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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005976 ID=TCONS_00005976|Name=TCONS_00005976|organism=Clytia hemisphaerica|type=transcript|length=1544bp
ctctttttgttttattcaacgacatttgaaaaaattacaattttagACTA
TCTAAACTAAAATTCCTTTCATCAATACCACCCAGACAAGAATCACCAGT
CGAATTTATGGATTTCTGACCAAGAACATCAGTAATATCTGAAGTCCATT
CAGATAGAGCATacatattcttaacatgttctgaGTCAAAATCAAATGCT
AATTGACTTTCGTGAACTAAAGAACTTTTCcttaattgtttttttagatT
CACCAAGTTCGGTACTTGGAGATCTGaagatgattttgatgaaatttgtg
gAGAATTATTGTTACTTTGTCTCTGGATGTCGTATATTTTTGTTGAAGTA
CGTTGAGTGTTTTGGctaatattttgaataattgtTGTTGGATTGTTATG
TATTATTGAAGGACTTGATGTTAAACCAAGGATAAAATTATAAATTGAAT
CTTGAGGTATGAAATCTTTTGGAGTTGATTTGGTAGAACTTGGAGTTGAG
TttgaaatgtttcttttttcattttcttctaagTTATTTATGACTGTAGC
TTCTTTTTCACTCATATCATTAATATTATCTCGGTCATTTTCGGACGAGG
GTTGATTCATTTGTGAAGTAAATTGTAAATTATTATCCGAGGAAGATCTA
AGTTGATTTCCCAATCCCCAATCTAGAATTATGTCTGTATCACCTATCTC
ATCAATATTATCTCCGCCATTTAATGATAATGGTCGATTCTTTTGTGATA
TAAGTTCTGAATGGATATCTCCGGAATAACAGACTTGATTATCCCACCCC
GCTTCTTGAGTTTTGTTTGCATCGTTTATCTCATCAATTGATAACGAGGG
TTCATTCGATTGTGAAATAAATTCCGAATCGTTGTCTCCGTAAGAACTAA
CTTGATTATCCAATGTGATTTTAACgtcagaaaaagaagaaactttaTCA
ATAGATATTGTACTTGCATGTAATATAACATCGTCTTTTATTAAATTACT
ACCGAACGTTTTAGTCATGAAGTGTTCATTTTCCAGACTCGTACTTTCCA
ATATTAGTCCCTTAGGGATCTGATTCTCAGAATCAAAAACTTCTTCTTTA
AATCTAGCAAATCCGTCAAAGTTTCCATTAATATCCATCGCTTTCAAATC
TCCTTGTGAATTATCCCATTTTATAGTCTGTTGAACCCCTTGTATCATAT
CCTTTTCAGGGTCTGCGAGATTTGTTAGAAGACAAGTGGTATCATTGTCG
ATTCTAGTCTGTTGTCGTCCTTTTATCTTGTGATTTTGTTGTTGCGCATG
GTCTGCATCAACATTGTAAAAAAGTTCATCCTGTtttgatcctgttttgt
attcatagTCTTCCATTTTGACAGTGCTTTGGCATCTGAAATTTGATTGA
CCTTTTATCTGCTTGTTAAATATCTATAATGTCAAAAAACTGAACTTAGT
TAATAACACTTAGTAGGAAAGAGGACAGGAATGTTCAATATGAAATACGA
ATGATTCTCTTCTTTTCTTATCTGACCGTCTTTCGCTTTCCTTC Run BLAST on NCBI protein sequence of TCONS_00005976-protein >TCONS_00005976-protein ID=TCONS_00005976-protein|Name=TCONS_00005976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
MEDYEYKTGSKQDELFYNVDADHAQQQNHKIKGRQQTRIDNDTTCLLTNL
ADPEKDMIQGVQQTIKWDNSQGDLKAMDINGNFDGFARFKEEVFDSENQI
PKGLILESTSLENEHFMTKTFGSNLIKDDVILHASTISIDKVSSFSDVKI
TLDNQVSSYGDNDSEFISQSNEPSLSIDEINDANKTQEAGWDNQVCYSGD
IHSELISQKNRPLSLNGGDNIDEIGDTDIILDWGLGNQLRSSSDNNLQFT
SQMNQPSSENDRDNINDMSEKEATVINNLEENEKRNISNSTPSSTKSTPK
DFIPQDSIYNFILGLTSSPSIIHNNPTTIIQNISQNTQRTSTKIYDIQRQ
SNNNSPQISSKSSSDLQVPNLVNLKKQLRKSSLVHESQLAFDFDSEHVKN
MYALSEWTSDITDVLGQKSINSTGDSCLGGIDERNFSLDSLKL Run BLAST on NCBI transcript from alignment at sc0000061:707339..708882 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005976 ID=TCONS_00005976|Name=TCONS_00005976|organism=Clytia hemisphaerica|type=transcript|length=1544bp|location=Sequence derived from alignment at sc0000061:707339..708882 (Clytia hemisphaerica)
GAAGGAAAGCGAAAGACGGTCAGATAAGAAAAGAAGAGAATCATTCGTAT
TTCATATTGAACATTCCTGTCCTCTTTCCTACTAAGTGTTATTAACTAAG
TTCAGTTTTTTGACATTATAGATATTTAACAAGCAGATAAAAGGTCAATC
AAATTTCAGATGCCAAAGCACTGTCAAAATGGAAGActatgaatacaaaa
caggatcaaaACAGGATGAACTTTTTTACAATGTTGATGCAGACCATGCG
CAACAACAAAATCACAAGATAAAAGGACGACAACAGACTAGAATCGACAA
TGATACCACTTGTCTTCTAACAAATCTCGCAGACCCTGAAAAGGATATGA
TACAAGGGGTTCAACAGACTATAAAATGGGATAATTCACAAGGAGATTTG
AAAGCGATGGATATTAATGGAAACTTTGACGGATTTGCTAGATTTAAAGA
AGAAGTTTTTGATTCTGAGAATCAGATCCCTAAGGGACTAATATTGGAAA
GTACGAGTCTGGAAAATGAACACTTCATGACTAAAACGTTCGGTAGTAAT
TTAATAAAAGACGATGTTATATTACATGCAAGTACAATATCTATTGAtaa
agtttcttctttttctgacGTTAAAATCACATTGGATAATCAAGTTAGTT
CTTACGGAGACAACGATTCGGAATTTATTTCACAATCGAATGAACCCTCG
TTATCAATTGATGAGATAAACGATGCAAACAAAACTCAAGAAGCGGGGTG
GGATAATCAAGTCTGTTATTCCGGAGATATCCATTCAGAACTTATATCAC
AAAAGAATCGACCATTATCATTAAATGGCGGAGATAATATTGATGAGATA
GGTGATACAGACATAATTCTAGATTGGGGATTGGGAAATCAACTTAGATC
TTCCTCGGATAATAATTTACAATTTACTTCACAAATGAATCAACCCTCGT
CCGAAAATGACCGAGATAATATTAATGATATGAGTGAAAAAGAAGCTACA
GTCATAAATAActtagaagaaaatgaaaaaagaaacatttcaaACTCAAC
TCCAAGTTCTACCAAATCAACTCCAAAAGATTTCATACCTCAAGATTCAA
TTTATAATTTTATCCTTGGTTTAACATCAAGTCCTTCAATAATACATAAC
AATCCAACAacaattattcaaaatattagCCAAAACACTCAACGTACTTC
AACAAAAATATACGACATCCAGAGACAAAGTAACAATAATTCTccacaaa
tttcatcaaaatcatcttCAGATCTCCAAGTACCGAACTTGGTGAatcta
aaaaaacaattaagGAAAAGTTCTTTAGTTCACGAAAGTCAATTAGCATT
TGATTTTGACtcagaacatgttaagaatatgtATGCTCTATCTGAATGGA
CTTCAGATATTACTGATGTTCTTGGTCAGAAATCCATAAATTCGACTGGT
GATTCTTGTCTGGGTGGTATTGATGAAAGGAATTTTAGTTTAGATAGTct
aaaattgtaattttttcaaatgtcgttgaataaaacaaaaagag Coding sequence (CDS) from alignment at sc0000061:707339..708882 >TCONS_00005976 ID=TCONS_00005976|Name=TCONS_00005976|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at sc0000061:707339..708882 (Clytia hemisphaerica)
ATGGAAGActatgaatacaaaacaggatcaaaACAGGATGAACTTTTTTA
CAATGTTGATGCAGACCATGCGCAACAACAAAATCACAAGATAAAAGGAC
GACAACAGACTAGAATCGACAATGATACCACTTGTCTTCTAACAAATCTC
GCAGACCCTGAAAAGGATATGATACAAGGGGTTCAACAGACTATAAAATG
GGATAATTCACAAGGAGATTTGAAAGCGATGGATATTAATGGAAACTTTG
ACGGATTTGCTAGATTTAAAGAAGAAGTTTTTGATTCTGAGAATCAGATC
CCTAAGGGACTAATATTGGAAAGTACGAGTCTGGAAAATGAACACTTCAT
GACTAAAACGTTCGGTAGTAATTTAATAAAAGACGATGTTATATTACATG
CAAGTACAATATCTATTGAtaaagtttcttctttttctgacGTTAAAATC
ACATTGGATAATCAAGTTAGTTCTTACGGAGACAACGATTCGGAATTTAT
TTCACAATCGAATGAACCCTCGTTATCAATTGATGAGATAAACGATGCAA
ACAAAACTCAAGAAGCGGGGTGGGATAATCAAGTCTGTTATTCCGGAGAT
ATCCATTCAGAACTTATATCACAAAAGAATCGACCATTATCATTAAATGG
CGGAGATAATATTGATGAGATAGGTGATACAGACATAATTCTAGATTGGG
GATTGGGAAATCAACTTAGATCTTCCTCGGATAATAATTTACAATTTACT
TCACAAATGAATCAACCCTCGTCCGAAAATGACCGAGATAATATTAATGA
TATGAGTGAAAAAGAAGCTACAGTCATAAATAActtagaagaaaatgaaa
aaagaaacatttcaaACTCAACTCCAAGTTCTACCAAATCAACTCCAAAA
GATTTCATACCTCAAGATTCAATTTATAATTTTATCCTTGGTTTAACATC
AAGTCCTTCAATAATACATAACAATCCAACAacaattattcaaaatatta
gCCAAAACACTCAACGTACTTCAACAAAAATATACGACATCCAGAGACAA
AGTAACAATAATTCTccacaaatttcatcaaaatcatcttCAGATCTCCA
AGTACCGAACTTGGTGAatctaaaaaaacaattaagGAAAAGTTCTTTAG
TTCACGAAAGTCAATTAGCATTTGATTTTGACtcagaacatgttaagaat
atgtATGCTCTATCTGAATGGACTTCAGATATTACTGATGTTCTTGGTCA
GAAATCCATAAATTCGACTGGTGATTCTTGTCTGGGTGGTATTGATGAAA
GGAATTTTAGTTTAGATAGTctaaaattgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005976-exon-sc0000061-1491911889:707339..708882 | TCONS_00005976-exon-sc0000061-1491911889:707339..708882 | Clytia hemisphaerica | exon |
| TCONS_00005976-exon-sc0000061-1510915933:707339..708882 | TCONS_00005976-exon-sc0000061-1510915933:707339..708882 | Clytia hemisphaerica | exon |
| TCONS_00005976-exon-sc0000061-1575043694:707339..708882 | TCONS_00005976-exon-sc0000061-1575043694:707339..708882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:707339..708882 . |
Blast
The following BLAST results are available for this feature:
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