TCONS_00006107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006107
Unique NameTCONS_00006107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006107 ID=TCONS_00006107|Name=TCONS_00006107|organism=Clytia hemisphaerica|type=transcript|length=502bp
ACTTGCCCTTTCAGCCCTGGAACCTGTCCCAAACATAATTTTTGGTGGGG
ATTTTAACCTTCCAAAGTCAACATGGCCAGACGGACTACCCAAACCTGGA
TGCTCCCTGGAAGAAAGGTCAATGTTAAATGACCTGAATCAACTTTGTAA
CGAGATGCTTATGTCCCAGTATGTTTACCGCCCTACACCTAAAGATGGGA
ACATTCTCGACCTTGTTTTcacaaacaatgaaaatcttATTCATGACTAC
ACAGTTATACCAGTATTACAGAGTACATCACATCATAGTATTGTTATGGT
CTCAACCAACCTTAATGTTCAGCATTTTCCACAAAATGATGATGACAAAC
CAGAACCTCATTCAAAATTCAACGCATTGAATTTGTTCTCAGAtgaaatt
gaatggaaaaagctgaaaaatgaccTGAATCAAATTAACTGGAATGACAA
ACTAAGCAGTGATGATCCACAAGAAATCCTAGAGATATTCAACCAAATTT
GC
Run BLAST on NCBI

protein sequence of TCONS_00006107-protein

>TCONS_00006107-protein ID=TCONS_00006107-protein|Name=TCONS_00006107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
LALSALEPVPNIIFGGDFNLPKSTWPDGLPKPGCSLEERSMLNDLNQLCN
EMLMSQYVYRPTPKDGNILDLVFTNNENLIHDYTVIPVLQSTSHHSIVMV
STNLNVQHFPQNDDDKPEPHSKFNALNLFSDEIEWKKLKNDLNQINWNDK
LSSDDPQEILEIFNQIC
Run BLAST on NCBI

transcript from alignment at sc0000062:501430..501931

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006107 ID=TCONS_00006107|Name=TCONS_00006107|organism=Clytia hemisphaerica|type=transcript|length=502bp|location=Sequence derived from alignment at sc0000062:501430..501931 (Clytia hemisphaerica)
GCAAATTTGGTTGAATATCTCTAGGATTTCTTGTGGATCATCACTGCTTA
GTTTGTCATTCCAGTTAATTTGATTCAggtcatttttcagctttttccat
tcaatttcaTCTGAGAACAAATTCAATGCGTTGAATTTTGAATGAGGTTC
TGGTTTGTCATCATCATTTTGTGGAAAATGCTGAACATTAAGGTTGGTTG
AGACCATAACAATACTATGATGTGATGTACTCTGTAATACTGGTATAACT
GTGTAGTCATGAATaagattttcattgtttgtgAAAACAAGGTCGAGAAT
GTTCCCATCTTTAGGTGTAGGGCGGTAAACATACTGGGACATAAGCATCT
CGTTACAAAGTTGATTCAGGTCATTTAACATTGACCTTTCTTCCAGGGAG
CATCCAGGTTTGGGTAGTCCGTCTGGCCATGTTGACTTTGGAAGGTTAAA
ATCCCCACCAAAAATTATGTTTGGGACAGGTTCCAGGGCTGAAAGGGCAA
GT

Coding sequence (CDS) from alignment at sc0000062:501430..501931

>TCONS_00006107 ID=TCONS_00006107|Name=TCONS_00006107|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0000062:501430..501931 (Clytia hemisphaerica)
GCAAATTTGGTTGAATATCTCTAGGATTTCTTGTGGATCATCACTGCTTA
GTTTGTCATTCCAGTTAATTTGATTCAggtcatttttcagctttttccat
tcaatttcaTCTGAGAACAAATTCAATGCGTTGAATTTTGAATGAGGTTC
TGGTTTGTCATCATCATTTTGTGGAAAATGCTGAACATTAAGGTTGGTTG
AGACCATAACAATACTATGATGTGATGTACTCTGTAATACTGGTATAACT
GTGTAGTCATGAATaagattttcattgtttgtgAAAACAAGGTCGAGAAT
GTTCCCATCTTTAGGTGTAGGGCGGTAAACATACTGGGACATAAGCATCT
CGTTACAAAGTTGATTCAGGTCATTTAACATTGACCTTTCTTCCAGGGAG
CATCCAGGTTTGGGTAGTCCGTCTGGCCATGTTGACTTTGGAAGGTTAAA
ATCCCCACCAAAAATTATGTTTGGGACAGGTTCCAGGGCTGAAAGGGCAA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003482XLOC_003482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006107-exon-sc0000062-1491911889:501430..501931TCONS_00006107-exon-sc0000062-1491911889:501430..501931Clytia hemisphaericaexon
TCONS_00006107-exon-sc0000062-1510915933:501430..501931TCONS_00006107-exon-sc0000062-1510915933:501430..501931Clytia hemisphaericaexon
TCONS_00006107-exon-sc0000062-1575043694:501430..501931TCONS_00006107-exon-sc0000062-1575043694:501430..501931Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006107-proteinTCONS_00006107-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:501430..501931 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.45301	0.944611	1.64518	1.70905	0.163289	0.258067	0.311346	0.874436	0.204071	0.126387	0	0.322566	0.241588	0	0.0687557	0.0737855	0.181795	0	0.386146	0.404074	0	0.34262	0	0.126219	0.910021	0.232049	0.332062	0.177193	0	0.273853
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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