TCONS_00005959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005959
Unique NameTCONS_00005959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005959 ID=TCONS_00005959|Name=TCONS_00005959|organism=Clytia hemisphaerica|type=transcript|length=1690bp
cgagcaggaaaatttttcaaagaggaaAAAAAAGCATGTGATTTCTACCA
AAAAATAAAGCCttcttttcattattttacTACTAAATTACCATAattac
aagaaaaaacaatttttgctaCTATAATATAATCTTATTTTTTCACGAAG
GATAGGGCGAAGAAACGTTTTCGTCTCACAAAAAATTGTCTGCCCCTTGG
CCAGGTTACAGTAAGCTCAAACATCAAACTCAAACTTGATACACAGtttc
tttaagaacataaggttttgatgtcaaaatattaagaacattcttagaAA
CCTGTGTAAAGTAAAATACCctcaaaatgctgaaaataagaacattttaa
gaatacTTAATAGGCTTTAAACCCAAAAAGCGAAGAGCaccgaaagcttc
aaaatttttcgacattcttataaaaaatcgtttAGCATTGCGTCATTGCA
AtctcttctgacattacatcataaaccaatcagctttcgggTCCGTGATG
TGATATCAGAAGACATTGTCATTGACATTGAAACTTCAAAATCTGgccaa
tagaccttatcggagtttttgattttattaaaacagcgatgcattgtggg
attgtttcgggggtattacaatagaattccctcgaggaattcctagattt
ctattgtaatactcccgaaacaatcccacaatgcatcgcttttaaaaaaa
atcaaaaactccgataagatctgtTAGGGTGAAGTTGTTTCAtagttgtt
tcaacgttcgttATATGGACGACGTTACATGGACATTAAATGGGAGTTTT
TGTCAGGGGTGTCTAAAAGTGCATTAAATAACCAGAtaacaaacaaaatt
atataaaccatAATATCATAATAACAAAAATATATCTCTAGAATGTTACA
TATAATGTCAGTTTATATTATACATCATACAACATATTATAACGCCCTAA
TTActaattaaattcttttttcttctactTACTACCATATATTTacataa
aatattataatgGGCGTAATTAAGGGTATTTATTCAAGAGGGTAACAGTT
TGGTTGAGCCTAGGAATTAAAAATTACTGTATGTGCATGTAAAAGAGTGA
CAAGATAAATTTGTAATTATAAACATATAACATATTATGTACAATTGTAA
TTCCAGTTGTAGGTTGGGCAAGACAATATCGTACTTACATATACATGCGA
AAATATCACATGTCATCAGCGTAAAAGTGCGACTTTGTTTTTTAAAGCCC
TAATTTCGTAACACAAAACAGCgtaaaaacaaacacaaaagcAATAGACG
TAAAGAACGTTACAGTACATGACAACACAACTTTACGTAATGGTTATCGC
GTGAAAACAATAGTTTGATTATTCTAGGccttataaaaataatatagATG
TTATAAAAATGCAAGATGCTACCGATTTAAGATGACACAGGAGAAATAGT
GAGTTTGATTCCATTTTCCACGAAAAAAACCTCTGCAAGCTCCCATCCGG
CTGTTATACAATCAACAGGTTTATTTTCATGAGAATCCAAAAGCAAAGAA
AGTTTGAACCTACCTGTAAATACCTTAAAATAACATTTCTAAGAAAAGGA
AATGATTAAACAGGTCATTGATGACATTGTGACCTGTCAGCTTGCATTAG
ATGATATGGGTATCCCtccccaaaataatttttgacgAAG
Run BLAST on NCBI

transcript from alignment at sc0000061:273297..274986

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005959 ID=TCONS_00005959|Name=TCONS_00005959|organism=Clytia hemisphaerica|type=transcript|length=1690bp|location=Sequence derived from alignment at sc0000061:273297..274986 (Clytia hemisphaerica)
CTTcgtcaaaaattattttggggaGGGATACCCATATCATCTAATGCAAG CTGACAGGTCACAATGTCATCAATGACCTGTTTAATCATTTCCTTTTCTT AGAAATGTTATTTTAAGGTATTTACAGGTAGGTTCAAACTTTCTTTGCTT TTGGATTCTCATGAAAATAAACCTGTTGATTGTATAACAGCCGGATGGGA GCTTGCAGAGGTTTTTTTCGTGGAAAATGGAATCAAACTCACTATTTCTC CTGTGTCATCTTAAATCGGTAGCATCTTGCATTTTTATAACATctatatt atttttataaggCCTAGAATAATCAAACTATTGTTTTCACGCGATAACCA TTACGTAAAGTTGTGTTGTCATGTACTGTAACGTTCTTTACGTCTATTgc ttttgtgtttgtttttacGCTGTTTTGTGTTACGAAATTAGGGCTTTAAA AAACAAAGTCGCACTTTTACGCTGATGACATGTGATATTTTCGCATGTAT ATGTAAGTACGATATTGTCTTGCCCAACCTACAACTGGAATTACAATTGT ACATAATATGTTATATGTTTATAATTACAAATTTATCTTGTCACTCTTTT ACATGCACATACAGTAATTTTTAATTCCTAGGCTCAACCAAACTGTTACC CTCTTGAATAAATACCCTTAATTACGCCcattataatattttatgtAAAT ATATGGTAGTAagtagaagaaaaaagaatttaattagTAATTAGGGCGTT ATAATATGTTGTATGATGTATAATATAAACTGACATTATATGTAACATTC TAGAGATATATTTTTGTTATTATGATATTatggtttatataattttgttt gttaTCTGGTTATTTAATGCACTTTTAGACACCCCTGACAAAAACTCCCA TTTAATGTCCATGTAACGTCGTCCATATaacgaacgttgaaacaactaTG AAACAACTTCACCCTAacagatcttatcggagtttttgattttttttaaa agcgatgcattgtgggattgtttcgggagtattacaatagaaatctagga attcctcgagggaattctattgtaatacccccgaaacaatcccacaatgc atcgctgttttaataaaatcaaaaactccgataaggtctattggcCAGAT TTTGAAGTTTCAATGTCAATGACAATGTCTTCTGATATCACATCACGGAc ccgaaagctgattggtttatgatgtaatgtcagaagagaTTGCAATGACG CAATGCTaaacgattttttataagaatgtcgaaaaattttgaagctttcg gtGCTCTTCGCTTTTTGGGTTTAAAGCCTATTAAgtattcttaaaatgtt cttattttcagcattttgagGGTATTTTACTTTACACAGGTTtctaagaa tgttcttaatattttgacatcaaaaccttatgttcttaaagaaaCTGTGT ATCAAGTTTGAGTTTGATGTTTGAGCTTACTGTAACCTGGCCAAGGGGCA GACAATTTTTTGTGAGACGAAAACGTTTCTTCGCCCTATCCTTCGTGAAA AAATAAGATTATATTATAGtagcaaaaattgttttttcttgtaatTATGG TAATTTAGTAgtaaaataatgaaaagaaGGCTTTATTTTTTGGTAGAAAT CACATGCTTTTTTttcctctttgaaaaattttcctgctcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003392XLOC_003392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005959-exon-sc0000061-1491911889:273297..274986TCONS_00005959-exon-sc0000061-1491911889:273297..274986Clytia hemisphaericaexon
TCONS_00005959-exon-sc0000061-1510915933:273297..274986TCONS_00005959-exon-sc0000061-1510915933:273297..274986Clytia hemisphaericaexon
TCONS_00005959-exon-sc0000061-1575043694:273297..274986TCONS_00005959-exon-sc0000061-1575043694:273297..274986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:273297..274986 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23781 0.748579 0.541726 0.465246 2.00973 1.51228 2.15621 2.9372 2.32487 1.94671 2.57616 1.54969 2.50187 3.22267 1.35256 1.50315 2.16715 1.62869 3.54886 2.60018 4.93136 4.73735 2.41372 3.31635 1.83089 2.38163 3.4513 4.04086 1.96655 1.80183
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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