TCONS_00005983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005983
Unique NameTCONS_00005983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005983 ID=TCONS_00005983|Name=TCONS_00005983|organism=Clytia hemisphaerica|type=transcript|length=238bp
tgCAAATCAACATGGATTTCGCTCTGGCAGATCATGCCTCAGTCAACTTT
TGTCACACTACGATGAGATTTTATCTCTACTCGAGCAAGGCCAGAATGCA
GATGTTGTCTACCTTGATTTTTCCAAAGCATTCGACAAAGTGGACTTAAA
CCTCGCTCTTACCAAAGTTCAAAATCTTGGTATTGGTGGAAAAGTCTTGA
AATGGTTACAATCGTTTTTAACCAATCGCTATCAAACC
Run BLAST on NCBI

transcript from alignment at sc0000061:873979..874216

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005983 ID=TCONS_00005983|Name=TCONS_00005983|organism=Clytia hemisphaerica|type=transcript|length=238bp|location=Sequence derived from alignment at sc0000061:873979..874216 (Clytia hemisphaerica)
GGTTTGATAGCGATTGGTTAAAAACGATTGTAACCATTTCAAGACTTTTC
CACCAATACCAAGATTTTGAACTTTGGTAAGAGCGAGGTTTAAGTCCACT
TTGTCGAATGCTTTGGAAAAATCAAGGTAGACAACATCTGCATTCTGGCC
TTGCTCGAGTAGAGATAAAATCTCATCGTAGTGTGACAAAAGTTGACTGA
GGCATGATCTGCCAGAGCGAAATCCATGTTGATTTGca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003416XLOC_003416Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005983-exon-sc0000061-1491911889:873979..874216TCONS_00005983-exon-sc0000061-1491911889:873979..874216Clytia hemisphaericaexon
TCONS_00005983-exon-sc0000061-1510915933:873979..874216TCONS_00005983-exon-sc0000061-1510915933:873979..874216Clytia hemisphaericaexon
TCONS_00005983-exon-sc0000061-1575043694:873979..874216TCONS_00005983-exon-sc0000061-1575043694:873979..874216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:873979..874216 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.64436	3.67373	3.75187	4.84102	3.7579	1.9797	5.1471	5.32632	0	2.90866	0	3.09311	0	1.92466	0.527444	6.74827	1.76393	6.21538	1.97482	3.96382	7.47495	4.98077	0	2.90479	0	4.11989	3.63441	4.76095	1.75888	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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