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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006172 ID=TCONS_00006172|Name=TCONS_00006172|organism=Clytia hemisphaerica|type=transcript|length=6615bpRun BLAST on NCBI protein sequence of TCONS_00006172-protein >TCONS_00006172-protein ID=TCONS_00006172-protein|Name=TCONS_00006172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2116bp QESQSLYLHKVSNISTGALCNDGSPAVYYLHNNMNSSKWMIYLEGGGGCNRun BLAST on NCBI transcript from alignment at sc0000063:644341..662320- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006172 ID=TCONS_00006172|Name=TCONS_00006172|organism=Clytia hemisphaerica|type=transcript|length=17980bp|location=Sequence derived from alignment at sc0000063:644341..662320- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000063:644341..662320- >TCONS_00006172 ID=TCONS_00006172|Name=TCONS_00006172|organism=Clytia hemisphaerica|type=CDS|length=107967bp|location=Sequence derived from alignment at sc0000063:644341..662320- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006172 vs. Swiss-Prot (Human)
Match: ABCG2 (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 4.639e-36 Identity = 100/268 (37.31%), Postives = 155/268 (57.84%), Query Frame = 3
Query: 1551 RVRKRSSY-----AMNKKIIKGVTAYFNPGQLVAIMGPSGSGKTTLLDVITARKHLEEAESNIFINGLPADETREWFIKNSGYVLQLATPYHEELTVRQNLTYSAMMRLPMKMKMQDKMWRVEQVLGQCGLYDVADVVVGDNSFTGGGLSGGQKRRLCIALQLLDLPSVIFLDEPTXXXXXXXXXXXXXXXXXXXXXXRLVVVTIHQPRIEIFHMFDAILLLCEGQVAYFGSPIIAPTMIAEAL---KDSGQTFDA-SNPADSIMDVL 2327
RV+ +S + + K+I+ + PG L AI+GP+G GK++LLDV+ ARK ++ ING P F NSGYV+Q LTVR+NL +SA +RL M +K R+ +V+ + GL VAD VG G+SGG+++R I ++L+ PS++FLDEPT+GLDS+++ +L L ++ GR ++ +IHQPR IF +FD++ LL G++ + G EAL + +G +A +NPAD +D++
Sbjct: 45 RVKLKSGFLPCRKPVEKEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSGLSGDVLINGAPRPAN---FKCNSGYVVQ-DDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVGTQFIR--GVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPA-------QEALGYFESAGYHCEAYNNPADFFLDII 298 The following BLAST results are available for this feature:
BLAST of TCONS_00006172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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