TCONS_00006173-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006173-protein
Unique NameTCONS_00006173-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006173-protein ID=TCONS_00006173-protein|Name=TCONS_00006173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MNHEKLYTPVEEAWHYSSQPITIEKFKTNCCSKINTADRQPLHQPTMESV
KELASELEIDEETARDLQMVCDVSNLQCEYDVQFDYNTFKIYERFPDDGE
LKTVRLCKDLKTKAEELFFIPTYIEPPDEDFSVDEDQIQDDEVIVCCTVM
HPKQKKNKRNLQTLLIGDTKLSELRDLIKCQMDRVVFQDMSENPDQLPDE
DAQKLFPSSFFFIERTFYNDTRDPAHHDISKTIVEWAKHSDRYNMAGLGL
LHSDVMETTCIKDIEIRLGYPYLFCHQGSCEHLILFTDMRLRQDSDPKLK
KSYPYVSSDAQRRRKRCSICCIHLAKWVTINDELSFETPGLFCDKCFRYL
HYDKDGRKISRFQAYPHIPED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003520XLOC_003520Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006173TCONS_00006173Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022042snRNA-activating_su3
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022042snRNA-activating protein complex, subunit 3PFAMPF12251zf-SNAP50_Ccoord: 164..366
e-value: 9.4E-66
score: 221.2

Blast
[Close]
BLAST of TCONS_00006173-protein vs. Swiss-Prot (Human)
Match: SNPC3 (snRNA-activating protein complex subunit 3 OS=Homo sapiens GN=SNAPC3 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.058e-61
Identity = 114/330 (34.55%), Postives = 177/330 (53.64%), Query Frame = 0 
Query:   53 LASELEIDEETARDLQMVCDVSNLQCEYDVQ--------FDYNTFKIYERFPDDGE--LKTVRLCKDLKTKAEELFFIPTYIEPPDEDFSVDEDQIQDDEVIVCCTVMHP----KQKKNKRNLQTLLIGDTKLSELRDLIKCQMDRVVFQDMSENPDQLPDEDAQKLFPSSFFFIERTFYNDTRDPAHHDISKTIVEWAKHSDRYNMAGLGLLHSDVMETTCIKDIEIRLGYPYLFCHQGSCEHLILFTDMRLRQDSDPKLKKSYPYVSSDAQRRRKRCSICCIHLAKWVTINDELSFETPGLFCDKCFRYLHYDKDGRKISRFQAYPHI 368
            +A +L+   E A +L+ VC +  L+C  D +         D  T  + +RF +  E  +   R C+      +E F          +      D I++ E+I+   +++P    K K++K     L++G  KL++LRD I+C  D  +  + S  PDQ P+  ++ L+ S+FF+ E TFYND R P   D+S+TI+EW++  DR    G G   +  ME     D+ I+LG+PYL+CHQG CEH+I+ TD+RL    D   +  YP +        ++C +C ++ A+WVT ND  + E P  FCD CFR LHYD +G K+  F AYP++
Sbjct:   86 VARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEVIPENTDLVTLGVRKRFLEHREETITIDRACR------QETFVYEMESHAIGKKPENSADMIEEGELILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPEHISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDR----GYGKFQTARMEDFTFNDLCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYV 405
The following BLAST results are available for this feature:
BLAST of TCONS_00006173-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNPC37.058e-6134.55snRNA-activating protein complex subunit 3 OS=Homo... [more]
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