc0000063-1491911889:641923..642724Clytia hemisphaericaexon
TCONS_00006206-exon-sc0000063-1510915933:641923..642724TCONS_00006206-exon-sc0000063-1510915933:641923..642724Clytia hemisphaericaexon
TCONS_00006206-exon-sc0000063-1575043694:641923..642724TCONS_00006206-exon-sc0000063-1575043694:641923..642724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:641923..642724 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.403404	0.637551	17.0757	14.834	9.22604	10.8035	11.3953	9.28384	0.318315	0.0413217	0	0	1.43719	2.53185	2.03514	1.06481	1.85103	1.69288	0.548777	0.374188	0.385405	0.859912	0	0.0875505	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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