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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006173 ID=TCONS_00006173|Name=TCONS_00006173|organism=Clytia hemisphaerica|type=transcript|length=1910bpRun BLAST on NCBI protein sequence of TCONS_00006173-protein >TCONS_00006173-protein ID=TCONS_00006173-protein|Name=TCONS_00006173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp MNHEKLYTPVEEAWHYSSQPITIEKFKTNCCSKINTADRQPLHQPTMESVRun BLAST on NCBI transcript from alignment at sc0000063:669982..678823- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006173 ID=TCONS_00006173|Name=TCONS_00006173|organism=Clytia hemisphaerica|type=transcript|length=8842bp|location=Sequence derived from alignment at sc0000063:669982..678823- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000063:669982..678823- >TCONS_00006173 ID=TCONS_00006173|Name=TCONS_00006173|organism=Clytia hemisphaerica|type=CDS|length=11160bp|location=Sequence derived from alignment at sc0000063:669982..678823- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00006173 vs. Swiss-Prot (Human)
Match: SNPC3 (snRNA-activating protein complex subunit 3 OS=Homo sapiens GN=SNAPC3 PE=1 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 3.076e-57 Identity = 114/330 (34.55%), Postives = 177/330 (53.64%), Query Frame = 1
Query: 196 LASELEIDEETARDLQMVCDVSNLQCEYDVQ--------FDYNTFKIYERFPDDGE--LKTVRLCKDLKTKAEELFFIPTYIEPPDEDFSVDEDQIQDDEVIVCCTVMHP----KQKKNKRNLQTLLIGDTKLSELRDLIKCQMDRVVFQDMSENPDQLPDEDAQKLFPSSFFFIERTFYNDTRDPAHHDISKTIVEWAKHSDRYNMAGLGLLHSDVMETTCIKDIEIRLGYPYLFCHQGSCEHLILFTDMRLRQDSDPKLKKSYPYVSSDAQRRRKRCSICCIHLAKWVTINDELSFETPGLFCDKCFRYLHYDKDGRKISRFQAYPHI 1143
+A +L+ E A +L+ VC + L+C D + D T + +RF + E + R C+ +E F + D I++ E+I+ +++P K K++K L++G KL++LRD I+C D + + S PDQ P+ ++ L+ S+FF+ E TFYND R P D+S+TI+EW++ DR G G + ME D+ I+LG+PYL+CHQG CEH+I+ TD+RL D + YP + ++C +C ++ A+WVT ND + E P FCD CFR LHYD +G K+ F AYP++
Sbjct: 86 VARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEVIPENTDLVTLGVRKRFLEHREETITIDRACR------QETFVYEMESHAIGKKPENSADMIEEGELILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPEHISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDR----GYGKFQTARMEDFTFNDLCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYV 405 The following BLAST results are available for this feature:
BLAST of TCONS_00006173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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