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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006203 ID=TCONS_00006203|Name=TCONS_00006203|organism=Clytia hemisphaerica|type=transcript|length=861bp
AAAAAATAGCAACGGGTAACATACACGAAACATAAACGACGGTGATCCAA
ATTAAAGTCATGACAGCTTTTTTATTACGTTGTTTAATTCGAGCGTCATC
TACAGTAAGCTTGGCAGAGTTCTGTCTCTGTTTACTAAGATGTAATTTAG
TCCATGAGTTATAGATAGTCATTATTATGGTCTGCGATGCGAAAAACACG
AACATAAGGAACCAGTAGGTGGATAAAAGTGAACGCGTTGTGTACGCTAT
GGGATTAAAAACGAAATAGGTAAGCAGCGCATAACCAAGGAAAATGATCA
CACTTGCAGATAAATAACCATaaacaaatttcttttcaatcacTCGGAGA
GGGTGACGAACTTTATAGTGCCGTAACAGGGAAATCAAGACAAATGTTGT
GACACCTAATCCAactgaaaatactgaaaaaGCCATACCAGGGGGTTGTG
TGTAacaattatttttgtttgtaaTATTCAGAACAAGAAAATAAGGGTTA
GTAAGCAGACCGTAGGATAGATCTGTAGCACTAACGTATATATAGAGTGC
TTTAGACAGGGTGATGGGCTTCGATGTTTTTATGATACCAATAATAAGAG
CCAGGTTAGTTATTGTGACGAATATAGTCATAGATACAATGATAGTTATA
TTGATTGTCAATGCTTGGCGATTAGTGACGGATTTGGAACTGCTTCGTTG
CTTGTCCGATGAAGCGTTTTGATTTAGTGTACTGTGATCCAGCGAAGTAT
TTTGAAAGATTAAGTCACCAAGTTGTGTATATacaaattgaaaacaaata
ccAAATCTTCTCAATCTTTCCTGGTCCATAATGATTGATTTAACAGATTG
CAAGCTCTGAA Run BLAST on NCBI protein sequence of TCONS_00006203-protein >TCONS_00006203-protein ID=TCONS_00006203-protein|Name=TCONS_00006203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
QSLQSVKSIIMDQERLRRFGICFQFVYTQLGDLIFQNTSLDHSTLNQNAS
SDKQRSSSKSVTNRQALTINITIIVSMTIFVTITNLALIIGIIKTSKPIT
LSKALYIYVSATDLSYGLLTNPYFLVLNITNKNNCYTQPPGMAFSVFSVG
LGVTTFVLISLLRHYKVRHPLRVIEKKFVYGYLSASVIIFLGYALLTYFV
FNPIAYTTRSLLSTYWFLMFVFFASQTIIMTIYNSWTKLHLSKQRQNSAK
LTVDDARIKQRNKKAVMTLIWITVVYVSCMLPVAIF Run BLAST on NCBI transcript from alignment at sc0000063:603511..604371 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006203 ID=TCONS_00006203|Name=TCONS_00006203|organism=Clytia hemisphaerica|type=transcript|length=861bp|location=Sequence derived from alignment at sc0000063:603511..604371 (Clytia hemisphaerica)
TTCAGAGCTTGCAATCTGTTAAATCAATCATTATGGACCAGGAAAGATTG
AGAAGATTTggtatttgttttcaatttgtATATACACAACTTGGTGACTT
AATCTTTCAAAATACTTCGCTGGATCACAGTACACTAAATCAAAACGCTT
CATCGGACAAGCAACGAAGCAGTTCCAAATCCGTCACTAATCGCCAAGCA
TTGACAATCAATATAACTATCATTGTATCTATGACTATATTCGTCACAAT
AACTAACCTGGCTCTTATTATTGGTATCATAAAAACATCGAAGCCCATCA
CCCTGTCTAAAGCACTCTATATATACGTTAGTGCTACAGATCTATCCTAC
GGTCTGCTTACTAACCCTTATTTTCTTGTTCTGAATAttacaaacaaaaa
taattgtTACACACAACCCCCTGGTATGGCtttttcagtattttcagtTG
GATTAGGTGTCACAACATTTGTCTTGATTTCCCTGTTACGGCACTATAAA
GTTCGTCACCCTCTCCGAgtgattgaaaagaaatttgtttATGGTTATTT
ATCTGCAAGTGTGATCATTTTCCTTGGTTATGCGCTGCTTACCTATTTCG
TTTTTAATCCCATAGCGTACACAACGCGTTCACTTTTATCCACCTACTGG
TTCCTTATGTTCGTGTTTTTCGCATCGCAGACCATAATAATGACTATCTA
TAACTCATGGACTAAATTACATCTTAGTAAACAGAGACAGAACTCTGCCA
AGCTTACTGTAGATGACGCTCGAATTAAACAACGTAATAAAAAAGCTGTC
ATGACTTTAATTTGGATCACCGTCGTTTATGTTTCGTGTATGTTACCCGT
TGCTATTTTTT Coding sequence (CDS) from alignment at sc0000063:603511..604371 >TCONS_00006203 ID=TCONS_00006203|Name=TCONS_00006203|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at sc0000063:603511..604371 (Clytia hemisphaerica)
CAGAGCTTGCAATCTGTTAAATCAATCATTATGGACCAGGAAAGATTGAG
AAGATTTggtatttgttttcaatttgtATATACACAACTTGGTGACTTAA
TCTTTCAAAATACTTCGCTGGATCACAGTACACTAAATCAAAACGCTTCA
TCGGACAAGCAACGAAGCAGTTCCAAATCCGTCACTAATCGCCAAGCATT
GACAATCAATATAACTATCATTGTATCTATGACTATATTCGTCACAATAA
CTAACCTGGCTCTTATTATTGGTATCATAAAAACATCGAAGCCCATCACC
CTGTCTAAAGCACTCTATATATACGTTAGTGCTACAGATCTATCCTACGG
TCTGCTTACTAACCCTTATTTTCTTGTTCTGAATAttacaaacaaaaata
attgtTACACACAACCCCCTGGTATGGCtttttcagtattttcagtTGGA
TTAGGTGTCACAACATTTGTCTTGATTTCCCTGTTACGGCACTATAAAGT
TCGTCACCCTCTCCGAgtgattgaaaagaaatttgtttATGGTTATTTAT
CTGCAAGTGTGATCATTTTCCTTGGTTATGCGCTGCTTACCTATTTCGTT
TTTAATCCCATAGCGTACACAACGCGTTCACTTTTATCCACCTACTGGTT
CCTTATGTTCGTGTTTTTCGCATCGCAGACCATAATAATGACTATCTATA
ACTCATGGACTAAATTACATCTTAGTAAACAGAGACAGAACTCTGCCAAG
CTTACTGTAGATGACGCTCGAATTAAACAACGTAATAAAAAAGCTGTCAT
GACTTTAATTTGGATCACCGTCGTTTATGTTTCGTGTATGTTACCCGTTG
CTATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006203-exon-sc0000063-1491911889:603511..604371 | TCONS_00006203-exon-sc0000063-1491911889:603511..604371 | Clytia hemisphaerica | exon |
| TCONS_00006203-exon-sc0000063-1510915933:603511..604371 | TCONS_00006203-exon-sc0000063-1510915933:603511..604371 | Clytia hemisphaerica | exon |
| TCONS_00006203-exon-sc0000063-1575043694:603511..604371 | TCONS_00006203-exon-sc0000063-1575043694:603511..604371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000063 | supercontig | sc0000063:603511..604371 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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