TCONS_00006030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006030
Unique NameTCONS_00006030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1961

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006030 ID=TCONS_00006030|Name=TCONS_00006030|organism=Clytia hemisphaerica|type=transcript|length=1961bp
CGAATTTTAGCTAGCTAAATCACATCGAGGCGCTTCCTTAGCCTGCCTAT
CATCTCAACAATATTTTAGGACGACAAGGACTAGACTGCGAGCCGCAAAG
TAATCTATTCGCTACGCTGTAGCAAATagaacacatttgtggagcaatac
CTTACCTGCTTCATCATTTTCATAATGGTAGCTGAAAGGGACATAATTAT
GGCGGGAGAAAATGTTTCACTGGAAAATTTGCTTGAACAATTCAACTTCA
ATGCTACAAGAGATACCAGCAAATTTGTTTCTGCTTTGGAAAATCTTCTA
ACGCTTGCTACTAGTAGCGAAGAAAAGCTTAAATGGATTGCTGCAGGAAT
AGATGTGAATATTTTGTTCAATGAATTGGGTGATTCTGGAGAAGATTCAA
TATTGAAACAGCCTCAAAATAAAAGTATTCTAGCTGATTTATGTAAGCTG
TTAGGACTTATCTTGAGTACTATTAGTCCAGTGGATGTCTTTACACAATA
TTTAAGTCATATTGTAAAGAGCTTTGATGCTGGTATTGAGGATTATCTTG
CAGAATGTCTCCATCAAACAATGCGTCTAACTCAAACTGGAAACATTGGA
ATGTTTATGTGTAACCCTGAAATATTTGTCTTCATTGTCAAAGGGCTTGG
TTTCAAAAGCCTTAGTGTTGCCAGCTTATCTCGGAAAGTTATTGTCAAGC
TGTTTGAATATACAGAACAGACTGAGTGGTTGTTCTCGAATGAAGTTTAT
GGTGTTTGTAGAAATCTGATGGAGAAAGATGCAACTGTACGTTTCAGAGT
CTATGAAATATTTCTTGAACTTCTCAAGCTGCAACCAGAAGACCTCTTTA
AGTTTGCAGAACTTGGCTTATTTGATTGTCTTTTCACTGACTTAATGGAC
AGTGGGGATGTACTTTCTCAGTTAAATGCCTTGGAACACATCACACAGCT
GGCATTGACAGGGATACAAGGGTTGGAATTTGTGGAACAAAGAGGCATCA
TGAGTTGGCTTCAAAATACCTTTTCATCTGAGGATCCATTCACCCAATTC
CTTCTTCCAGgTGCCATTAAATGTTTCGGAGTTTTGTGTGCAAGCAATCC
TACCAAAATTATCCCCAAGTATCAAAACCTATTGACAGTCATTTATAAGA
ATCTATCCAGTCCTGACACTTCACTACGTTGCCTTTGTGTGGAGACATTG
GCTTTCATTTCGTCGAGAAGTGATGCTTTGAAAGAGCTGTACAAACATCC
AGATTCATTAAAAGAATCAACGGAAAAGATTGGGCAAATGGTCGCCTCTC
ATGCCGAAGATGAACAAACTAAAAGCAAAATCCTTGATGCTGTAGCAACC
ATGTTTTTACACGATCCAGCTGATGTAGAGTTATCGATGATANGCAAAAT
CCTTGTTGCTGTAGCAACCATGTTTTTACACGATCCAGCTGATGTTGAGT
TATCGATGATTTGTGAGAAACTTTTCCATCATTTATCGAGTGAACCGGTC
AGATTCTTGATGGATTTGGCTAAACAACCTTTCTTGGCAATACGTTATGG
TGCTTTGAAGTTGTTCTGTAATGTATCAAAGTTTTCGTGGGTGGAACAAG
ATATGGCTCTTTGTGCAGgcttCTTGGAATATTTATTGGATAGAAAGACG
GAATCAGAAAAAGAAGGCCGCGAATTGAAATATCACGTCGTCAAAAATCT
CGCCATATCAAATACGGCTGGTGAAAACCTGGGTATGGGTTTTCATAATA
AAATATTGGCGTATGCGAAGGAAGGACCTTTTTATTCTGAAGGACAAGTC
GCCGTTACATACCAAAGAGAAAATTGAGCATTCCCTAGATTGAACTCTAA
AAATTTTGCAATTCTTACATTTTGACTATTTTGACtatgtttccaaattt
tattttataaaactgCACAAGAAAAAAAAGCGAGCATTTCCACTCAAATA
AAATTCAATTA
Run BLAST on NCBI

protein sequence of TCONS_00006030-protein

>TCONS_00006030-protein ID=TCONS_00006030-protein|Name=TCONS_00006030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=550bp
MVAERDIIMAGENVSLENLLEQFNFNATRDTSKFVSALENLLTLATSSEE
KLKWIAAGIDVNILFNELGDSGEDSILKQPQNKSILADLCKLLGLILSTI
SPVDVFTQYLSHIVKSFDAGIEDYLAECLHQTMRLTQTGNIGMFMCNPEI
FVFIVKGLGFKSLSVASLSRKVIVKLFEYTEQTEWLFSNEVYGVCRNLME
KDATVRFRVYEIFLELLKLQPEDLFKFAELGLFDCLFTDLMDSGDVLSQL
NALEHITQLALTGIQGLEFVEQRGIMSWLQNTFSSEDPFTQFLLPGAIKC
FGVLCASNPTKIIPKYQNLLTVIYKNLSSPDTSLRCLCVETLAFISSRSD
ALKELYKHPDSLKESTEKIGQMVASHAEDEQTKSKILDAVATMFLHDPAD
VELSMIXKILVAVATMFLHDPADVELSMICEKLFHHLSSEPVRFLMDLAK
QPFLAIRYGALKLFCNVSKFSWVEQDMALCAGFLEYLLDRKTESEKEGRE
LKYHVVKNLAISNTAGENLGMGFHNKILAYAKEGPFYSEGQVAVTYQREN
Run BLAST on NCBI

transcript from alignment at sc0000062:645193..647918+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006030 ID=TCONS_00006030|Name=TCONS_00006030|organism=Clytia hemisphaerica|type=transcript|length=2726bp|location=Sequence derived from alignment at sc0000062:645193..647918+ (Clytia hemisphaerica)
CGAATTTTAGCTAGCTAAATCACATCGAGGCGCTTCCTTAGCCTGCCTAT
CATCTCAACAATATTTTAGGACGACAAGGACTAGACTGCGAGCCGCAAAG
TAATCTATTCGCTACGCTGTAGCAAATagaacacatttgtggagcaatac
CTTACCTGCTTCATCATTTTCATAATGGTAGCTGAAAGGGACATAATTAT
GGCGGGAGAAAATGTTTCACTGGAAAATTTGCTTGAACAATTCAACTTCA
ATGCTACAAGAGATACCAGCAAATTTGTTTCTGCTTTGGAAAATCTTCTA
ACGCTTGCTACTAGTAGCGAAGAAAAGCTTAAATGGATTGCTGCAGGAAT
AGATGTGAATATTTTGTTCAATGAATTGGGTGATTCTGGAGAAGATTCAA
TATTGAAACAGCCTCAAAATAAAAGTATTCTAGCTGATTTATGTAAGCTG
TTAGGACTTATCTTGAGTACTATTAGTCCAGTGGATGTCTTTACACAATA
TTTAAGTCATATTGTAAAGAGCTTTGATGCTGGTATTGAGGATTATCTTG
CAGAATGTCTCCATCAAACAATGCGTCTAACTCAAACTGGAAACATTGGA
ATGTTTATGTGTAACCCTGAAATATTTGTCTTCATTGTCAAAGGGCTTGG
TTTCAAAAGCCTTAGTGTTGCCAGCTTATCTCGGAAAGTTATTGTCAAGC
TGTTTGAATATACAGAACAGACTGAGTGGTTGTTCTCGAATGAAGTTTAT
GGTGTTTGTAGAAATCTGATGGAGAAAGATGCAACTGTACGTTTCAGAGT
CTATGAAATATTTCTTGAACTTCTCAAGCTGCAACCAGAAGACCTCTTTA
AGTTTGCAGAACTTGGCTTATTTGATTGTCTTTTCACTGACTTAATGGAC
AGTGGGGATGTACTTTCTCAGTTAAATGCCTTGGAACACATCACACAGCT
GGCATTGACAGGGATACAAGGGTTGGAATTTGTGGAACAAAGAGGCATCA
TGAGTTGGCTTCAAAATACCTTTTCATCTGAGGATCCATTCACCCAATTC
CTTCTTCCAGGTattatttttaatataaaatCAAGAACATTAAACAAACT
GTTGTTGAAATccactttccaaaaaaaattgttcttgtattttgaaaagg
aaatttATGATGAGTATTATTTGTAGAGTTAGTTCatgtaatgtttccag
ctcgtacccaaatagagacttacgcatgcgtaatttgccgttcttttaaa
ccacatgtagttaattcccgtgataaacaaagatgAATAAATCTCAAGGG
TGGTACAGTCAATTTCGGCCGGGGTCGTGGACAgggaaatatgaaatttg
taaaACAGCATCATCTCCAGATTAGTTAAGCTTTAGAGTCTAGAAATATA
CATCATATCATAAAATGAGGAGGAAAATTAATAAACTCTTCCtgagttat
tttttgttttttactatCAGGATTCTGCTTTATATCAAATTCTGTTATTG
GTTTGAATATGATATCACCCAAGATCTTTAAAGTTACAAAGAATCAAACC
TTCTAAACTATCTTCTCATagagttggaaaaaaatcacgaTCAATACACT
TctcattttactttttcaggTGCCATTAAATGTTTCGGAGTTTTGTGTGC
AAGCAATCCTACCAAAATTATCCCCAAGTATCAAAACCTATTGACAGTCA
TTTATAAGAATCTATCCAGTCCTGACACTTCACTACGTTGCCTTTGTGTG
GAGACATTGGCTTTCATTTCGTCGAGAAGTGATGCTTTGAAAGAGCTGTA
CAAACATCCAGATTCATTAAAAGAATCAACGGAAAAGATTGGGCAAATGG
TCGCCTCTCATGCCGAAGATGAACAAACTAAAAGCAAAATCCTTGATGCT
GTAGCAACCATGTTTTTACACGATCCAGCTGATGTAGAGTTATCGATGAT
ANGCAAAATCCTTGTTGCTGTAGCAACCATGTTTTTACACGATCCAGCTG
ATGTTGAGTTATCGATGATTTGTGAGAAACTTTTCCATCATTTATCGAGT
GAACCGGTCAGATTCTTGATGGATTTGGCTAAACAACCTTTCTTGGCAAT
ACGTTATGGTGCTTTGAAGTTGTTCTGTAATGTATCAAAGTTTTCGTGGG
TGGAACAAGATATGGCTCTTTGTGCAGGTAAATAATCAAAAGATTTAAAA
TGTCGATACATCTCATACATCTGCAAAGCCAACGTCACAGACTgtttttt
gtcaagaatttgAGACAAATTAGCCGAAAATATACAGTAAAAAAACAGTC
TATTTGCAAATTTCTCTAGTTCTCTAATGCGTGCGAATTGCGTTTCCTGT
TTCCTGGTAATGTttaccattttttattttcaggcttCTTGGAATATTTA
TTGGATAGAAAGACGGAATCAGAAAAAGAAGGCCGCGAATTGAAATATCA
CGTCGTCAAAAATCTCGCCATATCAAATACGGCTGGTGAAAACCTGGGTA
TGGGTTTTCATAATAAAATATTGGCGTATGCGAAGGAAGGACCTTTTTAT
TCTGAAGGACAAGTCGCCGTTACATACCAAAGAGAAAATTGAGCATTCCC
TAGATTGAACTCTAAAAATTTTGCAATTCTTACATTTTGACTATTTTGAC
tatgtttccaaattttattttataaaactgCACAAGAAAAAAAAGCGAGC
ATTTCCACTCAAATAAAATTCAATTA

Coding sequence (CDS) from alignment at sc0000062:645193..647918+

>TCONS_00006030 ID=TCONS_00006030|Name=TCONS_00006030|organism=Clytia hemisphaerica|type=CDS|length=4959bp|location=Sequence derived from alignment at sc0000062:645193..647918+ (Clytia hemisphaerica)
ATGGTAGCTGAAAGGGACATAATTATGGCGGGAGAAAATGTTTCACTGGA
AAATTTGCTTGAACAATTCAACTTCAATGCTACAAGAGATACCAGCAAAT
TTGTTTCTGCTTTGGAAAATCTTCTAACGCTTGCTACTAGTAGCGAAGAA
AAGCTTAAATGGATTGCTGCAGGAATAGATGTGAATATTTTGTTCAATGA
ATTGGGTGATTCTGGAGAAGATTCAATATTGAAACAGCCTCAAAATAAAA
GTATTCTAGCTGATTTATGTAAGCTGTTAGGACTTATCTTGAGTACTATT
AGTCCAGTGGATGTCTTTACACAATATTTAAGTCATATTGTAAAGAGCTT
TGATGCTGGTATTGAGGATTATCTTGCAGAATGTCTCCATCAAACAATGC
GTCTAACTCAAACTGGAAACATTGGAATGTTTATGTGTAACCCTGAAATA
TTTGTCTTCATTGTCAAAGGGCTTGGTTTCAAAAGCCTTAGTGTTGCCAG
CTTATCTCGGAAAGTTATTGTCAAGCTGTTTGAATATACAGAACAGACTG
AGTGGTTGTTCTCGAATGAAGTTTATGGTGTTTGTAGAAATCTGATGGAG
AAAGATGCAACTGTACGTTTCAGAGTCTATGAAATATTTCTTGAACTTCT
CAAGCTGCAACCAGAAGACCTCTTTAAGTTTGCAGAACTTGGCTTATTTG
ATTGTCTTTTCACTGACTTAATGGACAGTGGGGATGTACTTTCTCAGTTA
AATGCCTTGGAACACATCACACAGCTGGCATTGACAGGGATACAAGGGTT
GGAATTTGTGGAACAAAGAGGCATCATGAGTTGGCTTCAAAATACCTTTT
CATCTGAGGATCCATTCACCCAATTCCTTCTTCCAGgTGCCATTAAATGT
TTCGGAGTTTTGTGTGCAAGCAATCCTACCAAAATTATCCCCAAGTATCA
AAACCTATTGACAGTCATTTATAAGAATCTATCCAGTCCTGACACTTCAC
TACGTTGCCTTTGTGTGGAGACATTGGCTTTCATTTCGTCGAGAAGTGAT
GCTTTGAAAGAGCTGTACAAACATCCAGATTCATTAAAAGAATCAACGGA
AAAGATTGGGCAAATGGTCGCCTCTCATGCCGAAGATGAACAAACTAAAA
GCAAAATCCTTGATGCTGTAGCAACCATGTTTTTACACGATCCAGCTGAT
GTAGAGTTATCGATGATANGCAAAATCCTTGTTGCTGTAGCAACCATGTT
TTTACACGATCCAGCTGATGTTGAGTTATCGATGATTTGTGAGAAACTTT
TCCATCATTTATCGAGTGAACCGGTCAGATTCTTGATGGATTTGGCTAAA
CAACCTTTCTTGGCAATACGTTATGGTGCTTTGAAGTTGTTCTGTAATGT
ATCAAAGTTTTCGTGGGTGGAACAAGATATGGCTCTTTGTGCAGgcttCT
TGGAATATTTATTGGATAGAAAGACGGAATCAGAAAAAGAAGGCCGCGAA
TTGAAATATCACGTCGTCAAAAATCTCGCCATATCAAATACGGCTGGTGA
AAACCTGGGTATGGGTTTTCATAATAAAATATTGGCGTATGCGAAGGAAG
GACCTTTTTATTCTGAAGGACAAGTCGCCGTTACATACCAAAGAGAAAAT
TGAATGGTAGCTGAAAGGGACATAATTATGGCGGGAGAAAATGTTTCACT
GGAAAATTTGCTTGAACAATTCAACTTCAATGCTACAAGAGATACCAGCA
AATTTGTTTCTGCTTTGGAAAATCTTCTAACGCTTGCTACTAGTAGCGAA
GAAAAGCTTAAATGGATTGCTGCAGGAATAGATGTGAATATTTTGTTCAA
TGAATTGGGTGATTCTGGAGAAGATTCAATATTGAAACAGCCTCAAAATA
AAAGTATTCTAGCTGATTTATGTAAGCTGTTAGGACTTATCTTGAGTACT
ATTAGTCCAGTGGATGTCTTTACACAATATTTAAGTCATATTGTAAAGAG
CTTTGATGCTGGTATTGAGGATTATCTTGCAGAATGTCTCCATCAAACAA
TGCGTCTAACTCAAACTGGAAACATTGGAATGTTTATGTGTAACCCTGAA
ATATTTGTCTTCATTGTCAAAGGGCTTGGTTTCAAAAGCCTTAGTGTTGC
CAGCTTATCTCGGAAAGTTATTGTCAAGCTGTTTGAATATACAGAACAGA
CTGAGTGGTTGTTCTCGAATGAAGTTTATGGTGTTTGTAGAAATCTGATG
GAGAAAGATGCAACTGTACGTTTCAGAGTCTATGAAATATTTCTTGAACT
TCTCAAGCTGCAACCAGAAGACCTCTTTAAGTTTGCAGAACTTGGCTTAT
TTGATTGTCTTTTCACTGACTTAATGGACAGTGGGGATGTACTTTCTCAG
TTAAATGCCTTGGAACACATCACACAGCTGGCATTGACAGGGATACAAGG
GTTGGAATTTGTGGAACAAAGAGGCATCATGAGTTGGCTTCAAAATACCT
TTTCATCTGAGGATCCATTCACCCAATTCCTTCTTCCAGgTGCCATTAAA
TGTTTCGGAGTTTTGTGTGCAAGCAATCCTACCAAAATTATCCCCAAGTA
TCAAAACCTATTGACAGTCATTTATAAGAATCTATCCAGTCCTGACACTT
CACTACGTTGCCTTTGTGTGGAGACATTGGCTTTCATTTCGTCGAGAAGT
GATGCTTTGAAAGAGCTGTACAAACATCCAGATTCATTAAAAGAATCAAC
GGAAAAGATTGGGCAAATGGTCGCCTCTCATGCCGAAGATGAACAAACTA
AAAGCAAAATCCTTGATGCTGTAGCAACCATGTTTTTACACGATCCAGCT
GATGTAGAGTTATCGATGATANGCAAAATCCTTGTTGCTGTAGCAACCAT
GTTTTTACACGATCCAGCTGATGTTGAGTTATCGATGATTTGTGAGAAAC
TTTTCCATCATTTATCGAGTGAACCGGTCAGATTCTTGATGGATTTGGCT
AAACAACCTTTCTTGGCAATACGTTATGGTGCTTTGAAGTTGTTCTGTAA
TGTATCAAAGTTTTCGTGGGTGGAACAAGATATGGCTCTTTGTGCAGgct
tCTTGGAATATTTATTGGATAGAAAGACGGAATCAGAAAAAGAAGGCCGC
GAATTGAAATATCACGTCGTCAAAAATCTCGCCATATCAAATACGGCTGG
TGAAAACCTGGGTATGGGTTTTCATAATAAAATATTGGCGTATGCGAAGG
AAGGACCTTTTTATTCTGAAGGACAAGTCGCCGTTACATACCAAAGAGAA
AATTGAATGGTAGCTGAAAGGGACATAATTATGGCGGGAGAAAATGTTTC
ACTGGAAAATTTGCTTGAACAATTCAACTTCAATGCTACAAGAGATACCA
GCAAATTTGTTTCTGCTTTGGAAAATCTTCTAACGCTTGCTACTAGTAGC
GAAGAAAAGCTTAAATGGATTGCTGCAGGAATAGATGTGAATATTTTGTT
CAATGAATTGGGTGATTCTGGAGAAGATTCAATATTGAAACAGCCTCAAA
ATAAAAGTATTCTAGCTGATTTATGTAAGCTGTTAGGACTTATCTTGAGT
ACTATTAGTCCAGTGGATGTCTTTACACAATATTTAAGTCATATTGTAAA
GAGCTTTGATGCTGGTATTGAGGATTATCTTGCAGAATGTCTCCATCAAA
CAATGCGTCTAACTCAAACTGGAAACATTGGAATGTTTATGTGTAACCCT
GAAATATTTGTCTTCATTGTCAAAGGGCTTGGTTTCAAAAGCCTTAGTGT
TGCCAGCTTATCTCGGAAAGTTATTGTCAAGCTGTTTGAATATACAGAAC
AGACTGAGTGGTTGTTCTCGAATGAAGTTTATGGTGTTTGTAGAAATCTG
ATGGAGAAAGATGCAACTGTACGTTTCAGAGTCTATGAAATATTTCTTGA
ACTTCTCAAGCTGCAACCAGAAGACCTCTTTAAGTTTGCAGAACTTGGCT
TATTTGATTGTCTTTTCACTGACTTAATGGACAGTGGGGATGTACTTTCT
CAGTTAAATGCCTTGGAACACATCACACAGCTGGCATTGACAGGGATACA
AGGGTTGGAATTTGTGGAACAAAGAGGCATCATGAGTTGGCTTCAAAATA
CCTTTTCATCTGAGGATCCATTCACCCAATTCCTTCTTCCAGgTGCCATT
AAATGTTTCGGAGTTTTGTGTGCAAGCAATCCTACCAAAATTATCCCCAA
GTATCAAAACCTATTGACAGTCATTTATAAGAATCTATCCAGTCCTGACA
CTTCACTACGTTGCCTTTGTGTGGAGACATTGGCTTTCATTTCGTCGAGA
AGTGATGCTTTGAAAGAGCTGTACAAACATCCAGATTCATTAAAAGAATC
AACGGAAAAGATTGGGCAAATGGTCGCCTCTCATGCCGAAGATGAACAAA
CTAAAAGCAAAATCCTTGATGCTGTAGCAACCATGTTTTTACACGATCCA
GCTGATGTAGAGTTATCGATGATANGCAAAATCCTTGTTGCTGTAGCAAC
CATGTTTTTACACGATCCAGCTGATGTTGAGTTATCGATGATTTGTGAGA
AACTTTTCCATCATTTATCGAGTGAACCGGTCAGATTCTTGATGGATTTG
GCTAAACAACCTTTCTTGGCAATACGTTATGGTGCTTTGAAGTTGTTCTG
TAATGTATCAAAGTTTTCGTGGGTGGAACAAGATATGGCTCTTTGTGCAG
gcttCTTGGAATATTTATTGGATAGAAAGACGGAATCAGAAAAAGAAGGC
CGCGAATTGAAATATCACGTCGTCAAAAATCTCGCCATATCAAATACGGC
TGGTGAAAACCTGGGTATGGGTTTTCATAATAAAATATTGGCGTATGCGA
AGGAAGGACCTTTTTATTCTGAAGGACAAGTCGCCGTTACATACCAAAGA
GAAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003440XLOC_003440Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006030-proteinTCONS_00006030-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006030-exon-sc0000062-1491911889:645193..646252TCONS_00006030-exon-sc0000062-1491911889:645193..646252Clytia hemisphaericaexon
TCONS_00006030-exon-sc0000062-1510915933:645193..646252TCONS_00006030-exon-sc0000062-1510915933:645193..646252Clytia hemisphaericaexon
TCONS_00006030-exon-sc0000062-1575043694:645193..646252TCONS_00006030-exon-sc0000062-1575043694:645193..646252Clytia hemisphaericaexon
TCONS_00006030-exon-sc0000062-1491911889:646812..647369TCONS_00006030-exon-sc0000062-1491911889:646812..647369Clytia hemisphaericaexon
TCONS_00006030-exon-sc0000062-1510915933:646812..647369TCONS_00006030-exon-sc0000062-1510915933:646812..647369Clytia hemisphaericaexon
TCONS_00006030-exon-sc0000062-1575043694:646812..647369TCONS_00006030-exon-sc0000062-1575043694:646812..647369Clytia hemisphaericaexon
TCONS_00006030-exon-sc0000062-1491911889:647576..647918TCONS_00006030-exon-sc0000062-1491911889:647576..647918Clytia hemisphaericaexon
TCONS_00006030-exon-sc0000062-1510915933:647576..647918TCONS_00006030-exon-sc0000062-1510915933:647576..647918Clytia hemisphaericaexon
TCONS_00006030-exon-sc0000062-1575043694:647576..647918TCONS_00006030-exon-sc0000062-1575043694:647576..647918Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:645193..647918 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.1441	44.9723	39.7893	33.8845	46.69	39.4075	25.7168	25.4896	19.2147	13.7398	12.506	14.8097	9.16912	7.64448	14.4841	18.1191	27.4953	26.4487	7.8925	7.30093	22.679	20.1	27.5141	26.5631	29.6606	26.0646	15.8758	13.9507	12.1675	13.9878
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019538PSMD5
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Biological Process
TermDefinition
GO:0043248proteasome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043248 proteasome assembly
molecular_function GO:0005488 binding
Blast
[Close]
BLAST of TCONS_00006030 vs. Swiss-Prot (Human)
Match: PSMD5 (26S proteasome non-ATPase regulatory subunit 5 OS=Homo sapiens GN=PSMD5 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 5.878e-40
Identity = 110/413 (26.63%), Postives = 196/413 (47.46%), Query Frame = 1 
Query:  559 LHQTMRLTQTGN-IGMFMCNPEIFVFIVKGLGFKSLSVASLSRKVIVKLFEYTEQTEWLFSNEVYGVCRNLMEKDATVRFRVYEIFLELLKLQPEDLFKFAELGLFDCLFTDLMDSGDVLSQLNALEHITQLALTGIQGLEFVEQRGIMSWLQNTF--SSEDPFTQFLLPGAIKCFGVLCA-SNPTKIIPKYQNLLTVIYKNLSSPDTSLRCLCVETLAFISSRSDALKELYKHPDSLKESTEKIGQMVASHAEDEQTKSKILDAVATMFLHDPADVELSMIXKILVAVATMFLHDPADVELSMICEKLFHHLSSEPVRFLMDLAKQPFLAIRYGALKLFCNVSKFSWVEQDMALCAGFLEYLLDRKTESEKEGRELKYHVVKNLAISNTAGENLGMGFHNKILAYAKEGPFY 1785
            L Q  R+ +  + +   + N E+   IV  +G ++LSVA  + K + ++       E LF + +    +++M+ +  VR+RVYE+ +E+  + PE L      GL   L  +L    DVL +   +E +T LA T   G +++ Q G++  + N    +  DPF+ F LPG +K FG L    +P +I  +Y   +  +++ + S D ++  + V+T+  + S  +  + L K     +    +IG    S     + K + LDA++++    P                     +    +L  + E  F  LS +P+     ++ QPF  +   ALK+F  ++   W ++ M    GF+EY++DR  E +K  ++ KY +VK LA S T  E  G   + ++  Y  EGP+Y
Sbjct:  104 LSQIGRIVENSDAVTEILNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDIVRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGE-DVLVRATCIEMVTSLAYTH-HGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKVFEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQ--SKNAPVELKIRCLDAISSLLYLPP---------------------EQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLRLRTYLSEGPYY 491
The following BLAST results are available for this feature:
BLAST of TCONS_00006030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSMD55.878e-4026.6326S proteasome non-ATPase regulatory subunit 5 OS=... [more]
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