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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005911 ID=TCONS_00005911|Name=TCONS_00005911|organism=Clytia hemisphaerica|type=transcript|length=4420bpRun BLAST on NCBI protein sequence of TCONS_00005911-protein >TCONS_00005911-protein ID=TCONS_00005911-protein|Name=TCONS_00005911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1372bp ATVFASPTPPQTSTEEGTEVRVKKKSIISIKGRKSSQAVMMEEPNKPSPKRun BLAST on NCBI transcript from alignment at sc0000061:340936..363046- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005911 ID=TCONS_00005911|Name=TCONS_00005911|organism=Clytia hemisphaerica|type=transcript|length=22111bp|location=Sequence derived from alignment at sc0000061:340936..363046- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000061:340936..363046- >TCONS_00005911 ID=TCONS_00005911|Name=TCONS_00005911|organism=Clytia hemisphaerica|type=CDS|length=115332bp|location=Sequence derived from alignment at sc0000061:340936..363046- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005911 vs. Swiss-Prot (Human)
Match: NOS1 (Nitric oxide synthase, brain OS=Homo sapiens GN=NOS1 PE=1 SV=2) HSP 1 Score: 973.77 bits (2516), Expect = 0.000e+0 Identity = 523/1151 (45.44%), Postives = 731/1151 (63.51%), Query Frame = 3
Query: 681 EKEKKVTILENGGPKKPRDRGLPRKISMTTENMCRLKNMTTNNETIDTLHI-SAERQHCSGTRCLGSVVQPSGGLGTEMLAPGELRSQDELLRQAKDFISQYYKSLXXXXXXXXXXXXXXXXXXXIELRGTYDLDEKELVFGARLAWRNAARCIGRIQWKKLQVFDFRHVTTAKEMFDCILQHLQFATNKGKIRSTISIFPHKTEDMKEFRVWNSQIIRYAGYKKIDGTIVGDPASVEFTEIAQNLGWKGAGTQFDVLPLILQATGRKPEWFEIPKEYVMEVQIKHPNYPKLDELGLKWYAVPAVSNIMLDCGGLQFTACPFNGWYMATEVGARNFTDTNRYNLLKQVAQKMGLNTINNSSMWKDRVQLELTFATLNSYTEAGVTIVDHHTASESFMKHMKDEEKVRGGCPADWVWIVPPISGSVTPVFHQEMLNYKLYPSYEYLEDAWK--YLRVERPSPLKKRRT-FKDVVKIVELSNSLFGGILKRRSKVSILYATETGKSKAFANLLNEVFLHGFDSKVYCMQDYRVTDIENEQCVLFVASTFGNGEPPDNGQDFVKGLHQMIYPTESMKKYRSFSNLHQGLN-------------EIPEN--QKGLLCNLRYSVFGLGSRAYPKFCEFGHLLDNSFAKLGGEQIYPMGEGDELNGQEESFKDWARACFKAACDVFVIKD----AKLPASIMDNPKEWKDGCFRIKKHDKKTERTSICDELRVMHGRKVFPCPIIDVQNLQTKHSDRVTNLVQISSEGEEGMMYQPGDHLYIYPENDSKRVDKLLKRIRCETDMDELVMVE-----QTSRNDIWDAIDKVPLPN-TLRRIFTNYLDIESPPSRKLLGFFALCAKDEDEKTKLNDLATVIETYDDWRLQDYPSVLEVLNQFKSIDVDVTLLIDQLPLQKARPYSISSSPKMHPNQIHVTVAFVSYKVKD--NVTHLGVCSSYLNNRRKGDIVPCYVKRAYSFYLPEDKSAPIMLVGPGTGIAPFRSFWQXXXXXXXXXX-----XXLYFGCRHPLKDNIYKQEMNEALAKKGLTKLHVAYSRQEFKPKVYVQDLLR-QNAEEVCNFLVGESSHFYVCGDVTMASDVFQCLLDILQKHSAFSQSEAEALIADMKKAGRYHEDIFGVTLKVREVTTRVRS 4022
EKE+ T G + P G P K ++KN T DTLH+ S C+ C+GS++ PS P ++R++ +L AK+FI QYY S+KR + ME E K+ I+ TY L + EL++GA+ AWRNA+RC+GRIQW KLQVFD R TTA MF+ I H+++ATNKG +RS I+IFP +T+ +FRVWNSQ+IRYAGYK+ DG+ +GDPA+V+FTEI GWK +FDVLPL+LQA G PE F+IP E V+EV I+HP + +LGLKWY +PAVSN++L+ GGL+F+ACPF+GWYM TE+G R++ D +RYN+L++VA+KM L+ SS+WKD+ +E+ A L S+ VTIVDHH+A+ESF+KHM++E + RGGCPADWVWIVPP+SGS+TPVFHQEMLNY+L PS+EY D W + +P K+R FK + + V+ S L G + +R K +ILYATETGKS+A+A L E+F H FD+KV M++Y + +E+E VL V STFGNG+PP+NG+ F L +M +P ++ +S+ ++ ++ +N G L N+R+SVFGLGSRAYP FC FGH +D +LGGE+I M EGDEL GQEE+F+ WA+ FKAACDVF + D K S++ N + WK FR+ + E T L +H ++V ++ QNLQ+ S R T V++ + G + + YQPGDHL ++P N V+ L++R+ ++++V VE T+ I + D++ LP T+ + F YLDI +PP+ L FA A E EK +L L+ ++ Y++W+ P+++EVL +F SI + TLL+ QL L + R YSISSSP M+P+++H+TVA VSY+ +D H GVCSS+LN + ++VPC+V+ A SF+LP + P +LVGPGTGIAPFRSFWQ+ + + ++L FGCR D+IY++E +A K +L+ AYSR+ KPK YVQD+L+ Q AE V L + H YVCGDVTMA+DV + + I+ + S +A I+ M+ RYHEDIFGVTL+ EVT R+RS
Sbjct: 281 EKEQPPT----SGKQSPTKNGSPSKCP----RFLKVKNWETEVVLTDTLHLKSTLETGCTEYICMGSIMHPS----QHARRPEDVRTKGQLFPLAKEFIDQYYSSIKRFGSKAHMERLEEVNKE-IDTTSTYQLKDTELIYGAKHAWRNASRCVGRIQWSKLQVFDARDCTTAHGMFNYICNHVKYATNKGNLRSAITIFPQRTDGKHDFRVWNSQLIRYAGYKQPDGSTLGDPANVQFTEICIQQGWKPPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFEWFKDLGLKWYGLPAVSNMLLEIGGLEFSACPFSGWYMGTEIGVRDYCDNSRYNILEEVAKKMNLDMRKTSSLWKDQALVEINIAVLYSFQSDKVTIVDHHSATESFIKHMENEYRCRGGCPADWVWIVPPMSGSITPVFHQEMLNYRLTPSFEYQPDPWNTHVWKGTNGTPTKRRAIGFKKLAEAVKFSAKLMGQAMAKRVKATILYATETGKSQAYAKTLCEIFKHAFDAKVMSMEEYDIVHLEHETLVLVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSQKSSGDGPDLRDNFESAGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKANNSLISNDRSWKRNKFRLTFVAEAPELTQ---GLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGSQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPVNQMVKVELLEERNTALGVISNWTDELRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATSEKEKQRLLVLSKGLQEYEEWKWGKNPTIVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYRTRDGEGPIHHGVCSSWLNRIQADELVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDKPKKYVQDILQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSAEDAGVFISRMRDDNRYHEDIFGVTLRTYEVTNRLRS 1415 The following BLAST results are available for this feature:
BLAST of TCONS_00005911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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