TCONS_00005980 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005980
Unique NameTCONS_00005980
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005980 ID=TCONS_00005980|Name=TCONS_00005980|organism=Clytia hemisphaerica|type=transcript|length=1839bp
ggaaaaGTGGAGAACGACATTCAGCACAGTTGGGAGGACTCTGGCCACGA
CATCAATCATCTTCCAAGACTACCACCAATGGTTGGAGGAGACGTCGACG
TGATGATAGGTATACGTTATCTTCGTTTCTTTCCTAAATTCATCCACCAG
TTACCTTCTGGCTTGACCATCTACCAATCACAATTCAAGAACATCGATGG
ATCTTATGGGGTGATCGGTGGTCCCCATGAGGTATTCACAAGTATCGAAA
ATCATCATCACTCAACTTNAGACATTCGATTACTTGGATCAGCTACCTTC
AGTGAGGTTCGACATGACTTGTATTTCACTAACAACCCAACTTACCAAAT
CAACAACGACGAATCTGAACCATCAACTTCATACATCACCAATCTTAATG
AGAAGTTCGAATCAGTTGGTACAGACCTTAACTATCGCTGTGTCAATTGT
CGAAAGTGTTTAACCTGTAAGAACCATTCTACAGAAGATTCCATTAGCAT
CCAAGAGGAGGTCGAGCAAGACTTGATTAATCGCTCCATCACTATCGACC
CATCCAATTGTTCATCGATTGCTAATCTTCCACTAATACACGACCCTCTG
GTCAAACTGGCACCAAATCGAGACATTGCACTTCGCGTTTACATACAACA
GCTTAAACGTTTGGAAAAGCATCAAGACGATAAGGACGGCATCCTCATCT
CAGAGAAGAAACTGCAACACCTGGGATTCGTCGAATATGTCAAGAATTTG
CCCACTGACATCCAAAAGCAACtatgtcggtgttttttacacttttggca
aaaacgtgaagtttttttaaacaggttttaaaataaatacaaaatgcaTG
GGAAGGCTACACAACGAATGCTAGATCTTCAATCGACATCATTCTGTGTC
CCAATCTTGGAGAAGTCATCACCAATCGCCTACAGCATCGTCAACGACAT
CCATTGGAACCACATCACTGCTTCACATTCTGGTGTGGAGACCACTTGGA
GATATGTTCTTCAGAAAGTTTTCATCATCGAAGGAAGGAGTCTGGTCAAG
TCAATTCGATCAAATTGTGAAAGGTGTCGATACCTTCTCAAGAAAACCAT
CGACGTATCAACGGGACCAGTATCACCTGACAACCTGATGATTGCTCCAA
TCTTCTACGTATCTCAAGTCGATTTGTGTGGTCCATTTGAATCATACTCG
TATCACAACAAGAGGGCCACTGTCAAGATCTGGTACGCCGTCTTCTGCTG
TGCTACTACCACCACCATCAGCATCAAATGCATGGAGGATTACTCGACAA
ACGCATTCCTACAAGCATTCACTCGACTATCGTGCGAAGTTGGGTATCCA
CGTCGACTGCTCACTGATGAGGGCAGCCAACTCGNCACCATCAGCATCAA
ATGCATGGAGGATTACTCGACAAACGCATTCCTACAAGCATTCACTCGAC
TATCGTGCGAAGTTGGGTATCCACGTCGACTGCTCACTGATGAGGGCAGT
CAACTCGTCAAGGCTTGCGAAACACTTCAAATTGATTTCCAAGACATCCA
ACGTCGTCTCTTCAAAGAATCCAATGTCGATTTCAACACTTGTCCAGTTG
GAGGCCACAATATGAATGGTCTCGTAGAACGAAAAATTCGTGAAGTCAAG
AAGTCCATCCAAAAATCAGTCTCCAATCAACGACTATCAATCATGCAATG
GGAGACATTCGCATCTCGAGCAGCAAACAGCATCAATGATCTACCATTAG
GCATTCGTGACTACGATGGAGACTTGCAATCATTGGATATCATCACACCA
AATAGACTGAGACTTGGACGAAACAACGACAGAAGCCNN
Run BLAST on NCBI

protein sequence of TCONS_00005980-protein

>TCONS_00005980-protein ID=TCONS_00005980-protein|Name=TCONS_00005980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MHGKATQRMLDLQSTSFCVPILEKSSPIAYSIVNDIHWNHITASHSGVET
TWRYVLQKVFIIEGRSLVKSIRSNCERCRYLLKKTIDVSTGPVSPDNLMI
APIFYVSQVDLCGPFESYSYHNKRATVKIWYAVFCCATTTTISIKCMEDY
STNAFLQAFTRLSCEVGYPRRLLTDEGSQLXTISIKCMEDYSTNAFLQAF
TRLSCEVGYPRRLLTDEGSQLVKACETLQIDFQDIQRRLFKESNVDFNTC
PVGGHNMNGLVERKIREVKKSIQKSVSNQRLSIMQWETFASRAANSINDL
PLGIRDYDGDLQSLDIITPNRLRLGRNNDRSX
Run BLAST on NCBI

transcript from alignment at sc0000061:810308..812146

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005980 ID=TCONS_00005980|Name=TCONS_00005980|organism=Clytia hemisphaerica|type=transcript|length=1839bp|location=Sequence derived from alignment at sc0000061:810308..812146 (Clytia hemisphaerica)
NNGGCTTCTGTCGTTGTTTCGTCCAAGTCTCAGTCTATTTGGTGTGATGA TATCCAATGATTGCAAGTCTCCATCGTAGTCACGAATGCCTAATGGTAGA TCATTGATGCTGTTTGCTGCTCGAGATGCGAATGTCTCCCATTGCATGAT TGATAGTCGTTGATTGGAGACTGATTTTTGGATGGACTTCTTGACTTCAC GAATTTTTCGTTCTACGAGACCATTCATATTGTGGCCTCCAACTGGACAA GTGTTGAAATCGACATTGGATTCTTTGAAGAGACGACGTTGGATGTCTTG GAAATCAATTTGAAGTGTTTCGCAAGCCTTGACGAGTTGACTGCCCTCAT CAGTGAGCAGTCGACGTGGATACCCAACTTCGCACGATAGTCGAGTGAAT GCTTGTAGGAATGCGTTTGTCGAGTAATCCTCCATGCATTTGATGCTGAT GGTGNCGAGTTGGCTGCCCTCATCAGTGAGCAGTCGACGTGGATACCCAA CTTCGCACGATAGTCGAGTGAATGCTTGTAGGAATGCGTTTGTCGAGTAA TCCTCCATGCATTTGATGCTGATGGTGGTGGTAGTAGCACAGCAGAAGAC GGCGTACCAGATCTTGACAGTGGCCCTCTTGTTGTGATACGAGTATGATT CAAATGGACCACACAAATCGACTTGAGATACGTAGAAGATTGGAGCAATC ATCAGGTTGTCAGGTGATACTGGTCCCGTTGATACGTCGATGGTTTTCTT GAGAAGGTATCGACACCTTTCACAATTTGATCGAATTGACTTGACCAGAC TCCTTCCTTCGATGATGAAAACTTTCTGAAGAACATATCTCCAAGTGGTC TCCACACCAGAATGTGAAGCAGTGATGTGGTTCCAATGGATGTCGTTGAC GATGCTGTAGGCGATTGGTGATGACTTCTCCAAGATTGGGACACAGAATG ATGTCGATTGAAGATCTAGCATTCGTTGTGTAGCCTTCCCAtgcattttg tatttattttaaaacctgtttaaaaaaacttcacgtttttgccaaaagtg taaaaaacaccgacataGTTGCTTTTGGATGTCAGTGGGCAAATTCTTGA CATATTCGACGAATCCCAGGTGTTGCAGTTTCTTCTCTGAGATGAGGATG CCGTCCTTATCGTCTTGATGCTTTTCCAAACGTTTAAGCTGTTGTATGTA AACGCGAAGTGCAATGTCTCGATTTGGTGCCAGTTTGACCAGAGGGTCGT GTATTAGTGGAAGATTAGCAATCGATGAACAATTGGATGGGTCGATAGTG ATGGAGCGATTAATCAAGTCTTGCTCGACCTCCTCTTGGATGCTAATGGA ATCTTCTGTAGAATGGTTCTTACAGGTTAAACACTTTCGACAATTGACAC AGCGATAGTTAAGGTCTGTACCAACTGATTCGAACTTCTCATTAAGATTG GTGATGTATGAAGTTGATGGTTCAGATTCGTCGTTGTTGATTTGGTAAGT TGGGTTGTTAGTGAAATACAAGTCATGTCGAACCTCACTGAAGGTAGCTG ATCCAAGTAATCGAATGTCTNAAGTTGAGTGATGATGATTTTCGATACTT GTGAATACCTCATGGGGACCACCGATCACCCCATAAGATCCATCGATGTT CTTGAATTGTGATTGGTAGATGGTCAAGCCAGAAGGTAACTGGTGGATGA ATTTAGGAAAGAAACGAAGATAACGTATACCTATCATCACGTCGACGTCT CCTCCAACCATTGGTGGTAGTCTTGGAAGATGATTGATGTCGTGGCCAGA GTCCTCCCAACTGTGCTGAATGTCGTTCTCCACttttcc

Coding sequence (CDS) from alignment at sc0000061:810308..812146

>TCONS_00005980 ID=TCONS_00005980|Name=TCONS_00005980|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000061:810308..812146 (Clytia hemisphaerica)
NNGGCTTCTGTCGTTGTTTCGTCCAAGTCTCAGTCTATTTGGTGTGATGA
TATCCAATGATTGCAAGTCTCCATCGTAGTCACGAATGCCTAATGGTAGA
TCATTGATGCTGTTTGCTGCTCGAGATGCGAATGTCTCCCATTGCATGAT
TGATAGTCGTTGATTGGAGACTGATTTTTGGATGGACTTCTTGACTTCAC
GAATTTTTCGTTCTACGAGACCATTCATATTGTGGCCTCCAACTGGACAA
GTGTTGAAATCGACATTGGATTCTTTGAAGAGACGACGTTGGATGTCTTG
GAAATCAATTTGAAGTGTTTCGCAAGCCTTGACGAGTTGACTGCCCTCAT
CAGTGAGCAGTCGACGTGGATACCCAACTTCGCACGATAGTCGAGTGAAT
GCTTGTAGGAATGCGTTTGTCGAGTAATCCTCCATGCATTTGATGCTGAT
GGTGNCGAGTTGGCTGCCCTCATCAGTGAGCAGTCGACGTGGATACCCAA
CTTCGCACGATAGTCGAGTGAATGCTTGTAGGAATGCGTTTGTCGAGTAA
TCCTCCATGCATTTGATGCTGATGGTGGTGGTAGTAGCACAGCAGAAGAC
GGCGTACCAGATCTTGACAGTGGCCCTCTTGTTGTGATACGAGTATGATT
CAAATGGACCACACAAATCGACTTGAGATACGTAGAAGATTGGAGCAATC
ATCAGGTTGTCAGGTGATACTGGTCCCGTTGATACGTCGATGGTTTTCTT
GAGAAGGTATCGACACCTTTCACAATTTGATCGAATTGACTTGACCAGAC
TCCTTCCTTCGATGATGAAAACTTTCTGAAGAACATATCTCCAAGTGGTC
TCCACACCAGAATGTGAAGCAGTGATGTGGTTCCAATGGATGTCGTTGAC
GATGCTGTAGGCGATTGGTGATGACTTCTCCAAGATTGGGACACAGAATG
ATGTCGATTGAAGATCTAGCATTCGTTGTGTAGCCTTCCCAtgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003413XLOC_003413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005980-exon-sc0000061-1491911889:810308..812146TCONS_00005980-exon-sc0000061-1491911889:810308..812146Clytia hemisphaericaexon
TCONS_00005980-exon-sc0000061-1510915933:810308..812146TCONS_00005980-exon-sc0000061-1510915933:810308..812146Clytia hemisphaericaexon
TCONS_00005980-exon-sc0000061-1575043694:810308..812146TCONS_00005980-exon-sc0000061-1575043694:810308..812146Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005980-proteinTCONS_00005980-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:810308..812146 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58017 1.3876 1.2815 0.925673 0.491675 0.274993 1.14927 2.00278 0.659076 1.1802 0.835818 1.8016 2.02658 1.57846 0.133976 0.265265 0.248282 0.378341 0.208235 0.387383 0.379626 0.512789 0.283895 0.280546 1.6358 0.956441 2.60847 1.60189 0.438951 0.312622
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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