TCONS_00006137-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006137-protein
Unique NameTCONS_00006137-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006137-protein ID=TCONS_00006137-protein|Name=TCONS_00006137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MMPRSFLIKRIEKVQTGFFPWQDEMLVQSCCLEYRMGSEDLDCDEQKDKD
IEVVSEDGIEESSSEKDSIRSQSPTEIKILTPYHNTPPPPLIIYSNKATN
SCQESSEDTGSHTSEDTDSLVPSPLGCNDPTFINYHQQQLKSPTEPSAFK
PYPHYYPSMVQSLANRCITPWPNHHHHHPSYEEAKKHQCEYCLKWFQRSS
SLSNHRLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGK
RFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRHASVHRNY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003503XLOC_003503Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006137TCONS_00006137Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 215..237
e-value: 0.0014
score: 27.9
coord: 187..209
e-value: 0.17
score: 21.0
coord: 243..265
e-value: 1.9E-4
score: 30.7
coord: 271..293
e-value: 0.02
score: 24.1
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 189..209
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 245..265
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 217..237
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 273..293
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 215..242
score: 14.877
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 243..270
score: 16.186
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 271..296
score: 11.718
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 187..214
score: 11.344
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 185..237
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 223..280
NoneNo IPR availableGENE3D3.30.160.60coord: 200..225
e-value: 1.0E-13
score: 50.9
NoneNo IPR availableGENE3D3.30.160.60coord: 277..296
e-value: 1.8E-7
score: 30.4
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 271..293
e-value: 3.9E-4
score: 20.6
coord: 243..265
e-value: 2.8E-6
score: 27.4
NoneNo IPR availableGENE3D3.30.160.60coord: 250..263
e-value: 9.1E-15
score: 54.0
NoneNo IPR availableGENE3D2.20.28.30coord: 226..249
e-value: 1.5E-16
score: 59.8
NoneNo IPR availablePFAMPF13894zf-C2H2_4coord: 215..237
e-value: 4.9E-4
score: 20.6
NoneNo IPR availableGENE3D2.20.25.10coord: 264..276
e-value: 6.2E-4
score: 19.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..123
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 93..199
e-value: 8.4E-7
score: 28.7

Blast
[Close]
BLAST of TCONS_00006137-protein vs. Swiss-Prot (Human)
Match: GFI1B (Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1B PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.505e-35
Identity = 57/115 (49.57%), Postives = 78/115 (67.83%), Query Frame = 0 
Query:  181 YEEAKKHQCEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRHASVHRN 295
            + + +  +C  C K F+RSS+LS H LIH +++ Y C  C   F +KSD+ KH   H+G KP++C VCGK FSQSSN++TH R+HTG +P+SC +C K F RKVD+RRH     N
Sbjct:  214 HSQERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQHN 328
The following BLAST results are available for this feature:
BLAST of TCONS_00006137-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFI1B4.505e-3549.57Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1... [more]
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