TCONS_00006032 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006032
Unique NameTCONS_00006032
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006032 ID=TCONS_00006032|Name=TCONS_00006032|organism=Clytia hemisphaerica|type=transcript|length=1058bp
AAAATCAACACGATGCCAACCAAACAGATGAGCACAAAAGAAATACATTA
TTATTGATAAAAGAATATGGAAATCTTCTCATGAGAAGCGAAGATGGAGC
GGTAATTATCACATTTTATGACTAAACATGGCTGTGTTTGGATTAAGAGC
CCGAGGGGCACTCggtttctaaacgacggcaCGTGACACCAAAAAAATAG
CTTTTAagatcggacccttacagttcAGCCTTTGAGCAGTAAAAAGGtgc
cctttcagtgcattttaccgaacgtttctgacccttgCAGTTTAGTTTGA
TTTCATAACTTATCTTGCTTAAAGCCACCTGAAACTGAGCCTGAGATCAA
ATGAAACTGGGTGCGAGTCAATGCAATTCAACAGTCTCagaacacaccct
tacagtttatccagctaaaagaagacccttgtagtgcactcCATCGGAAg
tatacccttacagtgcattttgaggGTCTTGAAAAACCTACGCTTAAGGG
CGGCAGatgccgtgggtcggaccatatgagtgccccattggttgaaaaaa
tcctaccgagtCTGCGAGAGTGTTTTTTAGTTAGAATTGGTAAAGAGAGT
TATCTTTCCCAAAATATTGAGTTAGTATAAATTTATATGTTCAAACCTTG
CCTTTTAGATCTACTAactcatatttttttaatagcTGGAAAACAAATTA
GATGTTGTATAGGAGGCAGAAGAAATATTTATCGAACCATATCGTATTGA
AACCATGACCTCAACGGAGTTATTGATCTATTCGGACAGGATAGCTTACA
TCGTTCAAGAAATGCTCAGTAAAACAGTTTCTGAAATGATAATGAAACTG
TGGCAGAACCTGATTGACTTCGTCAAAATTGCTATATCTCGTAGATATGC
TCTCAACAATGGCTTTTGCATAACGCATTCAGATGAGCTTAAGCTAATCA
AGTTTGAAGATTGTGGTTGTGTAAACACAAGAGAAAAGGATTTTGTAACG
ATTGATAGTGATACAGAATACGATACTGATGAATTTGAGACAGAAAGACC
ACCATCCA
Run BLAST on NCBI

protein sequence of TCONS_00006032-protein

>TCONS_00006032-protein ID=TCONS_00006032-protein|Name=TCONS_00006032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MTSTELLIYSDRIAYIVQEMLSKTVSEMIMKLWQNLIDFVKIAISRRYAL
NNGFCITHSDELKLIKFEDCGCVNTREKDFVTIDSDTEYDTDEFETERPP
S
Run BLAST on NCBI

transcript from alignment at sc0000062:781958..783198+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006032 ID=TCONS_00006032|Name=TCONS_00006032|organism=Clytia hemisphaerica|type=transcript|length=1241bp|location=Sequence derived from alignment at sc0000062:781958..783198+ (Clytia hemisphaerica)
AAAATCAACACGATGCCAACCAAACAGATGAGCACAAAAGAAATACATTA
TTATTGATAAAAGAATATGGAAATCTTCTCATGAGAAGCGAAGATGGAGC
GGTAATTATCACATTTTATGACTAAACATGGCTGTGTTTGGATTAAGAGC
CCGAGGGGCACTCggtttctaaacgacggcaCGTGACACCAAAAAAATAG
CTTTTAagatcggacccttacagttcAGCCTTTGAGCAGTAAAAAGGtgc
cctttcagtgcattttaccgaacgtttctgacccttgCAGTTTAGTTTGA
TTTCATAACTTATCTTGCTTAAAGCCACCTGAAACTGAGCCTGAGATCAA
ATGAAACTGGGTGCGAGTCAATGCAATTCAACAGTCTCagaacacaccct
tacagtttatccagctaaaagaagacccttgtagtgcactcCATCGGAAg
tatacccttacagtgcattttgaggGTCTTGAAAAACCTACGCTTAAGGG
CGGCAGatgccgtgggtcggaccatatgagtgccccattggttgaaaaaa
tcctaccgagtCTGCGAGAGTGTTTTTTAGTTAGAATTGGTAAAGAGAGT
TATCTTTCCCAAAATATTGAGTTAGTATAAATTTATATGTTCAAACCTTG
CCTTTTAGATCTACTAactcatatttttttaatagcTGGAAAACAAATTA
GATGTTGTATAGGAGGCAGAAGAAATATTTATCGAACCATATCGTATTGA
AACCATGACCTCAACGGAGTTATTGATCTATTCGGACAGGATAGCTTACA
TCGTTCAAGAAATGCTCAGTAAAACAGTTTCTGAAATGATAATGAAACTG
TGGCAGAACCTGATTGACTTCGTCAAAATTGCTATATCTCGTAGATATGC
TCTCAACAATGGCTTTTGCATAACGTAAGCTTTTTAACCAACTACTTAAG
CCTTAAGCTGCCGAGTACTTTTGGCTCAATAAACCTTTCTAGATCGAATT
TTACAGCAAAATGACACCGATCCTGGTTTTAGtttgattttgatgatata
ttaGAGGTAACCAACTGCTTGTCCATCATAACCAAAAAGGCTGAATTTTC
TCCTTAGGCATTCAGATGAGCTTAAGCTAATCAAGTTTGAAGATTGTGGT
TGTGTAAACACAAGAGAAAAGGATTTTGTAACGATTGATAGTGATACAGA
ATACGATACTGATGAATTTGAGACAGAAAGACCACCATCCA

Coding sequence (CDS) from alignment at sc0000062:781958..783198+

>TCONS_00006032 ID=TCONS_00006032|Name=TCONS_00006032|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000062:781958..783198+ (Clytia hemisphaerica)
ATGACCTCAACGGAGTTATTGATCTATTCGGACAGGATAGCTTACATCGT
TCAAGAAATGCTCAGTAAAACAGTTTCTGAAATGATAATGAAACTGTGGC
AGAACCTGATTGACTTCGTCAAAATTGCTATATCTCGTAGATATGCTCTC
AACAATGGCTTTTGCATAACGCATTCAGATGAGCTTAAGCTAATCAAGTT
TGAAGATTGTGGTTGTGTAAACACAAGAGAAAAGGATTTTGTAACGATTG
ATAGTGATACAGAATACGATACTGATGAATTTGAGACAGAAAGACCACCA
TCCATGACCTCAACGGAGTTATTGATCTATTCGGACAGGATAGCTTACAT
CGTTCAAGAAATGCTCAGTAAAACAGTTTCTGAAATGATAATGAAACTGT
GGCAGAACCTGATTGACTTCGTCAAAATTGCTATATCTCGTAGATATGCT
CTCAACAATGGCTTTTGCATAACGCATTCAGATGAGCTTAAGCTAATCAA
GTTTGAAGATTGTGGTTGTGTAAACACAAGAGAAAAGGATTTTGTAACGA
TTGATAGTGATACAGAATACGATACTGATGAATTTGAGACAGAAAGACCA
CCATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003442XLOC_003442Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006032-proteinTCONS_00006032-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006032-exon-sc0000062-1491911889:781958..782881TCONS_00006032-exon-sc0000062-1491911889:781958..782881Clytia hemisphaericaexon
TCONS_00006032-exon-sc0000062-1510915933:781958..782881TCONS_00006032-exon-sc0000062-1510915933:781958..782881Clytia hemisphaericaexon
TCONS_00006032-exon-sc0000062-1575043694:781958..782881TCONS_00006032-exon-sc0000062-1575043694:781958..782881Clytia hemisphaericaexon
TCONS_00006032-exon-sc0000062-1491911889:783065..783198TCONS_00006032-exon-sc0000062-1491911889:783065..783198Clytia hemisphaericaexon
TCONS_00006032-exon-sc0000062-1510915933:783065..783198TCONS_00006032-exon-sc0000062-1510915933:783065..783198Clytia hemisphaericaexon
TCONS_00006032-exon-sc0000062-1575043694:783065..783198TCONS_00006032-exon-sc0000062-1575043694:783065..783198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:781958..783198 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0417877	0	0.0946283	0.0462895	0.056353	0.178124	0.268623	0.100593	0.0704274	0.436178	0.338692	0.139152	0.305708	0.173172	0	0.152785	0.0627397	0.0321531	0.0444212	0.0464836	0	0.118242	0.0479129	0.0435598	2.51247	5.08527	0.114598	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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