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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005923 ID=TCONS_00005923|Name=TCONS_00005923|organism=Clytia hemisphaerica|type=transcript|length=2375bpRun BLAST on NCBI protein sequence of TCONS_00005923-protein >TCONS_00005923-protein ID=TCONS_00005923-protein|Name=TCONS_00005923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp MNLPEVTKNPIYGSSMIGASYPMSMSVPYPFKGAARLEITRQPKKRGYRFRun BLAST on NCBI transcript from alignment at sc0000061:512394..523230- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005923 ID=TCONS_00005923|Name=TCONS_00005923|organism=Clytia hemisphaerica|type=transcript|length=10837bp|location=Sequence derived from alignment at sc0000061:512394..523230- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000061:512394..523230- >TCONS_00005923 ID=TCONS_00005923|Name=TCONS_00005923|organism=Clytia hemisphaerica|type=CDS|length=15774bp|location=Sequence derived from alignment at sc0000061:512394..523230- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005923 vs. Swiss-Prot (Human)
Match: NFKB2 (Nuclear factor NF-kappa-B p100 subunit OS=Homo sapiens GN=NFKB2 PE=1 SV=4) HSP 1 Score: 202.601 bits (514), Expect = 2.045e-54 Identity = 127/347 (36.60%), Postives = 184/347 (53.03%), Query Frame = 3
Query: 180 LEITRQPKKRGYRFRYLSEGKTHGMLPGEPSDSGEKVFPSVRIVNHLGNAKVVMYLVTEEDPQFIHPHTLLIDKIPVGGYHIFDVN-EDFDVQLKNVAIQHVNKQDLPTKMLDRHLQSKYIKEVYSMNQYGANPKIDIDTFASNLADKAKKQPFFDHRTKQALTGEEEIQLSLAMRKKQKEINMSSCRLCFIAFLQDPETGKFDKILQPVHSDLIIDGKKKEGAPLKIIRVSHVAGSVEGGKEVWLLSDKIDAEDTEVYFWERSQDKQEMFWEGFGEFNKTDVYKQALIVFKIPPYCNQNIDQPRTVNLQLRRKKDRNCVSDVHHFSYKPKHYDRYGLREKRRKNLP 1217
L I QPK+RG+RFRY EG +HG LPG S+ G K +P+V+I N+ G AK+ + LVT DP H H+L+ + G V +D Q N+ + HV K+++ M+ + LQ + ++ Q LT E+ +L ++ +K +++S RL F AFL+ + G F L+PV S I D K + LKI R+ AGSV GG EV+LL DK+ +D EV F+E ++ W+ FG+F+ TDV+KQ IVF+ PPY I++P TV LQL+RK+ + VSD F+Y P D+ ++ KRRK LP
Sbjct: 40 LVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPAKIEVDLVTHSDPPRAHAHSLVGKQCSELGICAVSVGPKDMTAQFNNLGVLHVTKKNMMGTMIQK-LQRQRLRS-----------------------------------RPQGLTEAEQRELEQEAKELKKVMDLSIVRLRFSAFLRASD-GSFSLPLKPVISQPIHDSKSPGASNLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDDENG----WQAFGDFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGD-VSDSKQFTYYPLVEDKEEVQRKRRKALP 344 The following BLAST results are available for this feature:
BLAST of TCONS_00005923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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