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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006137 ID=TCONS_00006137|Name=TCONS_00006137|organism=Clytia hemisphaerica|type=transcript|length=1283bp
GAAACATTGTAGCGTGCacaccaaaaaaagaaaaactattaCTATTAgag
atattttttattgatcAAGATCAATGATGCCTAGATCATTTTTAATTAAA
CGTATCGAGAAAGTACAAACTGGATTCTTTCCATGGCAAGATGAGATGTT
GGTCCAGAGCTGTTGTCTGGAGTATCGGATGGGATCGGAAGATCTGGATT
GTGATGAGCAAAAGGATAAAGACATTGAAGTTGTTAGTGAAGATGGGATT
GAAGAATCATCATCCGAAAAAGATTCCATTCGAAGTCAATCGCCAACGGA
AATCAAAATCCTGACACCATATCACAACACACCTCCACCTCCTCTCATCA
TTTACTCAAACAAAGCCACCAACTCTTGCCAAGAATCAAGTGAAGATACC
GGAAGTCACACATCTGAAGATACTGACTCTCTCGTTCCGTCCCCTCTCGG
CTGCAACGATCCAACATTCATCAATTATCACCAACAACAGCTGAAATCAC
CAACAGAACCGTCTGCATTTAAACCGTATCCTCATTATTATCCAAGTATG
GTCCAAAGTTTAGCAAACAGATGCATAACACCTTGGccaaatcatcatca
tcatcatccaaGTTATGAAGAAGCGAAAAAGCATCAATGTGAATATTGCC
TTAAATGGTTCCAAAGATCAAGTAGTTTATCAAATCACCGATTAATCCAT
AAGAACTCCAAATCATACAAATGCAACCAATGCAATATGAGTTTTCTTCG
TAAGTCTGACCTCGGTAAACACATGGTCACACACTCTGGATCAAAACCGT
ACCAATGTAACGTTTGTGGTAAACGCTTTTCACAATCTTCGAATATGCTG
ACTCATCAAAGACGTCATACCGGAATCCGTCCGTATTCTTGTGGTGTATG
CGGGAAGGCTTTTTACCGGAAAGTTGATGTCCGAAGACATGCTTCGGTTC
ATAGAAATTATTGAATACGAAATACGAAAACTTTATGAATATTTCTAGAC
GATTCAAAACTTCAGAGCAgcctacccagctggcacacagcgttgtgtca
acgttcacctaacgttatatggacgttgtgaacgttaaataaacgttgaa
acaacgttgtgtgcctgaTGGGTATAGACAGTAACGTCTACTACACTGCC
TGCGACTTTTCCGAATGTTTGGAGCCTGggttttaattcatttttcaacG
GTACTATTTTCGAAGCTCTTGTAGTACAGAAAAACTGAAACTGCGTCAGA
CCATTTGAAAGGCTGTTTGTGTAACTCAACAag Run BLAST on NCBI protein sequence of TCONS_00006137-protein >TCONS_00006137-protein ID=TCONS_00006137-protein|Name=TCONS_00006137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MMPRSFLIKRIEKVQTGFFPWQDEMLVQSCCLEYRMGSEDLDCDEQKDKD
IEVVSEDGIEESSSEKDSIRSQSPTEIKILTPYHNTPPPPLIIYSNKATN
SCQESSEDTGSHTSEDTDSLVPSPLGCNDPTFINYHQQQLKSPTEPSAFK
PYPHYYPSMVQSLANRCITPWPNHHHHHPSYEEAKKHQCEYCLKWFQRSS
SLSNHRLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGK
RFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRHASVHRNY Run BLAST on NCBI transcript from alignment at sc0000063:459919..464872+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006137 ID=TCONS_00006137|Name=TCONS_00006137|organism=Clytia hemisphaerica|type=transcript|length=4954bp|location=Sequence derived from alignment at sc0000063:459919..464872+ (Clytia hemisphaerica)
GAAACATTGTAGCGTGCacaccaaaaaaagaaaaactattaCTATTAgag
atattttttattgatcAAGATCAATGATGCCTAGATCATTTTTAATTAAA
CGTATCGAGAAAGTACAAACTGGATTCTTTCCATGGCAAGATGAGATGTT
GGTCCAGAGCTGTTGTCTGGAGTATCGGATGGGATCGGAAGATCTGGATT
GTGATGAGCAAAAGGATAAAGACATTGAAGTTGTTAGTGAAGATGGGATT
GAAGGTAAAGATCTTAAATATTTATTATGTGTTCTgatttacaccccttt
ctcaaagaccctgtgaatttttttccgccagtggggataaaaatgacgta
ctgaaacttgatggggattgatatccCTATATTTTCTTTTGGCTGGGGAT
TTCGattctttgttttcaagtcagaaaattcagtggggatgggaaaaata
gcaacTGTCTGTGAGAAATTACCCTTACTCATTTTACCCATCAAAAGCCG
AAATTTAGTACCGGTACTAACTTAAAATGGGAGATATACCTATTCCCAAC
CCACATGGTACTacaacttttttgagattcaaaaTCAGACACCACCACAT
TTTCCTGTGTCACTGTCTTTCTACTCTCACGATTTAACAAGACTTTgtac
aggttttttttttataaaaaattccaaaattttgaagctttcgaaagctc
ttaacttttttagttttaaaattaacaatgttcttaacttgttcttattt
tgatcattttgtgaatattttttaccatttttctaagaaattgggtgaat
gggtccaaaaagccttaaaatgttcttaacttgttattaacattttggct
agcgaagccttatgctcttatataatatagtttgttcttataaaaaaaca
tgtagaccAGTCAGGGTTGAAAAGGAATCACAACGATAGATAAGCGTTTA
TTCGCAATTGTTTgcatttgcaaaattttgttgtttacaGCTTTGAAAAA
CTAAGTGAGTTTATTTAAAACAAGAACAGTGTGATATCCGGTGGAAgcgg
gagactggggagactgcAGCTTCGCCagttttgagcaaatgagatttttc
tcGAATTCCTAGCGAATTTCATCTCATTCGGAGCCTTTAGCCTCTCTATC
TTTACGGTTGTTTCGCCGGACCTGATATCGACTCTTAAAATCTAGACTAA
TCTCCTCATAAATCAAAAGTAGGTACGAGAACGAGGTGGGGCatgggaac
gaggttgggtgATACGGAAGAGTGTTATTAACGGGTACAAAACTTTTTCA
TCAGGGAaaaatattacaatttttttctgcgAGGAGGGTGTCTGCGATAT
AGCGGattcttcaattttaatttcTCTGCTTATCTTTAGGGAGGTAAAAT
CTaaagtctttaaaaatttgaagaactgtactttaaagaaaaaggaaaaa
gaagtcCAATTTGTCACCACAAAAAATTAAATACCTAGATAAAAAAAGAC
CTGAATACACCTTTCCGACCGTAGTCTCGCAGTTAGGCGCATGCCggtta
attatccccctaaactcgatccaatccttttttgagacctttttctattg
tctgtaggtgcgaaaaaagactgggacggttttagggtggtaaaacggac
aaaaaaaagcccgcgcggcaattgtcGGCTGCAGTCGAAAAGATGTGTTG
AAGTTAGCGTGTCTGcctacccagctgacacacaacgttgtctcaacgtt
catctaacgttaaatggacgttgtgaacattaaattgacgctgaaagaac
gttgtgtgccagctgggtaaacTCCCAACTACATTGGAATGACTTCCTTC
ATCAATTTGTAAAATGATGAAACgacgaaaaagtgaaaattgtaCCAATT
CAAGCAAATAATTTTCACACACTTTGCAAAATAAGTTACTTTTTGCAAGA
AAGAAATGGTACTCACATACCCACGCTttcgatttgaaattttaattaat
ttgacCCATTAAAATATGCAATCAAAACGGCTGTATAATTAAGTAAACTA
TAAAGATAATTGTTAACTTTCCAACGAAACTGCTTAggtgtttttctatt
tttccaaaTTCAAAGGGAAAGCAAACTATGACATTTTTGCgagaataatt
ttttataagaacatacaaaatTCTTTAATGCTTTGGATGTTTCTTAACTA
TTTGAACTTCAAGTGTAAAGacgttcttaacatgttcttattttcaccat
atttAGTGAGAGTCTGCAAAtttttagaatgttcttaacttgttcttatt
gtcttggccattgaagcctccTTAGTTTGTTCTCACAAAAAAACGTTTAA
TTAATTGCAATCAGGTCAAAAATGATACCATGTGAATAATTTGGCTTTTG
AGCCTAATGCTGATTAAATGCTTTTTCATACCAGAACAATTCAAAAGTCA
ATCTTTCGCCAAAACCTTCTAGACCAATGCAAGGCTCCGATATGAGgaat
aatcgcacgatgggttattttttcttatttggcacgccctcaaagagagc
aattaatcgttaattgcatcctgtagagagcaattaatcgttaatNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNtttcctcgtcctttcggactcggaaaattaataacaaaaaaatcact
cgtgcaattatattcgaattgcactcgttatcatgtgattacatatacta
atcaaGAGAATATACTGTTTAATTCTGGAATAACATAAAAATGcatatta
attgtcatgggaaatatgaagcgtgaaaatcatgaaaaagtgaaaaatct
taaactaaaatttaccctttcttataaaaaacgtgtataattgTAACAGA
ATCATTGTTTCGAATGTGACCTTCATTTTCTGCACGTGTTCGAAAAATCT
AATTATTACtcattaaacaaaaaaaagttctCCGAAAACAACTTTGTGCT
AATTAAGACTTCCGTGTATAAGTCATACATGTggatttttttagttttcc
cttttttctaattttaagcGGAATTTTAAACAGTGgtaaaaattttgtaa
acagTGTTGAGTCACGTTGTATGTGTTGAAAGTGGTTGAAAGTGCAAGTG
CATAAATAGTAAATTTTCAGcacaaaacttcaaaataaactgttcctaaa
ttcaattttatatttataacaATAGCACACAAATTGTGTTTCCCAGTCAG
GTagagaaaggaaagaaaaactaGAACATTTTTTCAATCTAACTAAAATC
TGATCATTATTTCCATTCATTTTAGAATCATCATCCGAAAAAGATTCCAT
TCGAAGTCAATCGCCAACGGAAATCAAAATCCTGACACCATATCACAACA
CACCTCCACCTCCTCTCATCATTTACTCAAACAAAGCCACCAACTCTTGC
CAAGAATCAAGTGAAGATACCGGAAGTCACACATCTGAAGATACTGACTC
TCTCGTTCCGTCCCCTCTCGGCTGCAACGATCCAACATTCATCAATTATC
ACCAACAACAGCTGAAATCACCAACAGAACCGTCTGCATTTAAACCGTAT
CCTCATTATTATCCAAGTATGGTCCAAAGTTTAGCAAACAGATGCATAAC
ACCTTGGccaaatcatcatcatcatcatccaaGTTATGAAGAAGCGAAAA
AGCATCAATGTGAATATTGCCTTAAATGGTTCCAAAGATCAAGTAGTTTA
TCAAATCACCGATTAATCCATAAGAACTCCAAATCATACAAATGCAACCA
ATGCAATATGAGTTTTCTTCGTAAGTCTGACCTCGGTAAACACATGGTCA
CACACTCTGGATCAAAACCGTACCAATGTAACGTTTGTGGTAAACGCTTT
TCACAATCTTCGAATATGCTGACTCATCAAAGACGTCATACCGGAATCCG
TCCGTATTCTTGTGGTGTATGCGGGAAGGCTTTTTACCGGAAAGTTGATG
TCCGAAGACATGCTTCGGTTCATAGAAATTATTGAATACGAAATACGAAA
ACTTTATGAATATTTCTAGACGATTCAAAACTTCAGAGCAgcctacccag
ctggcacacagcgttgtgtcaacgttcacctaacgttatatggacgttgt
gaacgttaaataaacgttgaaacaacgttgtgtgcctgaTGGGTATAGAC
AGTAACGTCTACTACACTGCCTGCGACTTTTCCGAATGTTTGGAGCCTGg
gttttaattcatttttcaacGGTACTATTTTCGAAGCTCTTGTAGTACAG
AAAAACTGAAACTGCGTCAGACCATTTGAAAGGCTGTTTGTGTAACTCAA
CAag Coding sequence (CDS) from alignment at sc0000063:459919..464872+ >TCONS_00006137 ID=TCONS_00006137|Name=TCONS_00006137|organism=Clytia hemisphaerica|type=CDS|length=1782bp|location=Sequence derived from alignment at sc0000063:459919..464872+ (Clytia hemisphaerica)
ATGATGCCTAGATCATTTTTAATTAAACGTATCGAGAAAGTACAAACTGG
ATTCTTTCCATGGCAAGATGAGATGTTGGTCCAGAGCTGTTGTCTGGAGT
ATCGGATGGGATCGGAAGATCTGGATTGTGATGAGCAAAAGGATAAAGAC
ATTGAAGTTGTTAGTGAAGATGGGATTGAAGAATCATCATCCGAAAAAGA
TTCCATTCGAAGTCAATCGCCAACGGAAATCAAAATCCTGACACCATATC
ACAACACACCTCCACCTCCTCTCATCATTTACTCAAACAAAGCCACCAAC
TCTTGCCAAGAATCAAGTGAAGATACCGGAAGTCACACATCTGAAGATAC
TGACTCTCTCGTTCCGTCCCCTCTCGGCTGCAACGATCCAACATTCATCA
ATTATCACCAACAACAGCTGAAATCACCAACAGAACCGTCTGCATTTAAA
CCGTATCCTCATTATTATCCAAGTATGGTCCAAAGTTTAGCAAACAGATG
CATAACACCTTGGccaaatcatcatcatcatcatccaaGTTATGAAGAAG
CGAAAAAGCATCAATGTGAATATTGCCTTAAATGGTTCCAAAGATCAAGT
AGTTTATCAAATCACCGATTAATCCATAAGAACTCCAAATCATACAAATG
CAACCAATGCAATATGAGTTTTCTTCGTAAGTCTGACCTCGGTAAACACA
TGGTCACACACTCTGGATCAAAACCGTACCAATGTAACGTTTGTGGTAAA
CGCTTTTCACAATCTTCGAATATGCTGACTCATCAAAGACGTCATACCGG
AATCCGTCCGTATTCTTGTGGTGTATGCGGGAAGGCTTTTTACCGGAAAG
TTGATGTCCGAAGACATGCTTCGGTTCATAGAAATTATTGAATGATGCCT
AGATCATTTTTAATTAAACGTATCGAGAAAGTACAAACTGGATTCTTTCC
ATGGCAAGATGAGATGTTGGTCCAGAGCTGTTGTCTGGAGTATCGGATGG
GATCGGAAGATCTGGATTGTGATGAGCAAAAGGATAAAGACATTGAAGTT
GTTAGTGAAGATGGGATTGAAGAATCATCATCCGAAAAAGATTCCATTCG
AAGTCAATCGCCAACGGAAATCAAAATCCTGACACCATATCACAACACAC
CTCCACCTCCTCTCATCATTTACTCAAACAAAGCCACCAACTCTTGCCAA
GAATCAAGTGAAGATACCGGAAGTCACACATCTGAAGATACTGACTCTCT
CGTTCCGTCCCCTCTCGGCTGCAACGATCCAACATTCATCAATTATCACC
AACAACAGCTGAAATCACCAACAGAACCGTCTGCATTTAAACCGTATCCT
CATTATTATCCAAGTATGGTCCAAAGTTTAGCAAACAGATGCATAACACC
TTGGccaaatcatcatcatcatcatccaaGTTATGAAGAAGCGAAAAAGC
ATCAATGTGAATATTGCCTTAAATGGTTCCAAAGATCAAGTAGTTTATCA
AATCACCGATTAATCCATAAGAACTCCAAATCATACAAATGCAACCAATG
CAATATGAGTTTTCTTCGTAAGTCTGACCTCGGTAAACACATGGTCACAC
ACTCTGGATCAAAACCGTACCAATGTAACGTTTGTGGTAAACGCTTTTCA
CAATCTTCGAATATGCTGACTCATCAAAGACGTCATACCGGAATCCGTCC
GTATTCTTGTGGTGTATGCGGGAAGGCTTTTTACCGGAAAGTTGATGTCC
GAAGACATGCTTCGGTTCATAGAAATTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006137-exon-sc0000063-1491911889:459919..460172 | TCONS_00006137-exon-sc0000063-1491911889:459919..460172 | Clytia hemisphaerica | exon |
| TCONS_00006137-exon-sc0000063-1510915933:459919..460172 | TCONS_00006137-exon-sc0000063-1510915933:459919..460172 | Clytia hemisphaerica | exon |
| TCONS_00006137-exon-sc0000063-1575043694:459919..460172 | TCONS_00006137-exon-sc0000063-1575043694:459919..460172 | Clytia hemisphaerica | exon |
| TCONS_00006137-exon-sc0000063-1491911889:463844..464872 | TCONS_00006137-exon-sc0000063-1491911889:463844..464872 | Clytia hemisphaerica | exon |
| TCONS_00006137-exon-sc0000063-1510915933:463844..464872 | TCONS_00006137-exon-sc0000063-1510915933:463844..464872 | Clytia hemisphaerica | exon |
| TCONS_00006137-exon-sc0000063-1575043694:463844..464872 | TCONS_00006137-exon-sc0000063-1575043694:463844..464872 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000063 | supercontig | sc0000063:459919..464872 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00006137 vs. Swiss-Prot (Human)
Match: GFI1 (Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 2.689e-33 Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = 2
Query: 602 HHPSYEEAKKHQCEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRH 940
H + + + C+ C K F+RSS+LS H LIH +++ Y C C F +KSD+ KH H+G KP++C VCGK FSQSSN++TH R+HTG +P+ C +CGK F RKVD+RRH
Sbjct: 302 HKAVHSQERSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 414
The following BLAST results are available for this feature:
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