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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005986 ID=TCONS_00005986|Name=TCONS_00005986|organism=Clytia hemisphaerica|type=transcript|length=1689bp
AAGAGCTCAGTGCTTTGAATTTTGTTGTCAAATTCATGAATATTTTCAGC
TCCGATTGGACGATTCTCAACAGCATGAAGGCGTTTCTGATCAAAGTCTT
TGTTCAATTGAGTATTTGGATACGAATTCTTTGCTGGAGATCCTTGGATA
GAATTACCATCAATAGACGATTGATCCTGGAGAGATTTCTCACATTCTTC
TGAGTGCGTTTCTTCAGTGCGACTGATGAACGACAATGGAGAAGGCTCTA
TAAAGAGATCTCGATCTTTTATTGGTGAACCACAGTCTAAGTCTACCTCT
ATCAAAACTTGCTCTATAATCTTCTTACATAAATCGTTCACATATTCTTC
TTGTTGAGTACTGAAGAATTGGTTTTCATTTTCACCATCATTTAAGAGCA
TTAGTTGTTGGTTATCTTTGAAACCACTTTCAAATCCTTTGtaatcttct
tcttcatcttcaacaAGATCTTCTTCCTTcactttcaaaagttttgagaG
ATTAGAATCTTCGTTTAATTGCTCCAGTCGATCGTTTTGAGATTCCTCAA
ACTCAGATCTTATGCATTCCAAATCTGTCTCACTGAGTATAACTACAGCA
TTTTCATCAATAATTTGAGAAGAATTAAAATTTTCGATCAATTTATTTTT
GGTCATAAACTCTTTATCCAAACCACTTGATCTTGACTCAATATCTTGAT
AATAAGAACTTTCTTGGCTCTCAGTTTCAACATCTTGGTCTTGTGATTTA
GTTTCCAATTCCGATGATAGACCTTGATTTCCAGAAGGGTTTTCGTCAGA
TAAGAGTTGATCATTAGGTGAAATGGAAACATTAGAATCACAAAATCCTA
TCGTATTGTCTTTCTCAGCTACATCGATTTGCCCGAACGaatcttttgaa
acaatgtaACGACTATTTGCAACTCCAGCCACATTCTCAAATTCACCAAT
AGTACTAATAGATTTCACTTCAGCAAACGCCAATACTTCAGATTCGTCCT
CTTCAGCAATGACATAAAGATTCTCAACATCATTACCATAAGAAATAGAA
CCAAACTTTACACATGGTGAATCTAAGTCTTCATCAATATCGATAGCTTC
ATCTTCACAATCATCGAATTGAAACACCGATTCTTCCTCTCCGTTATCGA
AAGCCCAATTTTCAATATCATTACCCAATTGTCCTTTTTCATCTCCTCCA
TATAAAGTCTCTGATTCATCAAAAGCCCAATTCTCAATATCATTATCTAC
ATAACTGGccaattttccttttttatttccTTGTCCTTCAACGGGAATAG
AGCTGTTTTGATCTTCGTCAATTTGACACTTTTCTTCATTCAATCTTCTT
CCCTGTGCATGCATCATGTTTTCAACATCACACTCTTCGCTCACTTTTTC
GGACACTAGCCTATGTTCTTCGTAAATTCGGACACCaatattttcatctt
cttcCAGGCTAACATTAAACAGATATcgactttcactttcactttcgttt
tcctcATACGTTCGTATTTTTGCTACAGTAGGCTTCCGGGTACCTGGTTT
TTCTTCCTCAGTTTCGTTGTGAAAGGTTTTTTCGTTTTCGCCTACCGAGT
AAGCCGCATCAGTCCTTTGGATAATGTTTACGTCATAAAAAGACTCAGCA
ACATCCTTGTTTATTTCTTGCTCAAAGGTCATATCGTCA Run BLAST on NCBI protein sequence of TCONS_00005986-protein >TCONS_00005986-protein ID=TCONS_00005986-protein|Name=TCONS_00005986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=562bp
DDMTFEQEINKDVAESFYDVNIIQRTDAAYSVGENEKTFHNETEEEKPGT
RKPTVAKIRTYEENESESESRYLFNVSLEEDENIGVRIYEEHRLVSEKVS
EECDVENMMHAQGRRLNEEKCQIDEDQNSSIPVEGQGNKKGKLASYVDND
IENWAFDESETLYGGDEKGQLGNDIENWAFDNGEEESVFQFDDCEDEAID
IDEDLDSPCVKFGSISYGNDVENLYVIAEEDESEVLAFAEVKSISTIGEF
ENVAGVANSRYIVSKDSFGQIDVAEKDNTIGFCDSNVSISPNDQLLSDEN
PSGNQGLSSELETKSQDQDVETESQESSYYQDIESRSSGLDKEFMTKNKL
IENFNSSQIIDENAVVILSETDLECIRSEFEESQNDRLEQLNEDSNLSKL
LKVKEEDLVEDEEEDYKGFESGFKDNQQLMLLNDGENENQFFSTQQEEYV
NDLCKKIIEQVLIEVDLDCGSPIKDRDLFIEPSPLSFISRTEETHSEECE
KSLQDQSSIDGNSIQGSPAKNSYPNTQLNKDFDQKRLHAVENRPIGAENI
HEFDNKIQSTEL Run BLAST on NCBI transcript from alignment at sc0000061:990614..992302 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005986 ID=TCONS_00005986|Name=TCONS_00005986|organism=Clytia hemisphaerica|type=transcript|length=1689bp|location=Sequence derived from alignment at sc0000061:990614..992302 (Clytia hemisphaerica)
TGACGATATGACCTTTGAGCAAGAAATAAACAAGGATGTTGCTGAGTCTT
TTTATGACGTAAACATTATCCAAAGGACTGATGCGGCTTACTCGGTAGGC
GAAAACGAAAAAACCTTTCACAACGAAACTGAGGAAGAAAAACCAGGTAC
CCGGAAGCCTACTGTAGCAAAAATACGAACGTATgaggaaaacgaaagtg
aaagtgaaagtcgATATCTGTTTAATGTTAGCCTGgaagaagatgaaaat
attGGTGTCCGAATTTACGAAGAACATAGGCTAGTGTCCGAAAAAGTGAG
CGAAGAGTGTGATGTTGAAAACATGATGCATGCACAGGGAAGAAGATTGA
ATGAAGAAAAGTGTCAAATTGACGAAGATCAAAACAGCTCTATTCCCGTT
GAAGGACAAggaaataaaaaaggaaaattggCCAGTTATGTAGATAATGA
TATTGAGAATTGGGCTTTTGATGAATCAGAGACTTTATATGGAGGAGATG
AAAAAGGACAATTGGGTAATGATATTGAAAATTGGGCTTTCGATAACGGA
GAGGAAGAATCGGTGTTTCAATTCGATGATTGTGAAGATGAAGCTATCGA
TATTGATGAAGACTTAGATTCACCATGTGTAAAGTTTGGTTCTATTTCTT
ATGGTAATGATGTTGAGAATCTTTATGTCATTGCTGAAGAGGACGAATCT
GAAGTATTGGCGTTTGCTGAAGTGAAATCTATTAGTACTATTGGTGAATT
TGAGAATGTGGCTGGAGTTGCAAATAGTCGTtacattgtttcaaaagatt
CGTTCGGGCAAATCGATGTAGCTGAGAAAGACAATACGATAGGATTTTGT
GATTCTAATGTTTCCATTTCACCTAATGATCAACTCTTATCTGACGAAAA
CCCTTCTGGAAATCAAGGTCTATCATCGGAATTGGAAACTAAATCACAAG
ACCAAGATGTTGAAACTGAGAGCCAAGAAAGTTCTTATTATCAAGATATT
GAGTCAAGATCAAGTGGTTTGGATAAAGAGTTTATGACCAAAAATAAATT
GATCGAAAATTTTAATTCTTCTCAAATTATTGATGAAAATGCTGTAGTTA
TACTCAGTGAGACAGATTTGGAATGCATAAGATCTGAGTTTGAGGAATCT
CAAAACGATCGACTGGAGCAATTAAACGAAGATTCTAATCtctcaaaact
tttgaaagtgAAGGAAGAAGATCTtgttgaagatgaagaagaagattaCA
AAGGATTTGAAAGTGGTTTCAAAGATAACCAACAACTAATGCTCTTAAAT
GATGGTGAAAATGAAAACCAATTCTTCAGTACTCAACAAGAAGAATATGT
GAACGATTTATGTAAGAAGATTATAGAGCAAGTTTTGATAGAGGTAGACT
TAGACTGTGGTTCACCAATAAAAGATCGAGATCTCTTTATAGAGCCTTCT
CCATTGTCGTTCATCAGTCGCACTGAAGAAACGCACTCAGAAGAATGTGA
GAAATCTCTCCAGGATCAATCGTCTATTGATGGTAATTCTATCCAAGGAT
CTCCAGCAAAGAATTCGTATCCAAATACTCAATTGAACAAAGACTTTGAT
CAGAAACGCCTTCATGCTGTTGAGAATCGTCCAATCGGAGCTGAAAATAT
TCATGAATTTGACAACAAAATTCAAAGCACTGAGCTCTT Coding sequence (CDS) from alignment at sc0000061:990614..992302 >TCONS_00005986 ID=TCONS_00005986|Name=TCONS_00005986|organism=Clytia hemisphaerica|type=CDS|length=1686bp|location=Sequence derived from alignment at sc0000061:990614..992302 (Clytia hemisphaerica)
GACGATATGACCTTTGAGCAAGAAATAAACAAGGATGTTGCTGAGTCTTT
TTATGACGTAAACATTATCCAAAGGACTGATGCGGCTTACTCGGTAGGCG
AAAACGAAAAAACCTTTCACAACGAAACTGAGGAAGAAAAACCAGGTACC
CGGAAGCCTACTGTAGCAAAAATACGAACGTATgaggaaaacgaaagtga
aagtgaaagtcgATATCTGTTTAATGTTAGCCTGgaagaagatgaaaata
ttGGTGTCCGAATTTACGAAGAACATAGGCTAGTGTCCGAAAAAGTGAGC
GAAGAGTGTGATGTTGAAAACATGATGCATGCACAGGGAAGAAGATTGAA
TGAAGAAAAGTGTCAAATTGACGAAGATCAAAACAGCTCTATTCCCGTTG
AAGGACAAggaaataaaaaaggaaaattggCCAGTTATGTAGATAATGAT
ATTGAGAATTGGGCTTTTGATGAATCAGAGACTTTATATGGAGGAGATGA
AAAAGGACAATTGGGTAATGATATTGAAAATTGGGCTTTCGATAACGGAG
AGGAAGAATCGGTGTTTCAATTCGATGATTGTGAAGATGAAGCTATCGAT
ATTGATGAAGACTTAGATTCACCATGTGTAAAGTTTGGTTCTATTTCTTA
TGGTAATGATGTTGAGAATCTTTATGTCATTGCTGAAGAGGACGAATCTG
AAGTATTGGCGTTTGCTGAAGTGAAATCTATTAGTACTATTGGTGAATTT
GAGAATGTGGCTGGAGTTGCAAATAGTCGTtacattgtttcaaaagattC
GTTCGGGCAAATCGATGTAGCTGAGAAAGACAATACGATAGGATTTTGTG
ATTCTAATGTTTCCATTTCACCTAATGATCAACTCTTATCTGACGAAAAC
CCTTCTGGAAATCAAGGTCTATCATCGGAATTGGAAACTAAATCACAAGA
CCAAGATGTTGAAACTGAGAGCCAAGAAAGTTCTTATTATCAAGATATTG
AGTCAAGATCAAGTGGTTTGGATAAAGAGTTTATGACCAAAAATAAATTG
ATCGAAAATTTTAATTCTTCTCAAATTATTGATGAAAATGCTGTAGTTAT
ACTCAGTGAGACAGATTTGGAATGCATAAGATCTGAGTTTGAGGAATCTC
AAAACGATCGACTGGAGCAATTAAACGAAGATTCTAATCtctcaaaactt
ttgaaagtgAAGGAAGAAGATCTtgttgaagatgaagaagaagattaCAA
AGGATTTGAAAGTGGTTTCAAAGATAACCAACAACTAATGCTCTTAAATG
ATGGTGAAAATGAAAACCAATTCTTCAGTACTCAACAAGAAGAATATGTG
AACGATTTATGTAAGAAGATTATAGAGCAAGTTTTGATAGAGGTAGACTT
AGACTGTGGTTCACCAATAAAAGATCGAGATCTCTTTATAGAGCCTTCTC
CATTGTCGTTCATCAGTCGCACTGAAGAAACGCACTCAGAAGAATGTGAG
AAATCTCTCCAGGATCAATCGTCTATTGATGGTAATTCTATCCAAGGATC
TCCAGCAAAGAATTCGTATCCAAATACTCAATTGAACAAAGACTTTGATC
AGAAACGCCTTCATGCTGTTGAGAATCGTCCAATCGGAGCTGAAAATATT
CATGAATTTGACAACAAAATTCAAAGCACTGAGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005986-exon-sc0000061-1491911889:990614..992302 | TCONS_00005986-exon-sc0000061-1491911889:990614..992302 | Clytia hemisphaerica | exon |
| TCONS_00005986-exon-sc0000061-1510915933:990614..992302 | TCONS_00005986-exon-sc0000061-1510915933:990614..992302 | Clytia hemisphaerica | exon |
| TCONS_00005986-exon-sc0000061-1575043694:990614..992302 | TCONS_00005986-exon-sc0000061-1575043694:990614..992302 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:990614..992302 . |
Blast
The following BLAST results are available for this feature:
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