TCONS_00006030-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006030-protein
Unique Name	TCONS_00006030-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	550

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006030-protein ID=TCONS_00006030-protein|Name=TCONS_00006030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=550bp
MVAERDIIMAGENVSLENLLEQFNFNATRDTSKFVSALENLLTLATSSEE
KLKWIAAGIDVNILFNELGDSGEDSILKQPQNKSILADLCKLLGLILSTI
SPVDVFTQYLSHIVKSFDAGIEDYLAECLHQTMRLTQTGNIGMFMCNPEI
FVFIVKGLGFKSLSVASLSRKVIVKLFEYTEQTEWLFSNEVYGVCRNLME
KDATVRFRVYEIFLELLKLQPEDLFKFAELGLFDCLFTDLMDSGDVLSQL
NALEHITQLALTGIQGLEFVEQRGIMSWLQNTFSSEDPFTQFLLPGAIKC
FGVLCASNPTKIIPKYQNLLTVIYKNLSSPDTSLRCLCVETLAFISSRSD
ALKELYKHPDSLKESTEKIGQMVASHAEDEQTKSKILDAVATMFLHDPAD
VELSMIXKILVAVATMFLHDPADVELSMICEKLFHHLSSEPVRFLMDLAK
QPFLAIRYGALKLFCNVSKFSWVEQDMALCAGFLEYLLDRKTESEKEGRE
LKYHVVKNLAISNTAGENLGMGFHNKILAYAKEGPFYSEGQVAVTYQREN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003440	XLOC_003440	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006030	TCONS_00006030	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019538	PSMD5
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0043248	proteasome assembly

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043248	proteasome assembly
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019538	26S proteasome non-ATPase regulatory subunit 5	PFAM	PF10508	Proteasom_PSMB	coord: 407..546 e-value: 2.3E-27 score: 95.6 coord: 34..403 e-value: 2.7E-44 score: 151.4
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 15..187 e-value: 0.074 score: 11.1 coord: 191..511 e-value: 1.1E-18 score: 66.6
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 197..510

Blast

[Close]

BLAST of TCONS_00006030-protein vs. Swiss-Prot (Human)
Match: PSMD5 (26S proteasome non-ATPase regulatory subunit 5 OS=Homo sapiens GN=PSMD5 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.193e-40
Identity = 110/413 (26.63%), Postives = 196/413 (47.46%), Query Frame = 0

Query:  129 LHQTMRLTQTGN-IGMFMCNPEIFVFIVKGLGFKSLSVASLSRKVIVKLFEYTEQTEWLFSNEVYGVCRNLMEKDATVRFRVYEIFLELLKLQPEDLFKFAELGLFDCLFTDLMDSGDVLSQLNALEHITQLALTGIQGLEFVEQRGIMSWLQNTF--SSEDPFTQFLLPGAIKCFGVLCA-SNPTKIIPKYQNLLTVIYKNLSSPDTSLRCLCVETLAFISSRSDALKELYKHPDSLKESTEKIGQMVASHAEDEQTKSKILDAVATMFLHDPADVELSMIXKILVAVATMFLHDPADVELSMICEKLFHHLSSEPVRFLMDLAKQPFLAIRYGALKLFCNVSKFSWVEQDMALCAGFLEYLLDRKTESEKEGRELKYHVVKNLAISNTAGENLGMGFHNKILAYAKEGPFY 537
            L Q  R+ +  + +   + N E+   IV  +G ++LSVA  + K + ++       E LF + +    +++M+ +  VR+RVYE+ +E+  + PE L      GL   L  +L    DVL +   +E +T LA T   G +++ Q G++  + N    +  DPF+ F LPG +K FG L    +P +I  +Y   +  +++ + S D ++  + V+T+  + S  +  + L K     +    +IG    S     + K + LDA++++    P                     +    +L  + E  F  LS +P+     ++ QPF  +   ALK+F  ++   W ++ M    GF+EY++DR  E +K  ++ KY +VK LA S T  E  G   + ++  Y  EGP+Y
Sbjct:  104 LSQIGRIVENSDAVTEILNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDIVRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGE-DVLVRATCIEMVTSLAYTH-HGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKVFEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQ--SKNAPVELKIRCLDAISSLLYLPP---------------------EQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLRLRTYLSEGPYY 491

The following BLAST results are available for this feature:

BLAST of TCONS_00006030-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006030-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PSMD5	1.193e-40	26.63	26S proteasome non-ATPase regulatory subunit 5 OS=...	[more]

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TCONS_00006030-protein (polypeptide) - C. hemisphaerica