TCONS_00006194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006194
Unique NameTCONS_00006194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006194 ID=TCONS_00006194|Name=TCONS_00006194|organism=Clytia hemisphaerica|type=transcript|length=301bp
atattgtctcccaATAGTACCATCCGCGAAATCtgaaaatttcgcgaata
agcttACCTCGAAATTTATttcccgcgaaagtttattccATAAGAATAAA
TATTACACAGCTTACCatgatttcgaaaaaaaacaaataaaccgATGCTT
CATCATCAATACTATCTGTTGTTGTTTCGTTGCCATGGGTGCTATTCCCC
CATTTCGAAAGGTTGGTATAAGTTGTCCTATTCATGTACATTATTCTCGT
AATCATTCTTTGATGCaccaaatttaaagtaaacGCTTTTATTGATatct
a
Run BLAST on NCBI

transcript from alignment at sc0000063:378548..378848

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006194 ID=TCONS_00006194|Name=TCONS_00006194|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at sc0000063:378548..378848 (Clytia hemisphaerica)
tagatATCAATAAAAGCgtttactttaaatttggtGCATCAAAGAATGAT
TACGAGAATAATGTACATGAATAGGACAACTTATACCAACCTTTCGAAAT
GGGGGAATAGCACCCATGGCAACGAAACAACAACAGATAGTATTGATGAT
GAAGCATcggtttatttgttttttttcgaaatcatGGTAAGCTGTGTAAT
ATTTATTCTTATggaataaactttcgcgggaaATAAATTTCGAGGTaagc
ttattcgcgaaattttcaGATTTCGCGGATGGTACTATtgggagacaata
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003540XLOC_003540Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006194-exon-sc0000063-1491911889:378548..378848TCONS_00006194-exon-sc0000063-1491911889:378548..378848Clytia hemisphaericaexon
TCONS_00006194-exon-sc0000063-1510915933:378548..378848TCONS_00006194-exon-sc0000063-1510915933:378548..378848Clytia hemisphaericaexon
TCONS_00006194-exon-sc0000063-1575043694:378548..378848TCONS_00006194-exon-sc0000063-1575043694:378548..378848Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:378548..378848 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.385149	0.375581	0	0	0	0	0	0.463572	0.324557	1.20605	1.17062	0	4.77188	4.15536	7.65451	7.65825	2.60217	4.74158	2.04711	1.71372	0.744767	0.544907	2.20802	2.81038	0	0	0	0	4.48068	3.04878
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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