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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005991 ID=TCONS_00005991|Name=TCONS_00005991|organism=Clytia hemisphaerica|type=transcript|length=2096bp
TTCGAATAAACGCGACCACAATACTGTGCTATTGGACTCCCTCAAATTCC
ATAATATGATAGATTTTGAAGGGCATCATTCGTCTCAGGTGAAGAGACAA
TTTTGTGATTAAACCAGTCAGAAAAATTGTGATATTACGTGTGTAAATAC
AATAGTCATGTTGGAGGGTACTGAAATACCGTTTTGACTTATTCTACTGA
GAGTTATTtacatttcaatttttgaagtcaTAAAAGAATCTCAAATTGaa
aaaatcagaCGACCAGCAGGATGGAGAACGAAGATGCATTTAAGGCATTC
CGACGGGCGGTACAAAACGCCCACCACAAAGAAGACCCAATGTTTATCCC
TATACAAAGTCCGCCCTTTAGTAGAATTCCACTAAATGAAGAAACGCCAC
CACGCCCTCATTTCTTGCACTTAGTACTCGTGCTTAACTACAGAGacgtt
ttaaagattttaacatttttgttgGTCATGTTATCTTTAATTCCGCTAAT
AATGCGTTTCCGTAAGCGACTCAGACATGAGCGTATGTATAAAGTACGAA
AAGCCATACAAACAATATTCGCTTTCTTGAATGTTATATGGATCATTGGG
TGCGTTTGTTTACTGATAATGAGTGCTCATATTTTCTTATCAAATTACCA
AGACAAAGTTGAGAGAATCGAGAAAACATTTCCGTGGTATATTATAACGA
TCATTTTATGTTGTATAATCGAGATTGTTGAATCCATTTTTGGTCTCAGT
GAGCCAGTTATAACTGTACTATCAACAGAGAAAACAGTGATTGATCTGAA
ACACGGAAACAAATGTAGCCCCTTGACCAGAGCTGACGGTAACAATAATG
GATGCAATAAGAAAGCAGATGATGAGAAATTGTTATTGGCTTAATTGCGT
GGTAACATGTGAAGAACCTATCATTTGCGGACACTCCCTCGTTAACGGAC
ACTAGATCCGGACAATCTTTCACTTCaaggaagaaaattttcattaacaG
ATATATACGCGTTCTTTCATTTGGTTATTTGAGTTGTGTAGTTATTGGCG
AGCCATCATTCTTAGCAGAATACTTTTCTTAAAGCCTCAATTAGTCTTAA
TGCTGTAATAGGCTCATTTGCAGATTGCATTTTGTTGTCTGGGAGAAGGG
AGATTTATTCCtttgaaatttcataaatcgaTACTTAGCAATAGTGCTTA
GGGATGAAATTATAACTTTTTCCAGAGTCGCCTGTGTATTAATACTGGAG
CACTTTTTAAAGTGTTTGGGTAAACACACTAATATACCCCTATCAACCCT
AAGTGGTACAGTCGTCTTTCGAGGGGATTGGTAATGAATTTACAGGGAAA
ATTTGCGACTTTTAGCCATTAGCTCAACCAAGTTGACATTGACACTTATC
ACTTGTAAGGAAGGGTATTTTACATTTTCCACAAGAATGGAACTCTTTTC
TTTACCACTTTTGCCAGTATAATAAACAAGTTCGAGCAAATAAAACCTTC
GAAGAACGGTAACGGTAACGGTATAAGTTTGCCCGAATCTACGGTTAATT
TCAGATGAACTTGGGGTTTTTATTTTGACTCATTTACTAGGTAGGTAAAA
ACAACCCTGCTAATGTATCGTACTGTCTGGCGTGAAAACCAGAGAAATAC
TTATGTTTCCCAGTGTGGAAATCAGCGAATTCTTAGCAATTAACACAGTT
TTTGACACCAGAGATGCCCAAGGATGGAAAAGCCAATTTGGTTCTTAACA
TAATCAAAAGACTTTCAGTCTCATTGAAAGTCTTATTGATTTCTTagctt
ttattacttttttttacGTTCTAAATCTATAATTTGTAATTAATTTGTAt
atagattttttccaaataagataaaaatattaaataagtCCAGTCTTATC
AAAAGAGACCTGTAAGACAAAACTTTCCTTGAGATCATTGAAATCGCGTA
TAATAAAAGATTGAAACGGTCATCGTAAAGTCTACGTTATTCTTAATACA
CCTTCTCGACCATAGTAGCACGGTCAGTAGCCCGGggccacttatagctt
tttgatagactggatggcgctgataagtggcctgGCGTAAATTGGC Run BLAST on NCBI protein sequence of TCONS_00005991-protein >TCONS_00005991-protein ID=TCONS_00005991-protein|Name=TCONS_00005991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MENEDAFKAFRRAVQNAHHKEDPMFIPIQSPPFSRIPLNEETPPRPHFLH
LVLVLNYRDVLKILTFLLVMLSLIPLIMRFRKRLRHERMYKVRKAIQTIF
AFLNVIWIIGCVCLLIMSAHIFLSNYQDKVERIEKTFPWYIITIILCCII
EIVESIFGLSEPVITVLSTEKTVIDLKHGNKCSPLTRADGNNNGCNKKAD
DEKLLLA Run BLAST on NCBI transcript from alignment at sc0000062:59999..65095+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005991 ID=TCONS_00005991|Name=TCONS_00005991|organism=Clytia hemisphaerica|type=transcript|length=5097bp|location=Sequence derived from alignment at sc0000062:59999..65095+ (Clytia hemisphaerica)
TTCGAATAAACGCGACCACAATACTGTGCTATTGGACTCCCTCAAATTCC
ATAATATGATAGATTTTGAAGGGCATCATTCGTCTCAGGTGAAGAGACAA
TTTTGTGATTAAACCAGTCAGAAAAATTGTGATATTACGTGTGTAAATAC
AATAGTCATGTTGGAGGGTACTGAAATACCGTTTTGACTTATTCTACTGA
GAGTTATTtacatttcaatttttgaagtcaTAAAAGAATCTCAAATTGGT
aaggtttctttttcttttttaagggaGACACTTTACTTCTAGCATCTAGG
GCATCTTTATCACGGGGTTACTTCTCACTTTCCTTAAAACTGTATTTAAT
ACTTTGTAACACAATTCTTCAAGAATTAGATTTcttattcttaaatttta
atCTTCAATTACAATCCAATTAGTATTATAAAGTAGATATAGAGGTATCA
TAGTGGATGGATACGATGGCCCAGAAGGGCCAAAacagttcttataaatt
tgtgaactagaactgtctagggtcaatggcccagaaggctcaagtgacac
tgcgcacttctgactttttgtcaGGGCGGAAATTTCCAAGCGAGCGGCCC
GcgcgatgaaatttttttcggtctttaaaatgaatgtcgagTTACGCANT
TTTTTTCAGGGCGGAAAATTTCCAAGCGAGCGGCCCGcgcgatgaaattt
ttttcggtctttaaaatgaatgtcgagTTACGCAAAATGAGTTAACATTT
CTGAGTTGTTCATATCAAGAGTTACAGGCTAAAATTTCTGAGTTAAGTGC
TAGTCAGCAAAATCCGCCCCAGTAGCAAAAATCGGGGAAGCTAAAANccc
cccccccccagtggcaTAAATCGGGGAAGCTAAAAGTgaacaaatatcaa
ctttgtttttttttgcctcCACGCCGCTAGCATTTTCCGCCATTGGACCA
CCCTAGTGCATGAAAACTAGAAAGTGTGTGGgtgtgttttgatttttctg
ctgTGAACGCCAGAATCGAGAATCTGAGAATCTacaggaaggaaaataac
tcgaaaatttaaaagaaacgaaaccgagtaaaaaaacgagaaatgattcg
aaaatttaaattagttaAGATACCATCAGAGATAACTCGAGATTTTAAAT
TCACGGGAAAAAAACGACCTACAAAATTGAGAATGACGTCATATAgaagg
tacaaaatgacgtcaaaatttccgaaaaatgacgtcataactcggttttt
tcgtaacttggttttttttaactcgagaaaaatagCTCGGGATTTCCGAG
CCTCTTTGTTATTATCATTAACTCATTTATTACAACTCGGTATCTATTTT
GTTGACCAGAACGGCTATCTTTCGAGGGGGACTTTTGcgtctctaaaata
tttttagaagtgcgtagtgtcgtcacaaaaaaactcggaagtgcgcagtg
tcttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGTCtt
gtgagccttctgggccatgaccctagacagttctagttcacaaattttat
aagaactggaagtgcgtggtgagccttaggggccatcgtaGATGGAGGCT
TGTCGTATCTTGGATcgcgagatttacgtttggctacgtttcaagagatt
cttctcccatcccAACATCGCTTTATTTCACTCACAATTTTATTAACGCA
ACACTAAGTTTACTCTATGAATTTGATTGGATGTTGAAGGTTTAATTATC
ACACTACATTTTTATAATACAtccaatttttgaagccttcggatgttctt
aacgttttgagttttaagcctaaaaatgttcttaacatgttcttattttg
accaattattgagtatttttgctcatcttcctaagaaattgggtgtttta
gagtctgcaaagctttaaaatgttcttaacttgttcttaacattttggcc
gtggaagtcttatgttcttataaagtttataaagtttttataaaaaccag
gCCGCCAGCATCCTTCAGATTTTTTGTTATAAGGATGCGAATCGGCGTCA
CGACCGCTTATTTTTGCCAAgcaagtttttttaaatgacagaaattgttG
ACCTCCTTAAACTTTCAGGAAGAAGCATatcacacgttttttataagaac
aaactattttaaacataaggtttcgatgggcaaaatattaagaacaagtt
aagaacatttaaagggtttataggctctaaaacacccaatttcttagtgA
AATGGACAAAGATTcttaaaaaatggcgaaaatcagaacatattaagaac
atttttagacttaaaacttaaaaagttaagaacattcgaacgTAAATCTT
CAGAGATGCGCGAAGCCTACCAGGAGGCTTCCTGTTGAAGCTCGCTTGTT
CTTATTTCaaaagcaaaattattttagatttaATTGCAATCACCTTTAGT
GTGCTCATAATTAAGGCAGTTTttaattaagaaaaaataatgacTCAAAA
TAAGTTGCCAAGTAAGCAAATGGCAATTTTGCTGAATATCATTATGTAGC
ATTTTTTCCTCGACAATTTGCCTTTTATTTTGCTTAAATgtaaacacgtt
ttttttattagaacacctaaaatttggctgagcctggatgtgcttatttt
tttAGCAATTTTCAGCCTAAaatgttcttaaatgcgttcttaatttttca
gactactctaaatcgactaACAAGGAAAGTTCATTTACTCTAAAGCTCTT
TTATCAGGGTTTGTTTTATAAACAAGAGGCTTGAAAATAACTTAgggttt
ggaaaaatttgaccaACATGGATTCTTTGCCGGGATCGGGTTTTGACtgg
taaaatatttcttaaaaatttaataTATTGGGCAAAGTAAAAATTGGAct
ggaaaaaaatcgaagatAGATATTATGTAGTGGTTCGGTTATGAtgcaaa
aaggttttgaaataaaatatttaaacgGACATTGGTGTGAACTCTGATAC
TTGTTAAAACACTTCAATGTAAACTCGAAAGGGCTGTTATTATATTATGC
ATCTGCGAGTAACATACATGATCTTTCTCTAATGGAGGGcattttttcat
acttttttatgTCAGCAAGTTTTTTAAAtgtataatataataaaatcCAT
AAAAATGATCCGGCGATTCTTTCAGTATTGTTTGAATTCtttatttcaga
aaaaatcagaCGACCAGCAGGATGGAGAACGAAGATGCATTTAAGGCATT
CCGACGGGCGGTACAAAACGCCCACCACAAAGAAGACCCAATGTTTATCC
CTATACAAAGTCCGCCCTTTAGTAGAATTCCACTAAATGAAGAAACGCCA
CCACGCCCTCATTTCTTGCACTTAGTACTCGTGCTTAACTACAGAGacgt
tttaaagattttaacatttttgttgGTCATGTTATCTTTAATTCCGCTAA
TAATGCGTTTCCGTAAGCGACTCAGACATGAGCGTATGTATAAAGTACGA
AAAGCCATACAAACAATATTCGCTTTCTTGAATGTTATATGGATCATTGG
GTGCGTTTGTTTACTGATAATGAGTGCTCATATTTTCTTATCAAATTACC
AAGACAAAGTTGAGAGAATCGAGAAAACATTTCCGTGGTATATTATAACG
ATCATTTTATGTTGTATAATCGAGATTGTTGAATCCATTTTTGGTCTCAG
TGAGCCAGTTATAACTGTACTATCAACAGAGAAAACAGTGATTGATCTGA
AACACGGAAACAAATGTAGCCCCTTGACCAGAGCTGACGGTAACAATAAT
GGATGCAATAAGAAAGCAGATGATGAGAAATTGTTATTGGCTTAATTGCG
TGGTAACATGTGAAGAACCTATCATTTGCGGACACTCCCTCGTTAACGGA
CACTAGATCCGGACAATCTTTCACTTCaaggaagaaaattttcattaaca
GATATATACGCGTTCTTTCATTTGGTTATTTGAGTTGTGTAGTTATTGGC
GAGCCATCATTCTTAGCAGAATACTTTTCTTAAAGCCTCAATTAGTCTTA
ATGCTGTAATAGGCTCATTTGCAGATTGCATTTTGTTGTCTGGGAGAAGG
GAGATTTATTCCtttgaaatttcataaatcgaTACTTAGCAATAGTGCTT
AGGGATGAAATTATAACTTTTTCCAGAGTCGCCTGTGTATTAATACTGGA
GCACTTTTTAAAGTGTTTGGGTAAACACACTAATATACCCCTATCAACCC
TAAGTGGTACAGTCGTCTTTCGAGGGGATTGGTAATGAATTTACAGGGAA
AATTTGCGACTTTTAGCCATTAGCTCAACCAAGTTGACATTGACACTTAT
CACTTGTAAGGAAGGGTATTTTACATTTTCCACAAGAATGGAACTCTTTT
CTTTACCACTTTTGCCAGTATAATAAACAAGTTCGAGCAAATAAAACCTT
CGAAGAACGGTAACGGTAACGGTATAAGTTTGCCCGAATCTACGGTTAAT
TTCAGATGAACTTGGGGTTTTTATTTTGACTCATTTACTAGGTAGGTAAA
AACAACCCTGCTAATGTATCGTACTGTCTGGCGTGAAAACCAGAGAAATA
CTTATGTTTCCCAGTGTGGAAATCAGCGAATTCTTAGCAATTAACACAGT
TTTTGACACCAGAGATGCCCAAGGATGGAAAAGCCAATTTGGTTCTTAAC
ATAATCAAAAGACTTTCAGTCTCATTGAAAGTCTTATTGATTTCTTagct
tttattacttttttttacGTTCTAAATCTATAATTTGTAATTAATTTGTA
tatagattttttccaaataagataaaaatattaaataagtCCAGTCTTAT
CAAAAGAGACCTGTAAGACAAAACTTTCCTTGAGATCATTGAAATCGCGT
ATAATAAAAGATTGAAACGGTCATCGTAAAGTCTACGTTATTCTTAATAC
ACCTTCTCGACCATAGTAGCACGGTCAGTAGCCCGGggccacttatagct
ttttgatagactggatggcgctgataagtggcctgGCGTAAATTGGC Coding sequence (CDS) from alignment at sc0000062:59999..65095+ >TCONS_00005991 ID=TCONS_00005991|Name=TCONS_00005991|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0000062:59999..65095+ (Clytia hemisphaerica)
ATGGAGAACGAAGATGCATTTAAGGCATTCCGACGGGCGGTACAAAACGC
CCACCACAAAGAAGACCCAATGTTTATCCCTATACAAAGTCCGCCCTTTA
GTAGAATTCCACTAAATGAAGAAACGCCACCACGCCCTCATTTCTTGCAC
TTAGTACTCGTGCTTAACTACAGAGacgttttaaagattttaacattttt
gttgGTCATGTTATCTTTAATTCCGCTAATAATGCGTTTCCGTAAGCGAC
TCAGACATGAGCGTATGTATAAAGTACGAAAAGCCATACAAACAATATTC
GCTTTCTTGAATGTTATATGGATCATTGGGTGCGTTTGTTTACTGATAAT
GAGTGCTCATATTTTCTTATCAAATTACCAAGACAAAGTTGAGAGAATCG
AGAAAACATTTCCGTGGTATATTATAACGATCATTTTATGTTGTATAATC
GAGATTGTTGAATCCATTTTTGGTCTCAGTGAGCCAGTTATAACTGTACT
ATCAACAGAGAAAACAGTGATTGATCTGAAACACGGAAACAAATGTAGCC
CCTTGACCAGAGCTGACGGTAACAATAATGGATGCAATAAGAAAGCAGAT
GATGAGAAATTGTTATTGGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005991-exon-sc0000062-1491911889:59999..60246 | TCONS_00005991-exon-sc0000062-1491911889:59999..60246 | Clytia hemisphaerica | exon |
| TCONS_00005991-exon-sc0000062-1510915933:59999..60246 | TCONS_00005991-exon-sc0000062-1510915933:59999..60246 | Clytia hemisphaerica | exon |
| TCONS_00005991-exon-sc0000062-1575043694:59999..60246 | TCONS_00005991-exon-sc0000062-1575043694:59999..60246 | Clytia hemisphaerica | exon |
| TCONS_00005991-exon-sc0000062-1491911889:63248..65095 | TCONS_00005991-exon-sc0000062-1491911889:63248..65095 | Clytia hemisphaerica | exon |
| TCONS_00005991-exon-sc0000062-1510915933:63248..65095 | TCONS_00005991-exon-sc0000062-1510915933:63248..65095 | Clytia hemisphaerica | exon |
| TCONS_00005991-exon-sc0000062-1575043694:63248..65095 | TCONS_00005991-exon-sc0000062-1575043694:63248..65095 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:59999..65095 + |
Blast
The following BLAST results are available for this feature:
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