TCONS_00006105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006105
Unique NameTCONS_00006105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006105 ID=TCONS_00006105|Name=TCONS_00006105|organism=Clytia hemisphaerica|type=transcript|length=380bp
TGCCAGCCTCGTTCAAAATGACTGCAGGGAGTACGAAAAACGAAGGTAAA
ATTGCAACAATTTTACAATATTTCACGAAAGTTTCTCGTTTGTTATTAGT
TACCATGGTAACTGAGGAATGGAATGTTTTGGCGAGATCCAAACAAATAG
TGGTGACCCACATCTGTGAAACCAAATAAAAGTAATGCATCGATATTCCA
AGATACTTGCAACTGGTAACACTGCCAGGTCTTCTGGAAATTGCCAATAT
ATCAGTGATGAGGAGAGAGATGAACATTGCCAAGGCGTTCAAACCGGGTA
GATTTTGAAGTTCCTTGAATCTCGAATATATGGCGATCAGAAGAAGATAT
ACAGTAATACTAAGACTTGTACCGATCAAT
Run BLAST on NCBI

protein sequence of TCONS_00006105-protein

>TCONS_00006105-protein ID=TCONS_00006105-protein|Name=TCONS_00006105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
LIGTSLSITVYLLLIAIYSRFKELQNLPGLNALAMFISLLITDILAISRR
PGSVTSCKYLGISMHYFYLVSQMWVTTICLDLAKTFHSSVTMVTNNKRET
FVKYCKIVAILPSFFVLPAVILNEAG
Run BLAST on NCBI

transcript from alignment at sc0000062:429090..429469

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006105 ID=TCONS_00006105|Name=TCONS_00006105|organism=Clytia hemisphaerica|type=transcript|length=380bp|location=Sequence derived from alignment at sc0000062:429090..429469 (Clytia hemisphaerica)
ATTGATCGGTACAAGTCTTAGTATTACTGTATATCTTCTTCTGATCGCCA
TATATTCGAGATTCAAGGAACTTCAAAATCTACCCGGTTTGAACGCCTTG
GCAATGTTCATCTCTCTCCTCATCACTGATATATTGGCAATTTCCAGAAG
ACCTGGCAGTGTTACCAGTTGCAAGTATCTTGGAATATCGATGCATTACT
TTTATTTGGTTTCACAGATGTGGGTCACCACTATTTGTTTGGATCTCGCC
AAAACATTCCATTCCTCAGTTACCATGGTAACTAATAACAAACGAGAAAC
TTTCGTGAAATATTGTAAAATTGTTGCAATTTTACCTTCGTTTTTCGTAC
TCCCTGCAGTCATTTTGAACGAGGCTGGCA

Coding sequence (CDS) from alignment at sc0000062:429090..429469

>TCONS_00006105 ID=TCONS_00006105|Name=TCONS_00006105|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000062:429090..429469 (Clytia hemisphaerica)
TTGATCGGTACAAGTCTTAGTATTACTGTATATCTTCTTCTGATCGCCAT
ATATTCGAGATTCAAGGAACTTCAAAATCTACCCGGTTTGAACGCCTTGG
CAATGTTCATCTCTCTCCTCATCACTGATATATTGGCAATTTCCAGAAGA
CCTGGCAGTGTTACCAGTTGCAAGTATCTTGGAATATCGATGCATTACTT
TTATTTGGTTTCACAGATGTGGGTCACCACTATTTGTTTGGATCTCGCCA
AAACATTCCATTCCTCAGTTACCATGGTAACTAATAACAAACGAGAAACT
TTCGTGAAATATTGTAAAATTGTTGCAATTTTACCTTCGTTTTTCGTACT
CCCTGCAGTCATTTTGAACGAGGCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003480XLOC_003480Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006105-proteinTCONS_00006105-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006105-exon-sc0000062-1491911889:429090..429469TCONS_00006105-exon-sc0000062-1491911889:429090..429469Clytia hemisphaericaexon
TCONS_00006105-exon-sc0000062-1510915933:429090..429469TCONS_00006105-exon-sc0000062-1510915933:429090..429469Clytia hemisphaericaexon
TCONS_00006105-exon-sc0000062-1575043694:429090..429469TCONS_00006105-exon-sc0000062-1575043694:429090..429469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:429090..429469 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.210197	0.276351	0.275966	0.143297	0.11781	0.632139	0.155749	0.319275	4.1904	2.30787	0.401192	0.880593	0.237884	0.432541	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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