TCONS_00006071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006071
Unique NameTCONS_00006071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006071 ID=TCONS_00006071|Name=TCONS_00006071|organism=Clytia hemisphaerica|type=transcript|length=1540bp
CTCCACTAACCGTCGACTCTGCTGAAAATATACCTCAAACACCGGAAATG
AATGTGGAACTACCCGATACTGCGGATACACCGGACTCCAGAACAAACAT
TCCGCAAAGTCACGGCAAGACAATCGCCAATAAACGAAAACATATCCaCC
ACAAACCAGAAGCCACCAAAAATGCAGAAGCAGCGAAAAAACAAGATATG
TCATTCAATGATGAGATGCCAGGACAAGAAATGAACGAGGGACCAGTTGG
TAAAGTCCAAAATGCTGCTGGCGTCGAAGGTTTGGGCGGTGAGATGAATG
GTATCCCAACCGGTATGGGCGCAGGGGCGGAACCATTGGGCgcatttgaa
aatgaagacacACCACCTGGAACAGAAACACAACCTCAAAGTTTGGGCGA
AGACCAACCCAATGGACTTTCGGAATCAAACCTTGGTGAACAAGGAGGAG
CTGGAGAAATGACGAACGAagcttcagtgaaaatgaaagcacCCGCAATT
TCTATGTCTCACTCATTAGACGATCTCGATAATTCAGTCAATATCCAAGG
CGATGGAGAAATCGGAAAATATGTTCGTAACTCCCGACAAGGAGGTATGG
GAACAGGTAGCGAGAGTATGATTGGTTTGGAAGCGAAAGACCCTCCTTTC
ACAGGACATGGCCCTGAGGATGAGGAAGACGAGACTCCATCAAGAAGACA
TCTAGTTAAACAAAAGCCCAAACGCAAGAAGAATTCCtggaaaaaacctt
ttaaacAATTACAAAAGAAACAACAATAAGACACGTTTTACACCAAGGGT
TTTTATAACCTCAACAGTAAACTTATATTCAATTTTAGCTGACTAATTTC
GCTTGTATAATGCAATAGatctttaactttttgttaattttttgtctgaA
AGATAACACATTTCTTCCTATGGAGGAACTATTACACACCGTAAATTTAT
ATAATGTCGAAAACTCCTACCAGTTCCGTCACTCTTCCTTGGACTTGGAG
AGTTTATTTTTTGATTCTGCTTCACACATTATCTTCATTCCTTCTCAAAG
TGATACTTCGGCAAGTTGAAATGTTAGAAGCTGTGTTTCGATCTTTTGTT
CCACCTTTAAAAAGCCTCCAGACTTTCTTGTTGCATAGATACAAAATGCA
AACGAAAATTCCCTTTAAGCTTCTCACCAAGACAAacagaaatgaaaaaa
tcaaattcactgTCATCAATTCTTTACCTGGTATTTGTACATAGCCAATG
ATATCAATCAAACCCAACCCAATAATCAACTTTAAAGCAATTCTCACTAA
GTCAGCATTGGCTTGATCGGACTGtaaagtttttcttgtttttttcttaG
CCAAGTGTATTTTGAGCAGAGTTTTGGCTAAGGCCAGAATGGATATCAAA
TGCATGACAACCATTGGAGTGATAACAGACCACACCCTTGTGGGGGTATG
TGTGACCCAGCACATTTTATCATAACCAACGTTGACATTGCCAGCCTCGT
TCAAAATGACTGCAGGGAGTACGAAAAACAAAGGTAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000062:430112..436266-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006071 ID=TCONS_00006071|Name=TCONS_00006071|organism=Clytia hemisphaerica|type=transcript|length=6155bp|location=Sequence derived from alignment at sc0000062:430112..436266- (Clytia hemisphaerica)
CTCCACTAACCGTCGACTCTGCTGAAAATATACCTCAAACACCGGAAATG AATGTGGAACTACCCGATACTGCGGATACACCGGACTCCAGAACAAACAT TCCGCAAAGTAAGATTCAGACTTTATTCCTGAAACAGAAAAATGTGAACA ATAGACTGCAAACACATGTAACTGAGAACAATAATAAACGAACAGAAATC TTCAAAAGAATGCGAACACCCGATACCGTAGATACACCGACCATGGACGT TGATACCCCGAACACACCGGACACTCCCGAATTCGACGTAAATGTAAACT CGACAAAGAATACTCCAGACAGTACCGGATTTCAATTTTCCGGTGATGAT GACCCAAGTTATACGGAAGTTGATAACGGAAAATTAAGACCAATCCATTT TATAGCGAACCCGTTTTCTAACGTAACTGAAACGACAGGAGCGGTTTCCG TGCGCTGGAAACCGTACAATAAGAACACGTCGCGTATCACTATTCATGGT GCACGGATGCACGATGAAATTGAAGCCAAAACACAAGAAGAAGATGCCGA GAATAAAAATATGATAGGAGAAGAAACTCAAATCTCCCTTGATAAAGAAA ATGCTAAACTTTTCAAAAACTCTACTTTTGATAATACAATGTTGGATTAT TTTTTCAACCAATATAACAAAAAGTCCTTTTTACCTAAGCTTCTCTCAAA GAACAAATCTACTACTTCTAAATCTACGCTATTTTTGAATATGAAGTTTT AATATTTCTAACAAAATATCAATATATCTTTTTGGTAAGCTTTTTAAATT TTTAAATTTTATCGGACATAAGCTCTCTGCTACGTCGACCAGTTATAGAT ACTTCGGCCTTGATTTACTACAGTATTAACAAGTTTACGTAACATCTTTA CTTTAACATTGATTTAATATTTAGGAGTTCACGTAACACATACAAAGATA CGTTAAAATACCTTAAAATGCGCGTTATTCAAATCTTTAAAATCATTTTG ATCCCATTATTAATTAGACTAGCAAACTAGTCTGTTAATTAATCATGTCA GAGGGTGGGAACATAAAGGCGGCGGGCGTTTGCTAGAATAGGAGCTGCGT AGGAGAGCGAACAAAAGTTGGTGAGAGGCTGCTGATTAAGCTTTCAGCCC TTGCCGCCGACAAAATTTCTTCTTACGCTTACCTAACTCCTACGCTCACT TTTCCCACGTGATACCGTTCCAGCCCGACTGGCGTGCCAGTCTAATTATT AATATGCTGGTCCACTCTCTTTTTTCAGGTCACGGCAAGACAATCGCCAA TAAACGAAAACATATCCGTAAGTTAGTACCCATTCCCAATTTTTCACCAT TTGAAAACATTTTGGTATTTCACAACCATTCAGGATATCAATTTTTCTGA TTCTTTAAAAAAATAAAAGTAAATTTTCCCACTATTTCACTTTATCTTGA GTTATAAAGCAAAAAAGTTTTGTTTTTTACCAAAGCTGAGGCTACAGGCT GGTGTTTTTAGGCGATTTGAACTGATTTTTTTGAAGCCACTTTTGTAATT TTTTAAGCGACATTTTTCTAGCGTTATAGTGTACTTACTGATAGCAGAAA AATTTGACGTGCTACATTTTACAATTTTTCATGCGTTTTTACAACGCAAT GTGAATGGCATTGCAGCCTGTAAAATCGTATAAGTGTAGTCTTATTCTTA TAGTATCCTTATCATTTTATTTTGTAGACCACAAACCAGAAGCCACCAAA AATGCAGAAGCAGCGAAAAAACAAGGTACACTAAATTCTTATGTTGTTAA TGTTAATATACTCAACCTCTTTATAATGAATTGCTTTAAGATTTATATCT GTTGGTGCTTTTAAGACTTATCTGTTCTTCATCTGTTGGGAGTATTTTTT AATTTCAAGAAATATTCGATTCCCAACTATCTTTCCTTTGTATCCATGAA TTTCTATTACTGTAAGCTTCCCTATTCTTAACAGTCAAGATTACGTCATT CACAAACAGGATGAACTGTTTTAGGGAACATAAGCTTCCATCCAAATTCT TTCCAAACACTGTTTCAAATAGGATAAATGTCTTGTGACTTATGTATATC ATGATATAATTTTTCTTGTGGTAATGATTATCTGTTTATTACTTTCTCTA GATATGTCATTCAATGATGAGATGCCAGGACAAGAAATGAACGAGGGACC AGTTGGTGAGTTAGTGAAGATTATATATAACAATGATGCTGGCTCGTTTT GGACCTTCTATTACATTACTACACTCATTGAGTTTAAAGGGGTAGAAAGT CTTTCACAAGCGAGAAAAAGTGAAGTCTTAAGATCAACGCTGCATTTAGA ATGAGGGATTGAATCTAGTGCTTTTTTGTTTTCATTCAAGCACGCATTTT TTGAAATTTGGCGATAAATCCGGCATTTCTGTCATCCAAGAGTTTCGCAT CCATTGCGGCTTAAAACTCAATTACGCCTGAGAATGTTTTATTAAGGTTG ACATGTTTTGGACATGTTTTTCCATTCTTAATTTAAGTTATCATATAGAT TTTTGATTAATTACTTTCTAGGTAAAGTCCAAAATGCTGCTGGCGTCGAA GGTTTGGGCGGTGAGATGAATGGTATCCCAACCGGTATGGGCGCAGGGGC GGAACCATTGGGCGCATTTGAAAATGAAGACACACCACCTGGAACAGAAA CACAACCTCAAAGTTTGGGCGAAGACCAACGTACGTTATTTTATTTAACC TTGATAAGATATACTTTCTAACTCTATGGCATGGGGAACAGGGGGGTCGA TAGTAAAATCTCAGACATAATGACGTTTACTACGGTGGTGGTGTGACGAG AAATAGAAAAAAACTTTTACTACCCAGGGTAGTTAAATACTAAAATGGGT GGTATCTATGGGTTAAATGTTGAAAAAATTTACTACCTGGGTAGTTAAAA CTGGTAAAATTAGCAAATTTTAGCTATTTTTGTAATTCTTTTAATTTTTT GGATGGCTTTACTGAAAAAATCTTCTGTTGGAAAGTTGTTTGCTGCAAAC CAAAAATTCTCGAAATTTTTTGTCAATATAAAAAAGACTTTAATTCTATG GGCAAAACATTAATTTTTGCATTAAGTGAAAAATGTGTCACAGAATCATT TTTTAGCTTTTTTTGTAAAATCAAGCCGAAAAGCAACCGAAAAATAGGTG GTCTCCATGACAAATTGTCCCGAAAACTTTTACTACCAGGGTAGTAAAAT ACCTCTTCCAAGAGTCTGGGTGGTGGTATGTAAAAATTCATAAAAATCCT TTTACTACTCATATATGTCTGAGATTTTACTATCGACCACCCCCCCTGTG AGGGATATTATTGAAATTGAAAAGTCAAAACAAAGAAAAGCCAAGGTAGA GTTTAAAATTTATAACAGAGTGTGTTTCTTTGAGCCATAACCTTATAAGG AAATGAATTTTTGCCCCCCCCCCCCTACGCCTCTTAAGATCCACCATTTC AATAATTCACGGTAAAGAGATGAAATAAAAATAGATTTTCACCTTCAATT CGCCCGATAGTCACTATAGTCATTTGTAGAATTATCCTTATTGTGAATCA CACTCTCATTTTATATTCAGCCAATGGACTTTCGGAATCAAACCTTGGTG AACAAGGAGGAGCTGGAGAAATGACGAACGAAGCTTCAGTGAAAATGAAA GCACCCGCAATTTCTATGTCTCACTCATTAGACGATCTCGATAATTCAGT CAATATCCAAGGCGATGGAGAAATCGGTGAGTACTTGCTGCCATTGACTT TTGATCTGTACAAACCAACATACCCTCTTATTGGGATGATGAAATGATCA AGGGAAAAGCTTTATAAGATTACAAGCAAGTGGAATAATTTTCTGTTTTG AACACTATAAATTTAAACAATGTTCACTAGTTTCCAAACTTGTTAAGACC TAGGTAATCTTGATATCCAGGCTGTATACTTTTTTTTACTTTTTTTAATG TTTCTAGTTTACCGCCTCGTCTTCCTTAAAGCAAGCTATATTCCAATCAG AAGGTTATGCATAAATTAAAAATCAGCCTACACTGTGTTCGCCAGCATCT AGGAAACATTTAAGTAAGAAAATAAACTACAGCTTTGATAACCAGGCTAG GATCTCAGGAATAAAATCTATTTACTCTGAATATACGAATTAATATTTCC TTTCTTTCCCTTTAGGAAAATATGTTCGTAACTCCCGACAAGGAGGTATG GGAACAGGTAGCGAGAGTATGATTGGTTTGGAAGCGAAAGACCCTCCTTT CACAGGACATGGCCCTGAGGATGGTGAGTAAGTAACCTCTCTTTGTTTTT GTTTATCATAGTTTGGTAAATCAATTTTGAACGTCAACATCGATGGCAAA ATTGCTTAAATTCCTTATTTTGTCCACATGACACCGAAATACCGTCATTT TTTCTTCAAACGCCGAACCGCCGACAGAAGAAAGGGCCAATACCGTCACA TCGTAAAACCTGTACAAAGTCAATGTCCCCTTCATAAGCTCTTTTTATAC CCTTTTGATAAACCCGCTGGCAGCTAAATTAAGCAACTAGAAGTTCGAAT TTAATATTTTTGCAGATGCTGAGCCTGACCTTTCATGTCAAAAAAGTCTC GAAAACACTGAAAACACTTTGTCCGAAACACTTTTTCTGAACCTTTCATG CTTTTTTGGGGTGTTGTTGGCAAAAATCATTTCCCAGAAACACCTTACCT CTCGAGGTGGTGTGTTTTCAGCATTTCCTGTGTTCCTGGGATTTTCATAA ATCAACTCTCAATTTTCTCCATAAAATCCAAGCCAAANTCTCGAGGTGGT GTGTTTTCAGCATTTCCTGTGTTCCTGGGATTTTCCTAAATCAACTCTCA ATTTTCTCTATAAAATCCAAGCCAAAATGCATTACCTGAAACACCGGCAA GTTTCTGAACCATTCAGTGTTTCTCTGGTGTTCAAGGTGTTTTTCAAGAC GATTTTGAAGCTCTTGCCGTGTCCTTTCGGGACCAATCAGATAAAAATCG GGTTTAAAATCGGGTTAGAAATCGGGAAAAAATCGGGGAAAATAGCCAGT TGGGACTTTTTTTAACAGTCGGCTTCAACAGGACATTCGGTGTTTCTAAA AACTTTTAAGACTGAACCATTCGTGTTCAAAAGTGTTTTCTGCAAACCGG GTAAGCAGTGTTTTTTTAAAGACATGAAAGGTTCAGGCTCGCTATAATAT AATATTTTCTAAATTTCTTTCAATATTTCCTTCTCAGAGGAAGACGAGAC TCCATCAAGAAGACATCTAGTTAAACAAAAGCCCAAACGCAAGAAGAATT CCTGGAAAAAACCTTTTAAACAATTACAAAAGAAACAACAATAAGACACG TTTTACACCAAGGGTTTTTATAACCTCAACAGTAAACTTATATTCAATTT TAGCTGACTAATTTCGCTTGTATAATGCAATAGATCTTTAACTTTTTGTT AATTTTTTGTCTGAAAGATAACACATTTCTTCCTATGGAGGAACTATTAC ACACCGTAAATTTATATAATGTCGAAAACTCCTACCAGTTCCGTCACTCT TCCTTGGACTTGGAGAGTTTATTTTTTGATTCTGCTTCACACATTATCTT CATTCCTTCTCAAAGTGATACTTCGGCAAGTTGAAATGTTAGAAGCTGTG TTTCGATCTTTTGTTCCACCTTTAAAAAGCCTCCAGACTTTCTTGTTGCA TAGATACAAAATGCAAACGAAAATTCCCTTTAAGCTTCTCACCAAGACAA ACAGAAATGAAAAAATCAAATTCACTGTCATCAATTCTTTACCTGGTATT TGTACATAGCCAATGATATCAATCAAACCCAACCCAATAATCAACTTTAA AGCAATTCTCACTAAGTCAGCATTGGCTTGATCGGACTGTAAAGTTTTTC TTGTTTTTTTCTTAGCCAAGTGTATTTTGAGCAGAGTTTTGGCTAAGGCC AGAATGGATATCAAATGCATGACAACCATTGGAGTGATAACAGACCACAC CCTTGTGGGGGTATGTGTGACCCAGCACATTTTATCATAACCAACGTTGA CATTGCCAGCCTCGTTCAAAATGACTGCAGGGAGTACGAAAAACAAAGGT AAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003453XLOC_003453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006071-exon-sc0000062-1575043694:436159..436266TCONS_00006071-exon-sc0000062-1575043694:436159..436266Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:434950..434988TCONS_00006071-exon-sc0000062-1575043694:434950..434988Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:434492..434539TCONS_00006071-exon-sc0000062-1575043694:434492..434539Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:434062..434115TCONS_00006071-exon-sc0000062-1575043694:434062..434115Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:433537..433695TCONS_00006071-exon-sc0000062-1575043694:433537..433695Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:432491..432646TCONS_00006071-exon-sc0000062-1575043694:432491..432646Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:431944..432051TCONS_00006071-exon-sc0000062-1575043694:431944..432051Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:430112..430979TCONS_00006071-exon-sc0000062-1575043694:430112..430979Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:436159..436266TCONS_00006071-exon-sc0000062-1510915933:436159..436266Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:434950..434988TCONS_00006071-exon-sc0000062-1510915933:434950..434988Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:434492..434539TCONS_00006071-exon-sc0000062-1510915933:434492..434539Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:434062..434115TCONS_00006071-exon-sc0000062-1510915933:434062..434115Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:433537..433695TCONS_00006071-exon-sc0000062-1510915933:433537..433695Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:432491..432646TCONS_00006071-exon-sc0000062-1510915933:432491..432646Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:431944..432051TCONS_00006071-exon-sc0000062-1510915933:431944..432051Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:430112..430979TCONS_00006071-exon-sc0000062-1510915933:430112..430979Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:436159..436266TCONS_00006071-exon-sc0000062-1491911889:436159..436266Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:434950..434988TCONS_00006071-exon-sc0000062-1491911889:434950..434988Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:434492..434539TCONS_00006071-exon-sc0000062-1491911889:434492..434539Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:434062..434115TCONS_00006071-exon-sc0000062-1491911889:434062..434115Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:433537..433695TCONS_00006071-exon-sc0000062-1491911889:433537..433695Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:432491..432646TCONS_00006071-exon-sc0000062-1491911889:432491..432646Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:431944..432051TCONS_00006071-exon-sc0000062-1491911889:431944..432051Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:430112..430979TCONS_00006071-exon-sc0000062-1491911889:430112..430979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:430112..436266 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0259928 0.12072 0.0295265 0.335568 0 0 0 2.05369 1.79168 0 0.49516 3.94485 3.14611 3.34208 5.56789 5.61694 4.59346 0.296954 0.279355 4.14875 4.5285 6.76727 4.77671 3.75474 4.72621 0 0.690908 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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