|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006106 ID=TCONS_00006106|Name=TCONS_00006106|organism=Clytia hemisphaerica|type=transcript|length=1859bp
GTTGGGTATAGATTTGTTACTTTTAGCCTTTGTATATATATTATGATTTG
ATGTTATTTATGTAATATGAAGATGGTATATGTACATAATATGCTTgtta
cttgtattatatattttatattatgGTATTATGTTACCCTCTACAATGGA
GATCTCATGTTTGCATGTTGAAGAGTCTTGATCTCCATTGTCCCCAGTGC
ACTCCTCCTTTGTGTCCTTGCTGGAAGAATGGGCCTTAGTGAGCTCTCCT
CCCTGTCATGTGGTTTTATAAGAGCCTGTAAAATATAATATGGAAGTAGG
ATTTATTCAGACAGATGTCTTTTATGTTCAATATATTCAGTTTTTAAAGA
TAACATCATTGGTCTCCACCATATTTAAGATCAAAACAGCCACCCAACAT
tggtagcagagggttgttatGGTGATAATATGGCAGGCTTACTCGATCAT
CGGCTTCAAATATTTACCACCAAACTACATAATGTACTATTTATGGAGAT
CATCATAACTAACAGAGTTAACAACAACATCAACCGTCAGTCAAGAGACA
ACGTCAAATGGCCTGCCAGATTGGAAACGGAGTGCAGTGGGTTGGTCACG
AGACAACGCCACAAGAATGACTGCCGACAAGAGAATCTGGAGCGGATTGA
GTTTGGTCAAAGAAGCTGCACTGgttgattgttttgttttgttttgtggg
ttgaAATTCTTCAAATTGGAATGACTGAATACAGACTCACTCTTCTATGG
GTCAAAAGGGAAAAAAGTTAAATCAATGCATGATCTGGAGTTTATCAAAA
GATGGGAACCCAACTTATTGTGTCAGTTTATTATTGATGTAGGAAGTACG
GTACtcctttaaatttaattttggactttttatttgtttactGGACAACA
AATATTTCAAATCGGAAAATGACAGAAGTATAAAAATATTccttgagaaa
attttttccaggcAGATTAATTCACCACTTTAATTGAGTGGGAGGAGGGA
GAGATGATATGTGTGAATTGAACCCCCCTCTTTCCAAACCCTGAAATTAT
AGGACAGTTAAATGGAACGAAATTCAAGTGTAAGCAAATGGCTGAAAGGC
AGGATCCCATAGATCTCCTGTTTACTTCCAATCTTGCCAATATGGCCTGG
GGAGATTTGGTTTCGTAAAATTTGATGATTTGGACGAGAAATGAAAGTAT
GTGTTAAGTGAACTATGTGATGTAGGCATATCGCTGAAAGAGAGGTGAAC
CGCCCGTACAACGGTTGTAAATTCCTGTTTACTCCCGATCTTGCTTGTTT
TGCTTGGGGAGATCCTTGGTTGTTCTAACattatgttttcttttcttcat
gTACACATTCCTTGGTGGTTGAAAGTATGCAACACAGGTGGAGGAATAAA
TGACAGTTTCATGGTAGAAAATGTTTGGTTTCAAAGACAATTAGGCGGTA
TATATCATCATGCCGGATATGATATAAAAGTGAAGTTGGAATATTACAAA
TTATGTATAAGGATTGATTTTAGTGATTGGATATTATGTTGTCACCTTTT
TAAAAGTTGGGGTGAGTGTTGGGTATAGATTTGTTACTTTTAGCCTTTGT
ATATATATTATGATTTGATGTTATTTATGTAATATGAAGATGGTATATGT
ACATAATATGCTTgttacttgtattatatattttatattatgGTATTATG
TTACCCTCTACAATGGAGATCTTATGTTTGCATGTTGAAGAGTCTTGATC
TCCATTGTCCCCAGTGCACTCCTCCTTTGTGTCCTTGCTGGAAGAATGGG
CCTTATTGAGCTCTCCTCCCTGTCATGTGGTTTTATAAGAGCCTGTTCTC
TCCAGCAAG Run BLAST on NCBI transcript from alignment at sc0000062:488962..490820 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006106 ID=TCONS_00006106|Name=TCONS_00006106|organism=Clytia hemisphaerica|type=transcript|length=1859bp|location=Sequence derived from alignment at sc0000062:488962..490820 (Clytia hemisphaerica)
CTTGCTGGAGAGAACAGGCTCTTATAAAACCACATGACAGGGAGGAGAGC
TCAATAAGGCCCATTCTTCCAGCAAGGACACAAAGGAGGAGTGCACTGGG
GACAATGGAGATCAAGACTCTTCAACATGCAAACATAAGATCTCCATTGT
AGAGGGTAACATAATACcataatataaaatatataatacaagtaacAAGC
ATATTATGTACATATACCATCTTCATATTACATAAATAACATCAAATCAT
AATATATATACAAAGGCTAAAAGTAACAAATCTATACCCAACACTCACCC
CAACTTTTAAAAAGGTGACAACATAATATCCAATCACTAAAATCAATCCT
TATACATAATTTGTAATATTCCAACTTCACTTTTATATCATATCCGGCAT
GATGATATATACCGCCTAATTGTCTTTGAAACCAAACATTTTCTACCATG
AAACTGTCATTTATTCCTCCACCTGTGTTGCATACTTTCAACCACCAAGG
AATGTGTAcatgaagaaaagaaaacataatGTTAGAACAACCAAGGATCT
CCCCAAGCAAAACAAGCAAGATCGGGAGTAAACAGGAATTTACAACCGTT
GTACGGGCGGTTCACCTCTCTTTCAGCGATATGCCTACATCACATAGTTC
ACTTAACACATACTTTCATTTCTCGTCCAAATCATCAAATTTTACGAAAC
CAAATCTCCCCAGGCCATATTGGCAAGATTGGAAGTAAACAGGAGATCTA
TGGGATCCTGCCTTTCAGCCATTTGCTTACACTTGAATTTCGTTCCATTT
AACTGTCCTATAATTTCAGGGTTTGGAAAGAGGGGGGTTCAATTCACACA
TATCATCTCTCCCTCCTCCCACTCAATTAAAGTGGTGAATTAATCTgcct
ggaaaaaattttctcaaggAATATTTTTATACTTCTGTCATTTTCCGATT
TGAAATATTTGTTGTCCagtaaacaaataaaaagtccaaaattaaattta
aaggaGTACCGTACTTCCTACATCAATAATAAACTGACACAATAAGTTGG
GTTCCCATCTTTTGATAAACTCCAGATCATGCATTGATTTAACTTTTTTC
CCTTTTGACCCATAGAAGAGTGAGTCTGTATTCAGTCATTCCAATTTGAA
GAATTtcaacccacaaaacaaaacaaaacaatcaacCAGTGCAGCTTCTT
TGACCAAACTCAATCCGCTCCAGATTCTCTTGTCGGCAGTCATTCTTGTG
GCGTTGTCTCGTGACCAACCCACTGCACTCCGTTTCCAATCTGGCAGGCC
ATTTGACGTTGTCTCTTGACTGACGGTTGATGTTGTTGTTAACTCTGTTA
GTTATGATGATCTCCATAAATAGTACATTATGTAGTTTGGTGGTAAATAT
TTGAAGCCGATGATCGAGTAAGCCTGCCATATTATCACCataacaaccct
ctgctaccaATGTTGGGTGGCTGTTTTGATCTTAAATATGGTGGAGACCA
ATGATGTTATCTTTAAAAACTGAATATATTGAACATAAAAGACATCTGTC
TGAATAAATCCTACTTCCATATTATATTTTACAGGCTCTTATAAAACCAC
ATGACAGGGAGGAGAGCTCACTAAGGCCCATTCTTCCAGCAAGGACACAA
AGGAGGAGTGCACTGGGGACAATGGAGATCAAGACTCTTCAACATGCAAA
CATGAGATCTCCATTGTAGAGGGTAACATAATACcataatataaaatata
taatacaagtaacAAGCATATTATGTACATATACCATCTTCATATTACAT
AAATAACATCAAATCATAATATATATACAAAGGCTAAAAGTAACAAATCT
ATACCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006106-exon-sc0000062-1491911889:488962..490820 | TCONS_00006106-exon-sc0000062-1491911889:488962..490820 | Clytia hemisphaerica | exon |
| TCONS_00006106-exon-sc0000062-1510915933:488962..490820 | TCONS_00006106-exon-sc0000062-1510915933:488962..490820 | Clytia hemisphaerica | exon |
| TCONS_00006106-exon-sc0000062-1575043694:488962..490820 | TCONS_00006106-exon-sc0000062-1575043694:488962..490820 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:488962..490820 . |
Blast
The following BLAST results are available for this feature:
|
