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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005959 ID=TCONS_00005959|Name=TCONS_00005959|organism=Clytia hemisphaerica|type=transcript|length=1690bp
cgagcaggaaaatttttcaaagaggaaAAAAAAGCATGTGATTTCTACCA
AAAAATAAAGCCttcttttcattattttacTACTAAATTACCATAattac
aagaaaaaacaatttttgctaCTATAATATAATCTTATTTTTTCACGAAG
GATAGGGCGAAGAAACGTTTTCGTCTCACAAAAAATTGTCTGCCCCTTGG
CCAGGTTACAGTAAGCTCAAACATCAAACTCAAACTTGATACACAGtttc
tttaagaacataaggttttgatgtcaaaatattaagaacattcttagaAA
CCTGTGTAAAGTAAAATACCctcaaaatgctgaaaataagaacattttaa
gaatacTTAATAGGCTTTAAACCCAAAAAGCGAAGAGCaccgaaagcttc
aaaatttttcgacattcttataaaaaatcgtttAGCATTGCGTCATTGCA
AtctcttctgacattacatcataaaccaatcagctttcgggTCCGTGATG
TGATATCAGAAGACATTGTCATTGACATTGAAACTTCAAAATCTGgccaa
tagaccttatcggagtttttgattttattaaaacagcgatgcattgtggg
attgtttcgggggtattacaatagaattccctcgaggaattcctagattt
ctattgtaatactcccgaaacaatcccacaatgcatcgcttttaaaaaaa
atcaaaaactccgataagatctgtTAGGGTGAAGTTGTTTCAtagttgtt
tcaacgttcgttATATGGACGACGTTACATGGACATTAAATGGGAGTTTT
TGTCAGGGGTGTCTAAAAGTGCATTAAATAACCAGAtaacaaacaaaatt
atataaaccatAATATCATAATAACAAAAATATATCTCTAGAATGTTACA
TATAATGTCAGTTTATATTATACATCATACAACATATTATAACGCCCTAA
TTActaattaaattcttttttcttctactTACTACCATATATTTacataa
aatattataatgGGCGTAATTAAGGGTATTTATTCAAGAGGGTAACAGTT
TGGTTGAGCCTAGGAATTAAAAATTACTGTATGTGCATGTAAAAGAGTGA
CAAGATAAATTTGTAATTATAAACATATAACATATTATGTACAATTGTAA
TTCCAGTTGTAGGTTGGGCAAGACAATATCGTACTTACATATACATGCGA
AAATATCACATGTCATCAGCGTAAAAGTGCGACTTTGTTTTTTAAAGCCC
TAATTTCGTAACACAAAACAGCgtaaaaacaaacacaaaagcAATAGACG
TAAAGAACGTTACAGTACATGACAACACAACTTTACGTAATGGTTATCGC
GTGAAAACAATAGTTTGATTATTCTAGGccttataaaaataatatagATG
TTATAAAAATGCAAGATGCTACCGATTTAAGATGACACAGGAGAAATAGT
GAGTTTGATTCCATTTTCCACGAAAAAAACCTCTGCAAGCTCCCATCCGG
CTGTTATACAATCAACAGGTTTATTTTCATGAGAATCCAAAAGCAAAGAA
AGTTTGAACCTACCTGTAAATACCTTAAAATAACATTTCTAAGAAAAGGA
AATGATTAAACAGGTCATTGATGACATTGTGACCTGTCAGCTTGCATTAG
ATGATATGGGTATCCCtccccaaaataatttttgacgAAG Run BLAST on NCBI transcript from alignment at sc0000061:273297..274986 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005959 ID=TCONS_00005959|Name=TCONS_00005959|organism=Clytia hemisphaerica|type=transcript|length=1690bp|location=Sequence derived from alignment at sc0000061:273297..274986 (Clytia hemisphaerica)
CTTcgtcaaaaattattttggggaGGGATACCCATATCATCTAATGCAAG
CTGACAGGTCACAATGTCATCAATGACCTGTTTAATCATTTCCTTTTCTT
AGAAATGTTATTTTAAGGTATTTACAGGTAGGTTCAAACTTTCTTTGCTT
TTGGATTCTCATGAAAATAAACCTGTTGATTGTATAACAGCCGGATGGGA
GCTTGCAGAGGTTTTTTTCGTGGAAAATGGAATCAAACTCACTATTTCTC
CTGTGTCATCTTAAATCGGTAGCATCTTGCATTTTTATAACATctatatt
atttttataaggCCTAGAATAATCAAACTATTGTTTTCACGCGATAACCA
TTACGTAAAGTTGTGTTGTCATGTACTGTAACGTTCTTTACGTCTATTgc
ttttgtgtttgtttttacGCTGTTTTGTGTTACGAAATTAGGGCTTTAAA
AAACAAAGTCGCACTTTTACGCTGATGACATGTGATATTTTCGCATGTAT
ATGTAAGTACGATATTGTCTTGCCCAACCTACAACTGGAATTACAATTGT
ACATAATATGTTATATGTTTATAATTACAAATTTATCTTGTCACTCTTTT
ACATGCACATACAGTAATTTTTAATTCCTAGGCTCAACCAAACTGTTACC
CTCTTGAATAAATACCCTTAATTACGCCcattataatattttatgtAAAT
ATATGGTAGTAagtagaagaaaaaagaatttaattagTAATTAGGGCGTT
ATAATATGTTGTATGATGTATAATATAAACTGACATTATATGTAACATTC
TAGAGATATATTTTTGTTATTATGATATTatggtttatataattttgttt
gttaTCTGGTTATTTAATGCACTTTTAGACACCCCTGACAAAAACTCCCA
TTTAATGTCCATGTAACGTCGTCCATATaacgaacgttgaaacaactaTG
AAACAACTTCACCCTAacagatcttatcggagtttttgattttttttaaa
agcgatgcattgtgggattgtttcgggagtattacaatagaaatctagga
attcctcgagggaattctattgtaatacccccgaaacaatcccacaatgc
atcgctgttttaataaaatcaaaaactccgataaggtctattggcCAGAT
TTTGAAGTTTCAATGTCAATGACAATGTCTTCTGATATCACATCACGGAc
ccgaaagctgattggtttatgatgtaatgtcagaagagaTTGCAATGACG
CAATGCTaaacgattttttataagaatgtcgaaaaattttgaagctttcg
gtGCTCTTCGCTTTTTGGGTTTAAAGCCTATTAAgtattcttaaaatgtt
cttattttcagcattttgagGGTATTTTACTTTACACAGGTTtctaagaa
tgttcttaatattttgacatcaaaaccttatgttcttaaagaaaCTGTGT
ATCAAGTTTGAGTTTGATGTTTGAGCTTACTGTAACCTGGCCAAGGGGCA
GACAATTTTTTGTGAGACGAAAACGTTTCTTCGCCCTATCCTTCGTGAAA
AAATAAGATTATATTATAGtagcaaaaattgttttttcttgtaatTATGG
TAATTTAGTAgtaaaataatgaaaagaaGGCTTTATTTTTTGGTAGAAAT
CACATGCTTTTTTttcctctttgaaaaattttcctgctcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005959-exon-sc0000061-1491911889:273297..274986 | TCONS_00005959-exon-sc0000061-1491911889:273297..274986 | Clytia hemisphaerica | exon |
| TCONS_00005959-exon-sc0000061-1510915933:273297..274986 | TCONS_00005959-exon-sc0000061-1510915933:273297..274986 | Clytia hemisphaerica | exon |
| TCONS_00005959-exon-sc0000061-1575043694:273297..274986 | TCONS_00005959-exon-sc0000061-1575043694:273297..274986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:273297..274986 . |
Blast
The following BLAST results are available for this feature:
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