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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006062 ID=TCONS_00006062|Name=TCONS_00006062|organism=Clytia hemisphaerica|type=transcript|length=1294bp
aaacaaaggaaaatagAATTATCACAAATCTatgaaaattaataaatcat
aaatatgaaaataatacGTTTTACATGTAGAAAGTGTTCAGAAGAAATTG
AGAGGGTAAAGGTTACTTTCTCGGCTCATCGATTTATTTTTTGAGAGCAG
AGCAGAGtgtgtttaaaatattttcataaacttgGTATGCACACAATATG
ACAACTTTTGAAAATACATTTCTTACAACAGAGGAGGAATATGAACACCA
ACCAGATCACGACGATGTCGAAGTTGCTGCAGGAAAAATCACCAAATGGG
TTGAAGGAGACTTAAGATTGAAGAATGACATTAAACGGAACGAACATTTG
AGAACTTTATTGAAGAAGTATCAAGAAGAATTGAAAGCATTAATGATCCA
AGATGATAGTAAATATcggaaagaaattaaaatggaaaGAAAGTATCAAG
AAAAGAAATTGaataGATTAATGGTCCACGAGGCAAAACAAGTTGAATCC
AGAAGTTGGGATTTCGAGAAAAGTGATCCGAGGGTTGAAGATCTTGTCAA
GAAAATCAAGGAATTCAAATTGCATTTTGACAAAGACCGATCACAGGCTA
AAAAGAGGATGATTACAGGACATAAAGAAGCAAGCCGGTTGAAATTGAAA
TGCGTTCAAGAACAAAATAAACACGTGTTGAAGTATCTTGATAGAGATTG
GCAACGAAAAATTGAGGACTCTTGGAGACGAATTGAATCTCAATTGTTGT
ATATGCATGAAAAGGAAGTCAAGGAGaagaacgaaaaagaagaaaaaatt
cgtCAAAACAAATTGAACGCTAGACAAAATGAACTACAGCCTTCGTTAGA
TTTACGATTAAATGCTCGACGAGAAATTATTGACGAAAATCAGCAACTAC
TTCAAGATGTCACTGCTTTGAGAATCAAACATTCAACAGCGGCGGATTTA
CTCTACAAATTGAAATCGACTTTCGAACTATTTATTGGAGAGACTAAACA
AGCGGATGCGATTGAAGCCAATAAACTGGCAACGCAATTAATTGATTATA
AAAAGACTTCTTTTATCGAAGTTGATAATAATGACTGACCAATAGTAAAA
CAGCCAATTGCAGAACGAAACCATAGTGGGTGGAACTtgtggcttttaga
atcgcaccatCTACATACAGAGTGAAGCAAAAAGTCTGTAGAATTTGTAC
CTTTTCAGTGGATTGAattcagtttttcaaaaaataagtctttcttacaa
aaaatgctGGTTTCTCCTGGATTTCTACCCGCTGtgaatttttt Run BLAST on NCBI transcript from alignment at sc0000062:294490..298385- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006062 ID=TCONS_00006062|Name=TCONS_00006062|organism=Clytia hemisphaerica|type=transcript|length=3896bp|location=Sequence derived from alignment at sc0000062:294490..298385- (Clytia hemisphaerica)
AAACAAAGGAAAATAGAATTATCACAAATCTATGAAAATTAATAAATCAT
AAATATGAAAATAATACGTTTTACATGTAGAAAGTGTTCAGAAGAAATTG
AGAGGGTAAAGGTTACTTTCTCGGCTCATCGATTTATTTTTTGAGAGCAG
AGCAGAGTGTGTTTAAAATATTTTCATAAACTTGGTATGCACACAATATG
ACAACTTTTGAAAATACATTTCTTACAACAGAGGAGGAATATGAACACCA
ACCAGATCACGACGATGTCGAAGGTAGGATTTGTATATTTCTCTTGTATT
TGAAGTAGAAACTTATTTCCTTAGGACAATGCACGAAGAATAAATTACAT
TATACAAAAACAAAGACTTCGATAGCTAAAATATTGAGAAAAAGTTAAGA
ACATTTTAAGAACATTTTGAACGTTTTTATATAAAAAACGTGTTTGAGCC
TATCCGCAAAGTTTTCGCGAAGACTAGGGTATTTTTGCGATTTTGAGTCA
TTTATAAGCGTTAAGAATCGGTAGTATCCTTTTTTAAATAAAGCTTTGGC
AAATCATTCAAACATCCCCTTTGTTTATCTCATTTTCAAGTTGCTGCAGG
AAAAATCACCAAATGGGTTGAAGGAGACTTAAGATTGAAGAATGACATTA
AACGGAACGAACATTTGAGAACTTTATTGAAGAAGTATCAAGAAGAATTG
AAAGCATTAATGATCCAAGATGATAGTAAATATCGGAAAGAAATTAAAAT
GGAAAGAAAGTATCAAGAAAAGAAATTGGTAAGGATACATTCTGTCAAGA
GATTTTTATAGTACACGTTTTTTATTGAACAAACTTTATAAAAACAAGGC
TTCGATGGGCAAAAAATACTCACAAAATGGTGAAATTAGACCATATTAAG
AACATCCAAAGGCTTGAAAAATTTAGGATGTTCTTGTAAAAAACGTGTAT
TGTAAGAAGCTTATAGACATTTCAGAATCTTCGCAGTGCCGTGTTCTTCG
TGAACTATGATCAGAGGATGTGGAAATTGACTAAAAAGAATCGACATTCA
TTTCTTTAAAATATCAAAGTAGTTTGAAGTAGAGCTGATAGTATAATGTT
TAAAAAAGGACTTGGTTTCTTCGCATTAACCACTAGCCCTGATTGTTTTT
TAAGTCAAAAGCACACTGTTTGTCAACAACCAAATTGTGGATGCTCAGGG
GGGCGCGGTTCTACTGTGAAAGTGATAGGGCCACTGACTAAGGAGGCGTC
ATCATCGTTGGAGCCAACGGACGAAAACTTTTGAATTTTAACCCTTCTAG
ATCTTCTAAAACAGGTCTTTTTTTAAGGTTATTAAAAAGAATTTAGCTTG
ATTAGTAAATTTTCTTTTTGCTTTGAAAAAATGTGGTCGGGCCAAGGCTC
GACTGACACCCCCCTCCACCCGCTGCTGCGGCGCTTGATGCTTTTCCATT
ACTCTCTTCCAAGCAAAAGTTATTACACATTGTGAAGTTTCAGCACCATA
CGGGAGAGACAGTTTTTATGAAAATATATACAATCAATGCTTTCTAATTC
GACATTCTTCCATCCCACTCCATTAGTCGGTAATATTGAAAGTTACCGTC
AACAAGAAACTCTCATAAACGACACTTCTATCCGATACGTTCCGACCATG
CTCAGTGAAAATCCAATTCCCTTCGATAATCTCTTTAGAGAGCGTCAACT
GTAAAATTCTGGAAAGGTTTGTTTCATCGTTTTCTAATGGTTTCTTTTTT
AATTTTTCAGAATAGATTAATGGTCCACGAGGCAAAACAAGTTGAATCCA
GAAGTTGGGATTTCGAGAAAAGTGATCCGAGGGTTGAAGATCTTGTCAAG
AAAATCAAGGAATTCAAATTGCATTTTGACAAAGACCGATCACAGGCTAA
AAAGAGGATGATTACAGGACATAAAGAAGCAAGCCGGTTGAAATTGAAAT
GCGTTCAAGAACAAAATAAACACGTGTTGAAGTATCTTGATAGAGATTGG
CAACGAAAAATTGAGGTAAATTATCATGTGTTTTTCAATATAATATATTT
TCAATGCCAAGCTAATACCTAGTCCCTTCTTTTATGATATGATGCAGGTT
TGTACGATAAGTAAGGCTCGCGGTGGCGAAAATTTGAGAATTCCATTTCT
TTATTTGTCTACCGGGTTGGCATCACTTACCCGTGATCCGCCTCTTCAGT
TGCTGAGCATCAATCAGAGAGGCATCAAGTACCATTTTGGGAGATAATTT
GGCTGGGCCCACTTTACGCACCGTAGCTGGATGCTCTACCTTCATTCTAT
GACCGCTTTAATTACTTACAAAACTGCGTAAAATGTTTGCCCTCAGTTCA
TCATACGTTTGACCATTGATTGATTTGACCTTTCTAGGACTCTTGGAGAC
GAATTGAATCTCAATTGTTGTATATGCATGAAAAGGAAGTCAAGGAGAAG
AACGAAAAAGAAGAAAAAATTCGTCAAAACAAATTGAACGCTAGACAAAA
TGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAC
CGTCAACAAGAAACTCTCATAAACGACACTTCTATCCGATACGTTCCGAC
CATGCTCAGTGAAAATCCAATTCCCTTCGATAATCTCTTTAGAGAGCGTC
AACTGTAAAATTCTGGAAAGGTTTGTTTCATCGTTTTCTAATGGTTTCTT
TTTTAATTTTTCAGAATAGATTAATGGTCCACGAGGCAAAACAAGTTGAA
TCCAGAAGTTGGGATTTCGAGAAAAGTGATCCGAGGGTTGAAGATCTTGT
CAAGAAAATCAAGGAATTCAAATTGCATTTTGACAAAGACCGATCACAGG
CTAAAAAGAGGATGATTACAGGACATAAAGAAGCAAGCCGGTTGAAATTG
AAATGCGTTCAAGAACAAAATAAACACGTGTTGAAGTATCTTGATAGAGA
TTGGCAACGAAAAATTGAGGTAAATTATCATGTGTTTTTCAATATAATAT
ATTTTCAATGCCAAGCTAATACCTAGTCCCTTCTTTTATGATATGATGCA
GGTTTGTACGATATTTGAGAATTCCATTTCTTTATTTGTCTACCGGGTTG
GCATCACTTACCCGTGATCCGCCTCTTCAGTTGTTGAGCATCAATCAGAG
AGGCATCAAGTACCATTTTGGGAGATAATTTGGCTGGGCCCACTTTACGC
ACCGTAGCTGGATGCTCTACCTTCATTCTATGACCGCTTTAATTACTTAC
AAAACTGCGTAAAATGTTTGCCCTCAGTTCATCATACGTTTGACCATTGA
TTGATTTGACCTTTCTAGGACTCTTGGAGACGAATTGAATCTCAATTGTT
GTATATGCATGAAAAGGAAGTCAAGGAGAAGAACGAAAAAGAAGAAAAAA
TTCGTCAAAACAAATTGAACGCTAGACAAAATGAACTACAGCCTTCGTTA
GATTTACGATTAAATGCTCGACGAGAAATTATTGACGAAAATCAGCAACT
ACTTCAAGATGTCACTGCTTTGAGAATCAAACATTCAACAGCGGCGGATT
TACTCTACAAATTGAAATCGACTTTCGAACTATTTATTGGAGAGACTAAA
CAAGCGGATGCGATTGAAGCCAATAAACTGGCAACGCAATTAATTGATTA
TAAAAAGACTTCTTTTATCGAAGTTGATAATAATGACTGACCAATAGTAA
AACAGCCAATTGCAGAACGAAACCATAGTGGGTGGAACTTGTGGCTTTTA
GAATCGCACCATCTACATACAGAGTGAAGCAAAAAGTCTGTAGAATTTGT
ACCTTTTCAGTGGATTGAATTCAGTTTTTCAAAAAATAAGTCTTTCTTAC
AAAAAATGCTGGTTTCTCCTGGATTTCTACCCGCTGTGAATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006062-exon-sc0000062-1575043694:298113..298385 | TCONS_00006062-exon-sc0000062-1575043694:298113..298385 | Clytia hemisphaerica | exon |
| TCONS_00006062-exon-sc0000062-1575043694:297608..297795 | TCONS_00006062-exon-sc0000062-1575043694:297608..297795 | Clytia hemisphaerica | exon |
| TCONS_00006062-exon-sc0000062-1575043694:296371..296625 | TCONS_00006062-exon-sc0000062-1575043694:296371..296625 | Clytia hemisphaerica | exon |
| TCONS_00006062-exon-sc0000062-1575043694:294490..295067 | TCONS_00006062-exon-sc0000062-1575043694:294490..295067 | Clytia hemisphaerica | exon |
| TCONS_00006062-exon-sc0000062-1510915933:298113..298385 | TCONS_00006062-exon-sc0000062-1510915933:298113..298385 | Clytia hemisphaerica | exon |
| TCONS_00006062-exon-sc0000062-1510915933:297608..297795 | TCONS_00006062-exon-sc0000062-1510915933:297608..297795 | Clytia hemisphaerica | exon |
| TCONS_00006062-exon-sc0000062-1510915933:296371..296625 | TCONS_00006062-exon-sc0000062-1510915933:296371..296625 | Clytia hemisphaerica | exon |
| TCONS_00006062-exon-sc0000062-1510915933:294490..295067 | TCONS_00006062-exon-sc0000062-1510915933:294490..295067 | Clytia hemisphaerica | exon |
| TCONS_00006062-exon-sc0000062-1491911889:298113..298385 | TCONS_00006062-exon-sc0000062-1491911889:298113..298385 | Clytia hemisphaerica | exon |
| TCONS_00006062-exon-sc0000062-1491911889:297608..297795 | TCONS_00006062-exon-sc0000062-1491911889:297608..297795 | Clytia hemisphaerica | exon |
| TCONS_00006062-exon-sc0000062-1491911889:296371..296625 | TCONS_00006062-exon-sc0000062-1491911889:296371..296625 | Clytia hemisphaerica | exon |
| TCONS_00006062-exon-sc0000062-1491911889:294490..295067 | TCONS_00006062-exon-sc0000062-1491911889:294490..295067 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:294490..298385 - |
Blast
The following BLAST results are available for this feature:
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