TCONS_00005962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005962
Unique NameTCONS_00005962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005962 ID=TCONS_00005962|Name=TCONS_00005962|organism=Clytia hemisphaerica|type=transcript|length=752bp
gtccatcTGTCTggaaatcaaaccaaaaaagACCACCGCCACTAACAGGT
CACCAACGAGTAAGCTTTAGAACATGCCAAAAAATAGATTATTATTTGTC
TTCTTGTGTCGATAACTCCCTAAAGTCTTCATTCTCGGCAATTTCAACGT
TAAAATGTCAAGGAAGAGCAATCTGTGGTCTTTAGACAACGAGCTTTGTA
AGTCTTAATCCGCTCAGCACGTACATACCCCAACCAGAGTTGATCTTGTT
TTATCCAGCAGTATTCATATTATGAATGCAAGGTTGCTAAGCTTTGAGTC
AGTGACTATTCCTTAGCTTTCATTAAAAACATTACCAGCTGATTACTTTA
AATAAAAGACTATACGAAAGAAAATGCGAATAGTGAATTCCATCATCATA
ATCTTGATCAAAAAATTGGCAACGAATCGGTGTTTGATAAAATATTAGCG
TTCATTTCGTTAGAGGAGAAAAGGCTTACTTTTTAATTACACGACCTTTC
AAAAGGACCAATCAAGAGTCTTTCGTTGAAGATCTAGGTAATCTTGAtta
atcttttattttcaaaatatggtacCACTCTTCAAATTGATAGTATTGAG
GATTCCATGACCTCAATTGAATTTAGTAACTTGTATCGAATATGAGAAAG
TCAATTGTAAACAAAACCATTAGGGTCATCGATCTTTGAAGGTCTTGGAT
AGGAAATGAGGCAACTTATTTCGCAAAAACGATTgaaagattgaaagtaa
aa
Run BLAST on NCBI

transcript from alignment at sc0000061:324778..325529

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005962 ID=TCONS_00005962|Name=TCONS_00005962|organism=Clytia hemisphaerica|type=transcript|length=752bp|location=Sequence derived from alignment at sc0000061:324778..325529 (Clytia hemisphaerica)
ttttactttcaatctttcAATCGTTTTTGCGAAATAAGTTGCCTCATTTC
CTATCCAAGACCTTCAAAGATCGATGACCCTAATGGTTTTGTTTACAATT
GACTTTCTCATATTCGATACAAGTTACTAAATTCAATTGAGGTCATGGAA
TCCTCAATACTATCAATTTGAAGAGTGgtaccatattttgaaaataaaag
attaaTCAAGATTACCTAGATCTTCAACGAAAGACTCTTGATTGGTCCTT
TTGAAAGGTCGTGTAATTAAAAAGTAAGCCTTTTCTCCTCTAACGAAATG
AACGCTAATATTTTATCAAACACCGATTCGTTGCCAATTTTTTGATCAAG
ATTATGATGATGGAATTCACTATTCGCATTTTCTTTCGTATAGTCTTTTA
TTTAAAGTAATCAGCTGGTAATGTTTTTAATGAAAGCTAAGGAATAGTCA
CTGACTCAAAGCTTAGCAACCTTGCATTCATAATATGAATACTGCTGGAT
AAAACAAGATCAACTCTGGTTGGGGTATGTACGTGCTGAGCGGATTAAGA
CTTACAAAGCTCGTTGTCTAAAGACCACAGATTGCTCTTCCTTGACATTT
TAACGTTGAAATTGCCGAGAATGAAGACTTTAGGGAGTTATCGACACAAG
AAGACAAATAATAATCTATTTTTTGGCATGTTCTAAAGCTTACTCGTTGG
TGACCTGTTAGTGGCGGTGGTcttttttggtttgatttccAGACAgatgg
ac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003395XLOC_003395Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005962-exon-sc0000061-1491911889:324778..325529TCONS_00005962-exon-sc0000061-1491911889:324778..325529Clytia hemisphaericaexon
TCONS_00005962-exon-sc0000061-1510915933:324778..325529TCONS_00005962-exon-sc0000061-1510915933:324778..325529Clytia hemisphaericaexon
TCONS_00005962-exon-sc0000061-1575043694:324778..325529TCONS_00005962-exon-sc0000061-1575043694:324778..325529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:324778..325529 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0653365	0	0	0	0.44055	0.48738	1.59601	1.73008	0.110116	0.477386	0	0.957303	0.173813	0	0.111301	0.477771	0.147144	0	0.0694542	0.0726788	0.126342	0.277314	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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