TCONS_00005923-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005923-protein
Unique NameTCONS_00005923-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005923-protein ID=TCONS_00005923-protein|Name=TCONS_00005923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
MNLPEVTKNPIYGSSMIGASYPMSMSVPYPFKGAARLEITRQPKKRGYRF
RYLSEGKTHGMLPGEPSDSGEKVFPSVRIVNHLGNAKVVMYLVTEEDPQF
IHPHTLLIDKIPVGGYHIFDVNEDFDVQLKNVAIQHVNKQDLPTKMLDRH
LQSKYIKEVYSMNQYGANPKIDIDTFASNLADKAKKQPFFDHRTKQALTG
EEEIQLSLAMRKKQKEINMSSCRLCFIAFLQDPETGKFDKILQPVHSDLI
IDGKKKEGAPLKIIRVSHVAGSVEGGKEVWLLSDKIDAEDTEVYFWERSQ
DKQEMFWEGFGEFNKTDVYKQALIVFKIPPYCNQNIDQPRTVNLQLRRKK
DRNCVSDVHHFSYKPKHYDRYGLREKRRKNLPPEIYESTPPIKRQHMDYA
ADSPPASTASKYQPYDSAHINNPTLSDIVMPQGRNEYRAIVDASTRHSPA
VPTTFNGPLDNYRKNHHSSKESDTDEN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003373XLOC_003373Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005923TCONS_00005923Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000451NFkB/Dor
IPR011539RHD_DNA_bind_dom
IPR013783Ig-like_fold
IPR032397RHD_dimer
IPR008967p53-like_TF_DNA-bd
IPR014756Ig_E-set
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000451NF-kappa-B/DorsalPRINTSPR00057NFKBTNSCPFCTcoord: 313..331
score: 55.84
coord: 355..369
score: 36.81
coord: 41..58
score: 57.25
IPR011539Rel homology domain (RHD), DNA-binding domainGENE3D2.60.40.340coord: 33..254
e-value: 5.0E-42
score: 143.5
IPR011539Rel homology domain (RHD), DNA-binding domainPFAMPF00554RHD_DNA_bindcoord: 37..252
e-value: 1.6E-35
score: 122.4
IPR011539Rel homology domain (RHD), DNA-binding domainPROSITEPS50254REL_2coord: 32..257
score: 38.547
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 259..366
e-value: 5.6E-28
score: 96.7
IPR032397Rel homology dimerisation domainPFAMPF16179RHD_dimercoord: 262..366
e-value: 2.8E-31
score: 107.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 443..477
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 379..418
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 36..263
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 261..382

Blast
[Close]
BLAST of TCONS_00005923-protein vs. Swiss-Prot (Human)
Match: NFKB2 (Nuclear factor NF-kappa-B p100 subunit OS=Homo sapiens GN=NFKB2 PE=1 SV=4)

HSP 1 Score: 202.216 bits (513), Expect = 9.230e-57
Identity = 127/347 (36.60%), Postives = 184/347 (53.03%), Query Frame = 0 
Query:   37 LEITRQPKKRGYRFRYLSEGKTHGMLPGEPSDSGEKVFPSVRIVNHLGNAKVVMYLVTEEDPQFIHPHTLLIDKIPVGGYHIFDVN-EDFDVQLKNVAIQHVNKQDLPTKMLDRHLQSKYIKEVYSMNQYGANPKIDIDTFASNLADKAKKQPFFDHRTKQALTGEEEIQLSLAMRKKQKEINMSSCRLCFIAFLQDPETGKFDKILQPVHSDLIIDGKKKEGAPLKIIRVSHVAGSVEGGKEVWLLSDKIDAEDTEVYFWERSQDKQEMFWEGFGEFNKTDVYKQALIVFKIPPYCNQNIDQPRTVNLQLRRKKDRNCVSDVHHFSYKPKHYDRYGLREKRRKNLP 382
            L I  QPK+RG+RFRY  EG +HG LPG  S+ G K +P+V+I N+ G AK+ + LVT  DP   H H+L+  +    G     V  +D   Q  N+ + HV K+++   M+ + LQ + ++                                      Q LT  E+ +L    ++ +K +++S  RL F AFL+  + G F   L+PV S  I D K    + LKI R+   AGSV GG EV+LL DK+  +D EV F+E  ++     W+ FG+F+ TDV+KQ  IVF+ PPY    I++P TV LQL+RK+  + VSD   F+Y P   D+  ++ KRRK LP
Sbjct:   40 LVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPAKIEVDLVTHSDPPRAHAHSLVGKQCSELGICAVSVGPKDMTAQFNNLGVLHVTKKNMMGTMIQK-LQRQRLRS-----------------------------------RPQGLTEAEQRELEQEAKELKKVMDLSIVRLRFSAFLRASD-GSFSLPLKPVISQPIHDSKSPGASNLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDDENG----WQAFGDFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGD-VSDSKQFTYYPLVEDKEEVQRKRRKALP 344
The following BLAST results are available for this feature:
BLAST of TCONS_00005923-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFKB29.230e-5736.60Nuclear factor NF-kappa-B p100 subunit OS=Homo sap... [more]
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