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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006020 ID=TCONS_00006020|Name=TCONS_00006020|organism=Clytia hemisphaerica|type=transcript|length=2643bpRun BLAST on NCBI protein sequence of TCONS_00006020-protein >TCONS_00006020-protein ID=TCONS_00006020-protein|Name=TCONS_00006020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp MIHSLFLINNTGDIFLEKHWKSVVPRTICDYFFEAQRKTTDPHDIPPVIARun BLAST on NCBI transcript from alignment at sc0000062:552441..570004+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006020 ID=TCONS_00006020|Name=TCONS_00006020|organism=Clytia hemisphaerica|type=transcript|length=17564bp|location=Sequence derived from alignment at sc0000062:552441..570004+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000062:552441..570004+ >TCONS_00006020 ID=TCONS_00006020|Name=TCONS_00006020|organism=Clytia hemisphaerica|type=CDS|length=21318bp|location=Sequence derived from alignment at sc0000062:552441..570004+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006020 vs. Swiss-Prot (Human)
Match: AP3M1 (AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1 PE=1 SV=1) HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0 Identity = 281/419 (67.06%), Postives = 347/419 (82.82%), Query Frame = 3
Query: 375 MIHSLFLINNTGDIFLEKHWKSVVPRTICDYFFEAQRKTTDPHDIPPVIATPHHYLIQIYRNEVYFVSVAQSEVPPLFVIEFLHKVFDTFVDYFNDCNEQIIMDQIVVVYELLEEMLDNGFPLATESNILKELIKPPNIINKVVNTVTGKTNMSSELPTGSLSNVPWRRAGVKYANNEIYFDLIEEIDCIIDKQGQLINIEIQGQIESYCRLSGMPDLCLSFINPRLLEDVSFHPCVRLKRWENEKVLSFMPPDGSYKLLSYHLSG-GMIQLPIYVKPQISFISGSS-GRFDLTIGQKANLGKTIEQCVATIQMPQQVLHCNLTPSVGNQSFDPVKKILRWDIGKIQAQKTLPTLRGNISLVTGAPPPEDMPIITMQFRIGQFAISGIKVNRLDVYGERYKPFKGVKYVTKAGKFQVRT 1625
MIHSLFLIN +GDIFLEKHWKSVV +++CDYFFEAQ K D ++PPVI+TPHHYLI IYR++++FVSV Q+EVPPLFVIEFLH+V DTF DYF +C+E I D +V+VYELLEEMLDNGFPLATESNILKELIKPP I+ VVN++TG +N+ LPTG LSN+PWRRAGVKY NNE YFD++EEID IIDK G + EIQG I++ +LSGMPDL LSF+NPRLL+DVSFHPC+R KRWE+E+VLSF+PPDG+++L+SY +S ++ +P+YVK ISF SS GRFD+TIG K N+GKTIE T+ MP+ VL+ NLTP+ G+ +FDPV K+L WD+GKI QK LP+L+G ++L +GAP PE+ P + +QF+I Q AISG+KVNRLD+YGE+YKPFKGVKYVTKAGKFQVRT
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQK-LPSLKGLVNLQSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT 418 The following BLAST results are available for this feature:
BLAST of TCONS_00006020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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