TCONS_00005931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005931
Unique NameTCONS_00005931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005931 ID=TCONS_00005931|Name=TCONS_00005931|organism=Clytia hemisphaerica|type=transcript|length=1680bp
catagcattattaattattctacaagaagttgattttcttcttcttcatt
tttcatcttcgtttttccattttatatttttgttttctttttgataatac
tccactccggattatctttttaacgagcacgaAACCGTCAATTAATTTTT
GCTGTATTTGAATTGATTGAACCAAGTATTTTTCTATAACATTATTTTCT
GTTTCTCCATTTTTAGAGCTATTAAAATGgttaattcattaaatttgttt
gtctttttttgcttgagtcTATTTTACCAACAAGCTCAATGCTGTCATGG
TCCTGGCTGCCGATACTCAAGTGATATTCATGGCGTTCAAGGGTCTAATA
CGGGACACCCTGTCCCCAATATAGAACAAAGAACGAAGCCTCTCACAATC
AAGGAGAGAAAAGATTTGTGGTTACGCTTAGAGAGAATGCCACATCTACC
ACGTCCGCCTTATCCACCCCCTCCGCCTTATCCACCACGTCCGCCACATC
CACCCCCTCCGCCTTATCCACCACATCCGCCATATGGAGATTTTCATCGA
CCAGcagaaatgaagaaaacaacCAATCACCGAGTAGCTGATGAAAaTTC
GGATTCAAGAAGTAAGGAGAATAAAATTGGTGTGATAGCTCTCATCGTTA
CCATTGTATTATTTGTACTGGCAATTACAATAAGTTACGTCACTCACCAA
CGTAGAAAGACGAAAAAGTTGATTGAAAGACGAATCAGCCAATCACTACC
AAGCTTGGAAGAAGATCCGGATATTGTTATGGAAGAGATTTCAGTAAACC
CGTCAGTTGTTGTGGAAAGATCATCTCAAAGTCGTTTGGAAACGAGCAAT
GATGGATTGGCAATGCTAGCcctacaaaaacaaaatgATCCTCCACCAAG
TTACGAAGCTTCTATTCAAACCACCCTCCAACCGCCCTCATATAACGAAA
CAATGAGATACAGTAATGTTGACACTACTTAATACGCATTGGTCAAAACA
GCACCATTTTCCTTCTTGTAAACAACCGTTATACAGTAgagagattatgt
atcggagatattctacggctacgatTGCGGGGTTGCCGATGCGGATCtgc
aaatatcgaacttgctttcacctgccattacttgccttactcgccatatC
CCTCGCCACTTTAACCGCATTCCAGATACATAAACTCTCTAGTAAAATTC
TCATAGTTTATACCAAATTATATGAATTATACTTAATATTTCAATCTAAA
AAAACTATTCAATCATTTTGGGAATCGAATTGAACGGaaaattttattct
tatttcaattattctaagCCCAGTTTAGATTGTGAGTTTTGACGATTTTA
CTTTATATCAGGATATTCGTGGGGGtggggcggttcaaaactaggggggc
agttcctgtaccacccctttaACCTTTGacctagtgggtctttttggatg
aaatttggcacacaagatccttgtcataaggcccgggggggggtacttag
gcaaaatgggtgccgggtatgtgcgagccataagggtaccttttctcatt
cctcaaaagtctctcaaaggggtacaaactcaaaggttggtctctgaaag
ggtcccaaaatcacgaaaatcaaaaatttctctctcaaagggtcacgatt
tccaaatattttgaccaaaatttggtgaaa
Run BLAST on NCBI

protein sequence of TCONS_00005931-protein

>TCONS_00005931-protein ID=TCONS_00005931-protein|Name=TCONS_00005931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MVNSLNLFVFFCLSLFYQQAQCCHGPGCRYSSDIHGVQGSNTGHPVPNIE
QRTKPLTIKERKDLWLRLERMPHLPRPPYPPPPPYPPRPPHPPPPPYPPH
PPYGDFHRPAEMKKTTNHRVADENSDSRSKENKIGVIALIVTIVLFVLAI
TISYVTHQRRKTKKLIERRISQSLPSLEEDPDIVMEEISVNPSVVVERSS
QSRLETSNDGLAMLALQKQNDPPPSYEASIQTTLQPPSYNETMRYSNVDT
T
Run BLAST on NCBI

transcript from alignment at sc0000061:563724..568818-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005931 ID=TCONS_00005931|Name=TCONS_00005931|organism=Clytia hemisphaerica|type=transcript|length=5095bp|location=Sequence derived from alignment at sc0000061:563724..568818- (Clytia hemisphaerica)
CATAGCATTATTAATTATTCTACAAGAAGTTGATTTTCTTCTTCTTCATT
TTTCATCTTCGTTTTTCCATTTTATATTTTTGTTTTCTTTTTGATAATAC
TCCACTCCGGATTATCTTTTTAACGAGCACGAAACCGTCAATTAATTTTT
GCTGTATTTGAATTGATTGAACCAAGTATTTTTCTATAACATTATTTTCT
GTTTCTCCATTTTTAGAGCTATTAAAATGGTTAATTCATTAAATTTGTTT
GTCTTTTTTTGCTTGAGTCTATTTTACCAACAAGCTCAATGCTGTCATGG
TCCTGGCTGCCGATACTCAAGTGATATTCATGGCGTTCAAGGGTCTAATA
CGGGACACCCTGTCCCCAATATAGAACAAAGAACGAAGCCTCTCACAATC
AAGGAGAGAAAAGATTTGTGGTTACGCTTAGAGAGAATGCCACATCTACC
ACGTCCGCCTTATCCACCCCCTCCGCCTTATCCACCACGTCCGCCACATC
CACCCCCTCCGCCTTATCCACCACATCCGCCATATGGAGATTTTCATCGA
CCAGCAGAAATGAAGAAAACAACCAATCACCGAGTAGCTGATGAAAGTGA
GTATTGTTAATTTGAAAATGAATGGCGTATGATATTCAGTGAAAACATCA
TTATATCAATCTTCCCGGGGGGGGGGGCACTCAAGCGAAATTGGGAACAG
GGACGTGCCACTGAAAACAATAAGTCTTTTTTTTAGGCTCTGGAGATATC
TGACAGGCTCCCAAATTTACAAATTTTTAAGATTTGTGTCTGACAGGGTC
GACTTTTGGTTATTTTGGACAATTTTCAGGGTGGAGAATTAAAATTCTTT
TCAATATTTCGTCTTCATCTCGTCATTTTTGCTACTTTTCAGGGTGCAAA
TGGGAAATTATTTTCTATTTTTCGTACCGTCAAGGGTCCTAAATTTACCA
AACATTCATATCTGACAGGGTCCACTTTTCAAACTCCAGCGGCACGTCCC
CGTCGGACGTCAAGGTCAGTGCCCCCGGATAATCTTCCCATCACAACTCG
TTTAAAATTTATAGCTATGGTGTTCGAAAATTGAATTTTTAAAAGAACTA
AAATATAAGAAGAGCTTTGCTTTGGTATAATTTAAAGAACAAATTAAGGC
TTTTTAAACATCCGATTTCTTAGGAAAGTGCACACGAATACTCACAAAAT
GGTGAAAATAAGAACGTGTTAAGAATATTTTTAAAGGTACAACTCAAAAA
GTTAAGAACATCCCAATATTCAAAAAAATTGAATATTCTTACAAAAAAAC
GTGTATGGGCGGGATTCTAAGATTGGATAAGACTGGTTGACCCAAAAAGA
AGTAAAGTGAAAATTTTTTCCCTTAGAATATACGCAAAAGATTTTACCAA
GAGTCAATTTCATTTTGGACTTGTTCTAACCTCTATTAGTTATACATTTT
ATAAGAACATCCAAAAAATTTCAAACTTGCGTTTGTTCTTAACTATTTGA
GTTTTAAGCCTAAAAATGATATTGAAATGCTCAAATTTTTATCATTTTGT
GAGTATTTTTGTGTGATTTCTTAACAAATTGGGCGTTTTTGAGTCTGCCA
AGCCTTAAAATGTTCTTTTAACTTGTTCTTAACATTTCAGCCATCGAAGC
CCGATATTCTTAAATAGTTTGTTGTTATAAAAATACGTGTAATGTCAATA
TTTTAATATTTAGATTCGGATTCAAGAAGTAAGGAGAATAAAATTGGTGT
GATAGCTCTCATCGTTACCATTGTATTATTTGTACTGGCAATTACAATAA
GTTACGTCACTCACCAACGTAGAAAGACGAAAAAGTTGATTGAAAGACGA
ATCAGCCAATCACTACCAAGCTTGGAAGAAGATCCGGATATTGTTATGGA
AGAGATTTCAGTAAACCCGTCAGTTGTTGTGGAAAGATCATCTCAAAGTC
GTTTGGAAACGAGCAATGATGGATTGGCAATGCTAGCCCTACAAAAACAA
AATGGTAATTCGTCTTTCCTTACGTTTTGTACACTGTTAGTGGGGTCGTT
TAGCATAATTTACATAATATACCATTCGAAAGCTCTCAAAAAACTATATA
GAAGACTTTTAAATGGGTATAGCCGATTTCATTACCTAACTCAAGATAAT
TCACGCAGAAGATGCAATTTATGGTCAATTTTAGACCAAAATGTGGCGAA
AAGTGGAACTTGCGCATGAAATATGTTGTTAGGTAAGGAAATCCGCTATA
ACCGTCTAAAAGTCAGCCTGTATTTTTCTAACACGTCCACACTATGTCCG
ATTCTGTCAGAGTCAAAGATTNCTGTCTTCCCGGGGGGGGGGGCACTCAA
GCGAAATTGGGAACAGGGACGTGCCACTGAAAACAATAAGTCTTTTTTTT
AGGCTCTGGAGATATCTGACAGGCTCCCAAATTTACAAATTTTTAAGATT
TGTGTCTGACAGGGTCGACTTTTGGTTATTTTGGACAATTTTCAGGGTGG
AGAATTAAAATTCTTTTCAATATTTCGTCTTCATCTCGTCATTTTTGCTA
CTTTTCAGGGTGCAAATGGGAAATTATTTTCTATTTTTCGTACCGTCAAG
GGTCCTAAATTTACCAAACATTCATATCTGACAGGGTCCACTTTTCAAAC
TCCAGCGGCACGTCCCCGTCGGACGTCAAGGTCAGTGCCCCCGGATAATC
TTCCCATCACAACTCGTTTAAAATTTATAGCTATGGTGTTCGAAAATTGA
ATTTTTAAAAGAACTAAAATATAAGAAGAGCTTTGCTTTGGTATAATTTA
AAGAACAAATTAAGGCTTTTTAAACATCCGATTTCTTAGGAAAGTGCACA
CGAATACTCACAAAATGGTGAAAATAAGAACGTGTTAAGAATATTTTTAA
AGGTACAACTCAAAAAGTTAAGAACATCCCAATATTCAAAAAAATTGAAT
ATTCTTACAAAAAAACGTGTATGGGCGGGATTCTAAGATTGGATAAGACT
GGTTGACCCAAAAAGAAGTAAAGTGAAAATTTTTTCCCTTAGAATATACG
CAAAAGATTTTACCAAGAGTCAATTTCATTTTGGACTTGTTCTAACCTCT
ATTAGTTATACATTTTATAAGAACATCCAAAAAATTTCAAACTTGCGTTT
GTTCTTAACTATTTGAGTTTTAAGCCTAAAAATGATATTGAAATGCTCAA
ATTTTTATCATTTTGTGAGTATTTTTGTGTGATTTCTTAACAAATTGGGC
GTTTTTGAGTCTGCCAAGCCTTAAAATGTTCTTTTAACTTGTTCTTAACA
TTTCAGCCATCGAAGCCCGATATTCTTAAATAGTTTGTTGTTATAAAAAT
ACGTGTAATGTCAATATTTTAATATTTAGATTCGGATTCAAGAAGTAAGG
AGAATAAAATTGGTGTGNAAGTCAGCCTGTATTTTTCTAACACGTCCACA
CTATGTCCGATTCTGTCAGAGTCAAAGATTGGTAAAACTTAAAGGTCCCC
GGTAATGTTTTTCAGCTAATTCGAACGGTATATTATTAACAATTATTATG
ATCCATATAGCGGTCATTGAGTAAGCCATTAAAGGTTCAATCGGCGGGCG
GTATTGTGACTCAAATTGTCATACCCGCGCTGAGGAAACTAAAGCGCCAG
GCTTCAGAGTGCTAAAATATCATTAACGGCCCGGGTATAGGGTAATAACG
TCATTTGCGACCCGCTCGGAATTGGATTGAAGTCGTTGCATTGAAGCGAA
GAGACTAAACTAACGTCAGAAAAACACTTTTTGGTCATTTGCGGCCCGCT
CGCAAGGTGCTAAAAATTTGTTAAAGACATTTCATTGAAGCGAAAAGAAT
TGGTTGACGCTAGAAAAAAACGTTGTTTGAATGTCCGATATGGATAATAA
TAGTAATGCCATTTGCGCCCTCCGCTTCGCGTCGGGCCCAAATGACACTA
TCGGGCCAATAATCAAACTACGCGGGTAGAAAATAACAAACAACGACCTC
AAACTGAATGCTATTGTTATATTAACCTTTGACGTCAGTGTTTTGGACAT
TAAATGTTGTTAGCCTCACTAAAGTTTCCACTCTCAAAAAGGTCTTGAAA
TAAAATTTTCACGAAAGATAGGGATTCGTTAGAAGATTCCAGTGGTGCAT
TTAATGGAGGTTTAAGATTTACGAGGAAGAGTGTTTCTTTTAGCCATACT
CCTTATAAATAAATGAAACTGTCCTTCAGAAATATTGACACCCCCGCCCT
CAGATCTGCAACTGTATCACGTGACCTTGATGTTACTTCTTTTCATTAAC
AGATCCTCCACCAAGTTACGAAGCTTCTATTCAAACCACCCTCCAACCGC
CCTCATATAACGAAACAATGAGATACAGTAATGTTGACACTACTTAATAC
GCATTGGTCAAAACAGCACCATTTTCCTTCTTGTAAACAACCGTTATACA
GTAGAGAGATTATGTATCGGAGATATTCTACGGCTACGATTGCGGGGTTG
CCGATGCGGATCTGCAAATATCGAACTTGCTTTCACCTGCCATTACTTGC
CTTACTCGCCATATCCCTCGCCACTTTAACCGCATTCCAGATACATAAAC
TCTCTAGTAAAATTCTCATAGTTTATACCAAATTATATGAATTATACTTA
ATATTTCAATCTAAAAAAACTATTCAATCATTTTGGGAATCGAATTGAAC
GGAAAATTTTATTCTTATTTCAATTATTCTAAGCCCAGTTTAGATTGTGA
GTTTTGACGATTTTACTTTATATCAGGATATTCGTGGGGGTGGGGCGGTT
CAAAACTAGGGGGGCAGTTCCTGTACCACCCCTTTAACCTTTGACCTAGT
GGGTCTTTTTGGATGAAATTTGGCACACAAGATCCTTGTCATAAGGCCCG
GGGGGGGGTACTTAGGCAAAATGGGTGCCGGGTATGTGCGAGCCATAAGG
GTACCTTTTCTCATTCCTCAAAAGTCTCTCAAAGGGGTACAAACTCAAAG
GTTGGTCTCTGAAAGGGTCCCAAAATCACGAAAATCAAAAATTTCTCTCT
CAAAGGGTCACGATTTCCAAATATTTTGACCAAAATTTGGTGAAA

Coding sequence (CDS) from alignment at sc0000061:563724..568818-

>TCONS_00005931 ID=TCONS_00005931|Name=TCONS_00005931|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at sc0000061:563724..568818- (Clytia hemisphaerica)
ATCCTCCACCAAGTTACGAAGCTTCTATTCAAACCACCCTCCAACCGCCC
TCATATAACGAAACAATGAGATACAGTAATGTTGACACTACTTAAATTCG
GATTCAAGAAGTAAGGAGAATAAAATTGGTGTGATAGCTCTCATCGTTAC
CATTGTATTATTTGTACTGGCAATTACAATAAGTTACGTCACTCACCAAC
GTAGAAAGACGAAAAAGTTGATTGAAAGACGAATCAGCCAATCACTACCA
AGCTTGGAAGAAGATCCGGATATTGTTATGGAAGAGATTTCAGTAAACCC
GTCAGTTGTTGTGGAAAGATCATCTCAAAGTCGTTTGGAAACGAGCAATG
ATGGATTGGCAATGCTAGCCCTACAAAAACAAAATGATGGTTAATTCATT
AAATTTGTTTGTCTTTTTTTGCTTGAGTCTATTTTACCAACAAGCTCAAT
GCTGTCATGGTCCTGGCTGCCGATACTCAAGTGATATTCATGGCGTTCAA
GGGTCTAATACGGGACACCCTGTCCCCAATATAGAACAAAGAACGAAGCC
TCTCACAATCAAGGAGAGAAAAGATTTGTGGTTACGCTTAGAGAGAATGC
CACATCTACCACGTCCGCCTTATCCACCCCCTCCGCCTTATCCACCACGT
CCGCCACATCCACCCCCTCCGCCTTATCCACCACATCCGCCATATGGAGA
TTTTCATCGACCAGCAGAAATGAAGAAAACAACCAATCACCGAGTAGCTG
ATGAAAATCCTCCACCAAGTTACGAAGCTTCTATTCAAACCACCCTCCAA
CCGCCCTCATATAACGAAACAATGAGATACAGTAATGTTGACACTACTTA
AATTCGGATTCAAGAAGTAAGGAGAATAAAATTGGTGTGATAGCTCTCAT
CGTTACCATTGTATTATTTGTACTGGCAATTACAATAAGTTACGTCACTC
ACCAACGTAGAAAGACGAAAAAGTTGATTGAAAGACGAATCAGCCAATCA
CTACCAAGCTTGGAAGAAGATCCGGATATTGTTATGGAAGAGATTTCAGT
AAACCCGTCAGTTGTTGTGGAAAGATCATCTCAAAGTCGTTTGGAAACGA
GCAATGATGGATTGGCAATGCTAGCCCTACAAAAACAAAATGATGGTTAA
TTCATTAAATTTGTTTGTCTTTTTTTGCTTGAGTCTATTTTACCAACAAG
CTCAATGCTGTCATGGTCCTGGCTGCCGATACTCAAGTGATATTCATGGC
GTTCAAGGGTCTAATACGGGACACCCTGTCCCCAATATAGAACAAAGAAC
GAAGCCTCTCACAATCAAGGAGAGAAAAGATTTGTGGTTACGCTTAGAGA
GAATGCCACATCTACCACGTCCGCCTTATCCACCCCCTCCGCCTTATCCA
CCACGTCCGCCACATCCACCCCCTCCGCCTTATCCACCACATCCGCCATA
TGGAGATTTTCATCGACCAGCAGAAATGAAGAAAACAACCAATCACCGAG
TAGCTGATGAAAATCCTCCACCAAGTTACGAAGCTTCTATTCAAACCACC
CTCCAACCGCCCTCATATAACGAAACAATGAGATACAGTAATGTTGACAC
TACTTAAATTCGGATTCAAGAAGTAAGGAGAATAAAATTGGTGTGATAGC
TCTCATCGTTACCATTGTATTATTTGTACTGGCAATTACAATAAGTTACG
TCACTCACCAACGTAGAAAGACGAAAAAGTTGATTGAAAGACGAATCAGC
CAATCACTACCAAGCTTGGAAGAAGATCCGGATATTGTTATGGAAGAGAT
TTCAGTAAACCCGTCAGTTGTTGTGGAAAGATCATCTCAAAGTCGTTTGG
AAACGAGCAATGATGGATTGGCAATGCTAGCCCTACAAAAACAAAATGAT
GGTTAATTCATTAAATTTGTTTGTCTTTTTTTGCTTGAGTCTATTTTACC
AACAAGCTCAATGCTGTCATGGTCCTGGCTGCCGATACTCAAGTGATATT
CATGGCGTTCAAGGGTCTAATACGGGACACCCTGTCCCCAATATAGAACA
AAGAACGAAGCCTCTCACAATCAAGGAGAGAAAAGATTTGTGGTTACGCT
TAGAGAGAATGCCACATCTACCACGTCCGCCTTATCCACCCCCTCCGCCT
TATCCACCACGTCCGCCACATCCACCCCCTCCGCCTTATCCACCACATCC
GCCATATGGAGATTTTCATCGACCAGCAGAAATGAAGAAAACAACCAATC
ACCGAGTAGCTGATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003375XLOC_003375Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005931-proteinTCONS_00005931-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005931-exon-sc0000061-1575043694:568223..568818TCONS_00005931-exon-sc0000061-1575043694:568223..568818Clytia hemisphaericaexon
TCONS_00005931-exon-sc0000061-1575043694:566815..567105TCONS_00005931-exon-sc0000061-1575043694:566815..567105Clytia hemisphaericaexon
TCONS_00005931-exon-sc0000061-1575043694:563724..564516TCONS_00005931-exon-sc0000061-1575043694:563724..564516Clytia hemisphaericaexon
TCONS_00005931-exon-sc0000061-1510915933:568223..568818TCONS_00005931-exon-sc0000061-1510915933:568223..568818Clytia hemisphaericaexon
TCONS_00005931-exon-sc0000061-1510915933:566815..567105TCONS_00005931-exon-sc0000061-1510915933:566815..567105Clytia hemisphaericaexon
TCONS_00005931-exon-sc0000061-1510915933:563724..564516TCONS_00005931-exon-sc0000061-1510915933:563724..564516Clytia hemisphaericaexon
TCONS_00005931-exon-sc0000061-1491911889:568223..568818TCONS_00005931-exon-sc0000061-1491911889:568223..568818Clytia hemisphaericaexon
TCONS_00005931-exon-sc0000061-1491911889:566815..567105TCONS_00005931-exon-sc0000061-1491911889:566815..567105Clytia hemisphaericaexon
TCONS_00005931-exon-sc0000061-1491911889:563724..564516TCONS_00005931-exon-sc0000061-1491911889:563724..564516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:563724..568818 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.80253	2.92946	2.531	2.30428	7.56622	5.43656	1.8669	2.01781	2.10519	2.09334	1.68926	1.9107	4.65847	4.51243	5.26042	5.03579	1.06573	0.786982	0.639401	0.612835	1.29715	1.06988	1.80624	2.04965	2.70717	3.06394	1.00695	1.26174	2.21199	1.56511
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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