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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005968 ID=TCONS_00005968|Name=TCONS_00005968|organism=Clytia hemisphaerica|type=transcript|length=1128bp
ccgagatatacacaaaagaactccagcgtggtagattctacccccctggg
gctaatagggttaaagagTAGCAATATTTCCCTTTAGGTGTGATATGGTG
TAGCATactcaattttgaaataatggAGTTGAGAAAGATTTGAAGGCTAA
TCTTATGTACTAATCtgataaaaaaatctaaaaatttttatGAACATTTT
AATTAATCTATATATAAAGAATGTAAAACACTGGTTTTAAAAGCTCTAGC
AGAATGTAAATAAGATTAATCGCTTATCGACTTTGCGAAAATATTCTATA
GCTTGTATTCCGCCGTTGTGTTACTCGCGGTAgcaaaaactttcctaatt
tcaCACTGTAGaacttaaaactgaaaatttaatggttctTATATAAATAA
ACTTGGAAGTATATAACAACATAAGATGAACTTAACAAAATTATGCTAAG
ATATACAAAAGTTCAAAGGCATAACCCATTCTAGTCAAATTTATGGTTAA
CACAGTATCTATTTCTAAACTTCTTGTTTCGTACCAAGAAAACCAGAGCA
GTTAACAAACACAGTACGGATAACGATGGATAAACTTCAGAACTGATTCC
ATAGAAGAACGAAGcaacaaaatatccaaaacAACAGGCTAGCTTCATGA
TACCTTGACGTATACCCATAACAAAACATCTAGAATGTTCAGGAACAACA
AGGGTTAAAATAACCGTTGAAAACATCACTGCACAATAGCCTGGCACTAT
ATTAATACATAATGTGATGAAAACAAGACTATTCTTCACGATTTCTGAAG
GGATGTAATAATTGGCCAACAACATCATATTAGACATATTAAAACTATTA
CCAATTACACAAAACGTTAACAGGAAATATATATCCAAGCCATCGTTGAA
GCGCTGTAAATATCTCAGAAATGTGATTCCAAGAAGAACGGTAGCAACAG
TCAAGATACTTAAATGTTCGATGGTCCAACCAAGTAAATTGACAGCAATA
ATATTGATTACAATCTCAGCTTGAGTGTAGACGAATGATATGAGCATGAT
GGAAAATAAAACTAAATCAATATCTAGATTTGACAAGACCTGACCGAATG
TCAATAGACTTCCTGGATTCTTGTTGGC Run BLAST on NCBI protein sequence of TCONS_00005968-protein >TCONS_00005968-protein ID=TCONS_00005968-protein|Name=TCONS_00005968-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
ANKNPGSLLTFGQVLSNLDIDLVLFSIMLISFVYTQAEIVINIIAVNLLG
WTIEHLSILTVATVLLGITFLRYLQRFNDGLDIYFLLTFCVIGNSFNMSN
MMLLANYYIPSEIVKNSLVFITLCINIVPGYCAVMFSTVILTLVVPEHSR
CFVMGIRQGIMKLACCFGYFVASFFYGISSEVYPSLSVLCLLTALVFLVR
NKKFRNRYCVNHKFD Run BLAST on NCBI transcript from alignment at sc0000061:404731..405858 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005968 ID=TCONS_00005968|Name=TCONS_00005968|organism=Clytia hemisphaerica|type=transcript|length=1128bp|location=Sequence derived from alignment at sc0000061:404731..405858 (Clytia hemisphaerica)
GCCAACAAGAATCCAGGAAGTCTATTGACATTCGGTCAGGTCTTGTCAAA
TCTAGATATTGATTTAGTTTTATTTTCCATCATGCTCATATCATTCGTCT
ACACTCAAGCTGAGATTGTAATCAATATTATTGCTGTCAATTTACTTGGT
TGGACCATCGAACATTTAAGTATCTTGACTGTTGCTACCGTTCTTCTTGG
AATCACATTTCTGAGATATTTACAGCGCTTCAACGATGGCTTGGATATAT
ATTTCCTGTTAACGTTTTGTGTAATTGGTAATAGTTTTAATATGTCTAAT
ATGATGTTGTTGGCCAATTATTACATCCCTTCAGAAATCGTGAAGAATAG
TCTTGTTTTCATCACATTATGTATTAATATAGTGCCAGGCTATTGTGCAG
TGATGTTTTCAACGGTTATTTTAACCCTTGTTGTTCCTGAACATTCTAGA
TGTTTTGTTATGGGTATACGTCAAGGTATCATGAAGCTAGCCTGTTgttt
tggatattttgttgCTTCGTTCTTCTATGGAATCAGTTCTGAAGTTTATC
CATCGTTATCCGTACTGTGTTTGTTAACTGCTCTGGTTTTCTTGGTACGA
AACAAGAAGTTTAGAAATAGATACTGTGTTAACCATAAATTTGACTAGAA
TGGGTTATGCCTTTGAACTTTTGTATATCTTAGCATAATTTTGTTAAGTT
CATCTTATGTTGTTATATACTTCCAAGTTTATTTATATAagaaccattaa
attttcagttttaagttCTACAGTGtgaaattaggaaagtttttgcTACC
GCGAGTAACACAACGGCGGAATACAAGCTATAGAATATTTTCGCAAAGTC
GATAAGCGATTAATCTTATTTACATTCTGCTAGAGCTTTTAAAACCAGTG
TTTTACATTCTTTATATATAGATTAATTAAAATGTTCataaaaattttta
gatttttttatcaGATTAGTACATAAGATTAGCCTTCAAATCTTTCTCAA
CTccattatttcaaaattgagtATGCTACACCATATCACACCTAAAGGGA
AATATTGCTActctttaaccctattagccccaggggggtagaatctacca
cgctggagttcttttgtgtatatctcgg Coding sequence (CDS) from alignment at sc0000061:404731..405858 >TCONS_00005968 ID=TCONS_00005968|Name=TCONS_00005968|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000061:404731..405858 (Clytia hemisphaerica)
GCCAACAAGAATCCAGGAAGTCTATTGACATTCGGTCAGGTCTTGTCAAA
TCTAGATATTGATTTAGTTTTATTTTCCATCATGCTCATATCATTCGTCT
ACACTCAAGCTGAGATTGTAATCAATATTATTGCTGTCAATTTACTTGGT
TGGACCATCGAACATTTAAGTATCTTGACTGTTGCTACCGTTCTTCTTGG
AATCACATTTCTGAGATATTTACAGCGCTTCAACGATGGCTTGGATATAT
ATTTCCTGTTAACGTTTTGTGTAATTGGTAATAGTTTTAATATGTCTAAT
ATGATGTTGTTGGCCAATTATTACATCCCTTCAGAAATCGTGAAGAATAG
TCTTGTTTTCATCACATTATGTATTAATATAGTGCCAGGCTATTGTGCAG
TGATGTTTTCAACGGTTATTTTAACCCTTGTTGTTCCTGAACATTCTAGA
TGTTTTGTTATGGGTATACGTCAAGGTATCATGAAGCTAGCCTGTTgttt
tggatattttgttgCTTCGTTCTTCTATGGAATCAGTTCTGAAGTTTATC
CATCGTTATCCGTACTGTGTTTGTTAACTGCTCTGGTTTTCTTGGTACGA
AACAAGAAGTTTAGAAATAGATACTGTGTTAACCATAAATTTGACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005968-exon-sc0000061-1491911889:404731..405858 | TCONS_00005968-exon-sc0000061-1491911889:404731..405858 | Clytia hemisphaerica | exon |
| TCONS_00005968-exon-sc0000061-1510915933:404731..405858 | TCONS_00005968-exon-sc0000061-1510915933:404731..405858 | Clytia hemisphaerica | exon |
| TCONS_00005968-exon-sc0000061-1575043694:404731..405858 | TCONS_00005968-exon-sc0000061-1575043694:404731..405858 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:404731..405858 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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