TCONS_00005963 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005963
Unique NameTCONS_00005963
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005963 ID=TCONS_00005963|Name=TCONS_00005963|organism=Clytia hemisphaerica|type=transcript|length=515bp
tttcaggatgatttcgaccaaaaagttaagaatatcaatcatgaaatgga
aaaacaacattcttataaaaatgcgtGTAACCAATTTACCCTATAGTCCA
TTTGCTCAAATAAGTANATGCGTGTAAACAATTTACCCTATAGTCCATTT
GCTCAAATAAGTAGGTCTGCGACTGCAGTCGAAAGCGACCTGAAGACTCC
TCTTTCGATAACTATCCACCTGTATTTCTCCACTTTAATATGTTTAGTTG
CTGAGcaccaagcagagaggcatcaagtacgaTTTTTGTACTAAATGCGA
AATCTTTGGTACGACCCTTTGCACTACAGTGTTGACTATTTTTTGCTACC
TACCAACTCTTAAGCGAATAGTCTAAACATCAAATGGTAAGAAAAACGAG
tacacttaaagcgaatgtaCTTTGAAAATAATAAGAACTGGCCGAGCCGA
ACAAACattcacgcttttttttataaaaatggtgtttttcatttcatgat
ggatattcttaactt
Run BLAST on NCBI

transcript from alignment at sc0000061:325767..326281

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005963 ID=TCONS_00005963|Name=TCONS_00005963|organism=Clytia hemisphaerica|type=transcript|length=515bp|location=Sequence derived from alignment at sc0000061:325767..326281 (Clytia hemisphaerica)
aagttaagaatatccatcatgaaatgaaaaacaccatttttataaaaaaa
agcgtgaatGTTTGTTCGGCTCGGCCAGTTCTTATTATTTTCAAAGtaca
ttcgctttaagtgtaCTCGTTTTTCTTACCATTTGATGTTTAGACTATTC
GCTTAAGAGTTGGTAGGTAGCAAAAAATAGTCAACACTGTAGTGCAAAGG
GTCGTACCAAAGATTTCGCATTTAGTACAAAAAtcgtacttgatgcctct
ctgcttggtgCTCAGCAACTAAACATATTAAAGTGGAGAAATACAGGTGG
ATAGTTATCGAAAGAGGAGTCTTCAGGTCGCTTTCGACTGCAGTCGCAGA
CCTACTTATTTGAGCAAATGGACTATAGGGTAAATTGTTTACACGCATNT
ACTTATTTGAGCAAATGGACTATAGGGTAAATTGGTTACacgcattttta
taagaatgttgtttttccatttcatgattgatattcttaactttttggtc
gaaatcatcctgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003396XLOC_003396Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005963-exon-sc0000061-1491911889:325767..326281TCONS_00005963-exon-sc0000061-1491911889:325767..326281Clytia hemisphaericaexon
TCONS_00005963-exon-sc0000061-1510915933:325767..326281TCONS_00005963-exon-sc0000061-1510915933:325767..326281Clytia hemisphaericaexon
TCONS_00005963-exon-sc0000061-1575043694:325767..326281TCONS_00005963-exon-sc0000061-1575043694:325767..326281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:325767..326281 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.11306	0	0	0.156352	0.123551	0.298119	0.139548	0.195401	0.484072	0	1.38988	0.0771083	0	0.13167	0.0706508	0.087036	0	0	0	0.112098	0	0	0	0.12448	0.111095	0.158977	0.169665	0	0.131109
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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