TCONS_00005961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005961
Unique NameTCONS_00005961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005961 ID=TCONS_00005961|Name=TCONS_00005961|organism=Clytia hemisphaerica|type=transcript|length=323bp
agataaaaaaatctaaattcttaatgcaaaagaaagaaaaatcattctTC
TTTCCACTGCTGAAAGAATTCCTTTTGAAAAgcctttttttaatgagata
atTGATTTCCAAGCTGCATAGGTCAATctttcaaaatgcaaagtttcatc
aaattgacaaaaaaacagacctgtcaatcaaaaaataattaacTCTTTGG
TGATAAAAATGATGCATCTCGACTTTTTTAAAACTCCAACAGGGTGTAGT
AAAATGGTCATATCTCACTAAAGAAGAATTTGTTCGAAATGAAATTTGGA
CAGTAGAAAGCTGAATAGCTGTG
Run BLAST on NCBI

transcript from alignment at sc0000061:309582..309904

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005961 ID=TCONS_00005961|Name=TCONS_00005961|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at sc0000061:309582..309904 (Clytia hemisphaerica)
CACAGCTATTCAGCTTTCTACTGTCCAAATTTCATTTCGAACAAATTCTT
CTTTAGTGAGATATGACCATTTTACTACACCCTGTTGGAGTTTTAAAAAA
GTCGAGATGCATCATTTTTATCACCAAAGAgttaattattttttgattga
caggtctgtttttttgtcaatttgatgaaactttgcattttgaaagATTG
ACCTATGCAGCTTGGAAATCAattatctcattaaaaaaaggcTTTTCAAA
AGGAATTCTTTCAGCAGTGGAAAGAagaatgatttttctttcttttgcat
taagaatttagatttttttatct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003394XLOC_003394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005961-exon-sc0000061-1491911889:309582..309904TCONS_00005961-exon-sc0000061-1491911889:309582..309904Clytia hemisphaericaexon
TCONS_00005961-exon-sc0000061-1510915933:309582..309904TCONS_00005961-exon-sc0000061-1510915933:309582..309904Clytia hemisphaericaexon
TCONS_00005961-exon-sc0000061-1575043694:309582..309904TCONS_00005961-exon-sc0000061-1575043694:309582..309904Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:309582..309904 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.311183	0.303452	1.76169	1.70907	0	0.331611	0	0.374545	0	0	0	0.414492	0.620874	0.214928	0.3534	0.568878	0	0.239436	0	0	0.601738	0.880521	0.356796	0	0	0.298179	0.853387	0.455379	0.690777	0.351896
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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