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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005955 ID=TCONS_00005955|Name=TCONS_00005955|organism=Clytia hemisphaerica|type=transcript|length=1709bp
ATTGTTTTGGTGCAAAGTTTACATCAAAAATACTTCGATCGCCCAGTTCA
GTATTTGTTTTTTGTGCAAACAAGTTTTTGTGTTGATCTAATAGAAACGT
CAATATAAATGCTACCAGAAAACAAACCTTAAATCTAGattgttgaagaa
aaaaaacagattgGTTGTACTATACAAAATGATGAAGCTGAAAAGTTATT
CTACCGTAAAGGGCAGATCGAAGTTTAACTTTCGATGTATATTCCTTGTT
ATTGGGACAATATTTTCGTTCTTTTATCTTGTCGGCAAAGGATTATCAGA
CTATTTCAAGGATAAAAAAATGACGCCGGATGGAATGGCATTCAAGGCAG
ATTGTGTATGGAAAAGATACAATGTCACCGAATTAATTGCTAAAAACATT
ACCAAAGGTTCTATTAACTTTCAAAATTGCAGAGATAAATATTTTGCAAA
CAATCACAATGTTTGCAACGGCACCGTTATATTTCGATGTGAAAGTGAAA
ATCATACAAAAGCAATTCTTCTAGGGGACACTACCACTGGtattttcgtt
ttcttctttatttcaaTGATGCTCATTGTATTTTCTCGCCAAAGAGCTtc
aatatttttccaatttcgGAGAAGATGTAACGAACCAACAGAAAAGCTAA
TAAGACAATTACACGTGTGTATCGCCACAACTGTAGACCGTGAAAGAATG
GAAGAATATGCAACCCAATACCTTGATAAGTTTTTCATACAGACGTGtaa
atcttttgattttcttgatgGAATTGAATTGATGTTAGCAGGAAGTGTAG
CTGAAACATTCAGTTTACCTTTTTATCCAGGAAAATGGGATATTTTAGGA
TCACATGCGTCAATGTCAGATTTTGATTTCATGATAACTTCAAAGAATGA
ATCAGCGAGTTTAAAAAGAGACgtaaatataaaatatcaaGTCATGTATA
AGAGTAAAAACCTTGACAAAGGTTTTGTATATCTTCGGAATAATGAACTT
GGGGAAAGGGTTTCCTCTCTACAATTGAAAGAAGACTTTGAAAGTATGGT
TTTGGGAATGAATATAAACGACTTTAATAATTCTTACAAACACTGTTGCC
TGAATTACCTTTTAAAGTACTGTTGTTGCTGTCTCCGGGGAATGTCAGTT
AAAGTGAACGGTCCAGCAATCACCATAGTTAGTAAATCAATTTTATCGAA
TGATTTTTACTTTGATATTACGTATTCGGTTCGTTGCAATGATTGGCCAT
CACGGATCTCAAATTGGGGAGAGAgaaatgaaaaatggcctgaaaTCCAT
CATATTGTGAGAATTAAAAATTATGGATGTCATCTTGTGCCCAAATCTCA
CTCTAATAAACACAATCAAGAAAAAACGTGGCGTATATCCTTTTCAAGAG
CTGAAGTTGAGTTGTCGAAATTGATCCCACCTGTAGCAAGAATGGCCTTT
CTTGCAATTAAAGCAATCAGAAAATATCATTTCCCTTTCCGCTCTTCTAA
ACTGTCTCAAGTATCAAGTTATTGCTTTAAATCTACTTTTTTTCANTGAG
gcccccccagtcgaccctcaattcacgtattcacgcaaaattttttgcca
attcacgtattcacgcgccaaaaaaaccattttcacgttcacgcgctgat
tttgcttttaattcttttgttaaacgattgtgaccttattgggctaaatt
tgacctttt Run BLAST on NCBI protein sequence of TCONS_00005955-protein >TCONS_00005955-protein ID=TCONS_00005955-protein|Name=TCONS_00005955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp
MMKLKSYSTVKGRSKFNFRCIFLVIGTIFSFFYLVGKGLSDYFKDKKMTP
DGMAFKADCVWKRYNVTELIAKNITKGSINFQNCRDKYFANNHNVCNGTV
IFRCESENHTKAILLGDTTTGIFVFFFISMMLIVFSRQRASIFFQFRRRC
NEPTEKLIRQLHVCIATTVDRERMEEYATQYLDKFFIQTCKSFDFLDGIE
LMLAGSVAETFSLPFYPGKWDILGSHASMSDFDFMITSKNESASLKRDVN
IKYQVMYKSKNLDKGFVYLRNNELGERVSSLQLKEDFESMVLGMNINDFN
NSYKHCCLNYLLKYCCCCLRGMSVKVNGPAITIVSKSILSNDFYFDITYS
VRCNDWPSRISNWGERNEKWPEIHHIVRIKNYGCHLVPKSHSNKHNQEKT
WRISFSRAEVELSKLIPPVARMAFLAIKAIRKYHFPFRSSKLSQVSSYCF
KSTFFX Run BLAST on NCBI transcript from alignment at sc0000061:96584..98292 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005955 ID=TCONS_00005955|Name=TCONS_00005955|organism=Clytia hemisphaerica|type=transcript|length=1709bp|location=Sequence derived from alignment at sc0000061:96584..98292 (Clytia hemisphaerica)
aaaaggtcaaatttagcccaataaggtcacaatcgtttaacaaaagaatt
aaaagcaaaatcagcgcgtgaacgtgaaaatggtttttttggcgcgtgaa
tacgtgaattggcaaaaaattttgcgtgaatacgtgaattgagggtcgac
tgggggggcCTCANTGAAAAAAAGTAGATTTAAAGCAATAACTTGATACT
TGAGACAGTTTAGAAGAGCGGAAAGGGAAATGATATTTTCTGATTGCTTT
AATTGCAAGAAAGGCCATTCTTGCTACAGGTGGGATCAATTTCGACAACT
CAACTTCAGCTCTTGAAAAGGATATACGCCACGTTTTTTCTTGATTGTGT
TTATTAGAGTGAGATTTGGGCACAAGATGACATCCATAATTTTTAATTCT
CACAATATGATGGAtttcaggccatttttcatttcTCTCTCCCCAATTTG
AGATCCGTGATGGCCAATCATTGCAACGAACCGAATACGTAATATCAAAG
TAAAAATCATTCGATAAAATTGATTTACTAACTATGGTGATTGCTGGACC
GTTCACTTTAACTGACATTCCCCGGAGACAGCAACAACAGTACTTTAAAA
GGTAATTCAGGCAACAGTGTTTGTAAGAATTATTAAAGTCGTTTATATTC
ATTCCCAAAACCATACTTTCAAAGTCTTCTTTCAATTGTAGAGAGGAAAC
CCTTTCCCCAAGTTCATTATTCCGAAGATATACAAAACCTTTGTCAAGGT
TTTTACTCTTATACATGACttgatattttatatttacGTCTCTTTTTAAA
CTCGCTGATTCATTCTTTGAAGTTATCATGAAATCAAAATCTGACATTGA
CGCATGTGATCCTAAAATATCCCATTTTCCTGGATAAAAAGGTAAACTGA
ATGTTTCAGCTACACTTCCTGCTAACATCAATTCAATTCcatcaagaaaa
tcaaaagatttaCACGTCTGTATGAAAAACTTATCAAGGTATTGGGTTGC
ATATTCTTCCATTCTTTCACGGTCTACAGTTGTGGCGATACACACGTGTA
ATTGTCTTATTAGCTTTTCTGTTGGTTCGTTACATCTTCTCcgaaattgg
aaaaatattgaAGCTCTTTGGCGAGAAAATACAATGAGCATCAttgaaat
aaagaagaaaacgaaaataCCAGTGGTAGTGTCCCCTAGAAGAATTGCTT
TTGTATGATTTTCACTTTCACATCGAAATATAACGGTGCCGTTGCAAACA
TTGTGATTGTTTGCAAAATATTTATCTCTGCAATTTTGAAAGTTAATAGA
ACCTTTGGTAATGTTTTTAGCAATTAATTCGGTGACATTGTATCTTTTCC
ATACACAATCTGCCTTGAATGCCATTCCATCCGGCGTCATTTTTTTATCC
TTGAAATAGTCTGATAATCCTTTGCCGACAAGATAAAAGAACGAAAATAT
TGTCCCAATAACAAGGAATATACATCGAAAGTTAAACTTCGATCTGCCCT
TTACGGTAGAATAACTTTTCAGCTTCATCATTTTGTATAGTACAACcaat
ctgttttttttcttcaacaatCTAGATTTAAGGTTTGTTTTCTGGTAGCA
TTTATATTGACGTTTCTATTAGATCAACACAAAAACTTGTTTGCACAAAA
AACAAATACTGAACTGGGCGATCGAAGTATTTTTGATGTAAACTTTGCAC
CAAAACAAT Coding sequence (CDS) from alignment at sc0000061:96584..98292 >TCONS_00005955 ID=TCONS_00005955|Name=TCONS_00005955|organism=Clytia hemisphaerica|type=CDS|length=1371bp|location=Sequence derived from alignment at sc0000061:96584..98292 (Clytia hemisphaerica)
TCANTGAAAAAAAGTAGATTTAAAGCAATAACTTGATACTTGAGACAGTT
TAGAAGAGCGGAAAGGGAAATGATATTTTCTGATTGCTTTAATTGCAAGA
AAGGCCATTCTTGCTACAGGTGGGATCAATTTCGACAACTCAACTTCAGC
TCTTGAAAAGGATATACGCCACGTTTTTTCTTGATTGTGTTTATTAGAGT
GAGATTTGGGCACAAGATGACATCCATAATTTTTAATTCTCACAATATGA
TGGAtttcaggccatttttcatttcTCTCTCCCCAATTTGAGATCCGTGA
TGGCCAATCATTGCAACGAACCGAATACGTAATATCAAAGTAAAAATCAT
TCGATAAAATTGATTTACTAACTATGGTGATTGCTGGACCGTTCACTTTA
ACTGACATTCCCCGGAGACAGCAACAACAGTACTTTAAAAGGTAATTCAG
GCAACAGTGTTTGTAAGAATTATTAAAGTCGTTTATATTCATTCCCAAAA
CCATACTTTCAAAGTCTTCTTTCAATTGTAGAGAGGAAACCCTTTCCCCA
AGTTCATTATTCCGAAGATATACAAAACCTTTGTCAAGGTTTTTACTCTT
ATACATGACttgatattttatatttacGTCTCTTTTTAAACTCGCTGATT
CATTCTTTGAAGTTATCATGAAATCAAAATCTGACATTGACGCATGTGAT
CCTAAAATATCCCATTTTCCTGGATAAAAAGGTAAACTGAATGTTTCAGC
TACACTTCCTGCTAACATCAATTCAATTCcatcaagaaaatcaaaagatt
taCACGTCTGTATGAAAAACTTATCAAGGTATTGGGTTGCATATTCTTCC
ATTCTTTCACGGTCTACAGTTGTGGCGATACACACGTGTAATTGTCTTAT
TAGCTTTTCTGTTGGTTCGTTACATCTTCTCcgaaattggaaaaatattg
aAGCTCTTTGGCGAGAAAATACAATGAGCATCAttgaaataaagaagaaa
acgaaaataCCAGTGGTAGTGTCCCCTAGAAGAATTGCTTTTGTATGATT
TTCACTTTCACATCGAAATATAACGGTGCCGTTGCAAACATTGTGATTGT
TTGCAAAATATTTATCTCTGCAATTTTGAAAGTTAATAGAACCTTTGGTA
ATGTTTTTAGCAATTAATTCGGTGACATTGTATCTTTTCCATACACAATC
TGCCTTGAATGCCATTCCATCCGGCGTCATTTTTTTATCCTTGAAATAGT
CTGATAATCCTTTGCCGACAAGATAAAAGAACGAAAATATTGTCCCAATA
ACAAGGAATATACATCGAAAGTTAAACTTCGATCTGCCCTTTACGGTAGA
ATAACTTTTCAGCTTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005955-exon-sc0000061-1491911889:96584..98292 | TCONS_00005955-exon-sc0000061-1491911889:96584..98292 | Clytia hemisphaerica | exon |
| TCONS_00005955-exon-sc0000061-1510915933:96584..98292 | TCONS_00005955-exon-sc0000061-1510915933:96584..98292 | Clytia hemisphaerica | exon |
| TCONS_00005955-exon-sc0000061-1575043694:96584..98292 | TCONS_00005955-exon-sc0000061-1575043694:96584..98292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:96584..98292 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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