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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005896 ID=TCONS_00005896|Name=TCONS_00005896|organism=Clytia hemisphaerica|type=transcript|length=3820bp
TAGAGAAGTTGTactaaaatcagaaaaaaagagaagaaatagaaaaaaca
agaaataaaacaagaaataaaaaaaaaacaagaactaaaaagacaagaaa
ttaaaaaacgggaaataaaaaaacatgggaCCACCAAGAATTCTCAGTTG
TATCGATGGAAATGTTATTACCAGCAAAGAAAATCTACCCATTGGTGTTA
CAGAGGAGAAAAAGACAAACATACATTTTCCACTTTTTCAATGTCCAACG
TGCAAAGTTGAGATGAGAAAGAAGTTGAGAGATCATATGAAACACAAACA
CggctTCCCTCTTAAGCAAGGGTCTTTCATTGCGAGCAAACAAGAGCGAA
CACAGATATGCCAACGAAAGCATAAGGGGAACCACATCCTTTTACCATGT
GAGATATGCAATCACTGGATGTGTAGTATAAATACTTTCATTGATCATAT
GGAAAAACATAAGATTTATCGTACTGGTGCTTTGGCGTTGATTGAATCAC
ATAAGATGAAATTTTGGAATACTAAATCTGTGTTGACTCGAGAGCTTGAC
AATTTCGGAAACCTGGTGACGACAACAACCAAATTTGATTTAGATTCAAT
GCTGTCTTCAGATACACAGAAAAGAGCAATCGCATTCAAATCAATGGAGG
ACCGCTCTCTTCCCACGAAGACAATTAAATTATGTACGAATGCAGGGTCG
CCGCTGacgaaaattaaagaaaagtcACCTGGCAACATTTCTTCTCCTCT
TCCAAAAAGAGGAATCGAAACCAACAATACATCAGTTAACTTCAGTTGTT
TCAGCATACGCGAATCAACGAGTGTTAGTTCAAAGGCAGGCTCGTTGATA
AATAATGAAAAGACATTGAATAAAGGGACTTTGTGTACAACCTCTTTATT
TGACAATGTCGGCACTCCTCCGATTAATAAAGCATACACAACAATGAATC
CAACATCTTTAAAAGAAGCGCTGCTAAAGGCTCGAAATGAATCGCGTAAA
CGAAAAATCGAAGCAGTCCTCACTGAAGATGATGATAAAATCAtatcaaa
aaactcaaaaatcgGACGCATTGAATCAGAAGTCGAATCGCCTGAAATTG
TCAGTGAGAAAAAACGAACAATTGAGGGACGAAGCAGTGCTGGTGTCGGT
AGTAGTGATCTTCCTACAAAAAAGACCAAACTTGATAAAGATAAGACAGG
TTCTAAAACAAGATCTAAGAAAATTAACCTTTCTAAAAAGATGAATTTAG
CTGGCTTGATGTCTTTTTGCCCTGAGTGTAATTTAGAAATGCAAACGAAA
CATATACGCGGTCATTTGGAAACCAAGCACAGTTACGTAAAGATGCAACT
AAAAGTTGAATACGCGAGACAGCGCAGAATGGCGCTCTGCTTTAACACCC
ATCATGGTCAACACGGTGTCATGCGTTGCCCTGACAACTCATGTGATAAG
TGGATATGTGCTGGAGGGATAAGTTTTCAGGATCACATGCAATACAAACA
TGGTTCTTCTCTTGCTGATTCtctaaaattaagaaaaaaacttatCGAAA
AGTTTCACGGTGGTCAAGTTGTACTCGTTAGAGATATGATGCGCAAAGTT
AAAGAGCCGAGTACTTCATCATTTGTTGATTCAACATTGATTCTTGGCGA
TTCTAACACTACTGAAGTCCAACATTCCCAAAGTTCGACTGCAGCAAAAA
CTGAATTCAAAATAAGCGAAACTGTAACTGAAAAGGAAACAGATTCTAAC
CGTCCCAAACCAGCACTGAGTCAGAATGATAATGTTTCTATTATCAACCT
TAGCGATGATAAGATTTCAAAACCATCAGAAAATCCCACAAATTTAACTG
CTGAAAAGTCGAATGTAAATTCTGAAACCAAACACTTAAATCATCTCAAA
ACGTTACAGTTTCAATCACCTACACCAACAGTAGATTCAAGTACAAATGT
CAAACATTCTGCAATTAAACTGTCGAAACTTCCAAAACTGTCAGATGAAA
GTAATGCTTATAATAACCTTGATCTAAAACAGAGCGCTGTGACCGTTCAA
GAAAAAGCTGCCTTGACATCAAAATATACACCAATTCAATGTTATCCGAG
AGACGCTTTGAAAGTATCCAATAGCCAGAAGTCTGACAGCGAATTATTCG
AACAAGTACATGATTCGTCCATTAATGTAACATCAATCCCTAAAAACATG
CCGAATAACAGATATGCTCCTCAGTCTAGCAACCTACaagaattcattaa
aaaatcgATCATAAAACCTTCCTCGAACCCGGAAAACGATTCTTCGCAAC
TTCAGAATGAATTGCCAGCTGAAATTATACACGAAAGTCAAGAAAATGCG
ACTTGTGGTGccaacattgaaaaaattacaGAATGCAGCGAGAATAGCCT
TGTAGCCACCCATTATAACACTGAAATTGTTGCATTGAAAAATTCACTCG
AGATTGTGAAACATACCACAGATTTACGGAGTACCTTGAAACACCAAAGC
ACCCAAACCGAATTATCCATGCCACATACCACAATACATAGGGTTGACGC
CAAGTCCCAAACCGTTAGTCTTTCGCCAGACTGTTTGAATGGGAATGTCT
CGGTGTCCAGCCACACCCTCAAAGAATTGGTGCAAGaccttcaaaatatt
tcaacaacCGCTAAACTATTCATCAGgaAAGCTCctgaaatcaaagaaaa
gttGACAGTGGTATGCAAAGAAGTTTTGATGGATTTCTCTGAACCCctta
aaaaagattttgcaaAACAATAgcctaatttgaaatttgaattttttttg
tatttgattttgtatttgagttttgttaaattttgttaaattttgttaaa
ttttgttaaattttgtttataGACCAGAGTCCGAGATTCAAAAAatgcct
taaaacaggttttcgtaGGGAACCACTTAGATTAGGACAAATATTCTGAT
ATTATGTTCCTAATAgagtgtagaattgacaaaaaagttTGCCCTTTGGA
TCTCCTGCACTTTTGGAGTGAATTCTTTTTTAGTTAATCACGAGAAATTA
TCAAGGGTCCTCCTTTGCTATAACGGTTTTCTCGAAGTTTGAAATCAAAT
ATTTGATGGAACAATCTCTTATCAGCTTCTGCtcgaaaagtagataaaga
aattggggttatttgttaagtttcgacacctggtgccgagaaatagcttt
tttaaggcgaaaaatcgacatTTCGTCAGCATTTAGCTGGGATCATATTC
AGAAAATAATTATTCCCAcaactggatagccctgaaatagtagtatccaa
aaattgTATGGTTTGTTAAATTTAAATATCAAGATCTCGATTTTTGGATA
GCTCGGTTCGTTTGtgcgttagttaccagcttttctcgagattggctcct
tcaatttttctgatttttggcacaaagatgcataactattaaacctcaaa
tgtgacggagctcgattgtCGTAAAAATACGGCtagaaaaagggtttttt
ggacttcgtgaaatattggatcattgttttttttctgattttcttgcATG
GAAGTAGGTAATaaatggctcaagcagattttcgtaaaaaagattttcgg
tgaaattttggttttttagtgttttttttttagaaacaatCAGCAGTTTT
TCATATTATCATATCATCATATTATCACACGGGGGGGGGGTGGTCGGTAT
TAAattctcagacatatatgagtactaaaagagtttttgagaatttttta
caTACCGCCATCCCATTTTAGAGGTAGTATTTTATTACCCATGtactaaa
agtttttgggacattttAAC Run BLAST on NCBI transcript from alignment at sc0000061:191280..196205- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005896 ID=TCONS_00005896|Name=TCONS_00005896|organism=Clytia hemisphaerica|type=transcript|length=4926bp|location=Sequence derived from alignment at sc0000061:191280..196205- (Clytia hemisphaerica)
TAGAGAAGTTGTACTAAAATCAGAAAAAAAGAGAAGAAATAGAAAAAACA
AGAAATAAAACAAGAAATAAAAAAAAAACAAGAACTAAAAAGACAAGAAA
TTAAAAAACGGGAAATAAAAAAACATGGGACCACCAAGAATTCTCAGTTG
TATCGATGGAAATGTTATTACCAGCAAAGAAAATCTACCCATTGGTGTTA
CAGAGGAGAAAAAGACAAACATACATTTTCCACTTTTTCAATGTCCAACG
TGCAAAGTTGAGATGAGAAAGAAGTTGAGAGATCATATGAAACACAAACA
CGGGTGATTTTCTTTTTTTTCATTACACTTAATATACCTTTTCGACCGTA
GCCCGCGCGACAATTGGCGGCTACGGTCGAAAAGGTGTATTCAACTCGCG
TACCTTGTACACTGGATCGAAACTATTTCTTCAGCACTTGTGCTTTCGCT
AACGGGCCATTCCATTTTATGTCCCTACAGGGGGTGGACGAACATTTCCA
GGTGTTAAAAGACTAATTTTAGTTCGTCAGCTCATTAGTTCTTGGGCAAA
ATGGTTGTAGGGTATGTGCGAGCTGTAAAGGTCCCTTTTTTAAACGCTCA
AAAGCCTCAAAAGCCTGCAAATCGTAAAATACTGAAAAAAAGATTAATTC
TTTCAAGTCAACCAGGGAAAAGTCTCCGGCTTTAATTTTTGATCCAATCC
AGGGTTTCTAGGGGTAGCAAGATAAACGAGAAAAAATATTGAAATAGATA
AAGTCGAAATGATGATAAAAGTTGTCTGTAACTTGAAATTAAATTTTATT
TTCAACTGATGATCGTCTCCACGGCTTGAAACTATTAGTATTGAAATAAA
ACACATTAAATTCATTCGACAATTAGTATAACTTTGAATTTATAAATTTC
TTTTCAGCTTCCCTCTTAAGCAAGGGTCTTTCATTGCGAGCAAACAAGAG
CGAACACAGATATGCCAACGAAAGCATAAGGGGAACCACATCCTTTTACC
ATGTGAGATATGCAATCACTGGATGTGTAGTATAAATACTTTCATTGATC
ATATGGAAAAACATAAGATTTATCGTACTGGTGCTTTGGCGTTGATTGAA
TCACATAAGATGAAATTTTGGAATACTAAATCTGTGTTGACTCGAGAGCT
TGACAATTTCGGAAACCTGGTGACGACAACAACCAAATTTGATTTAGATT
CAATGCTGTCTTCAGATACACAGAAAAGAGCAATCGCATTCAAATCAATG
GAGGACCGCTCTCTTCCCACGAAGACAATTAAATTATGTACGAATGCAGG
GTCGCCGCTGACGAAAATTAAAGAAAAGTCACCTGGCAACATTTCTTCTC
CTCTTCCAAAAAGAGGAATCGAAACCAACAATACATCAGTTAACTTCAGT
TGTTTCAGCATACGCGAATCAACGAGTGTTAGTTCAAAGGCAGGCTCGTT
GATAAATAATGAAAAGACATTGAATAAAGGGACTTTGTGTACAACCTCTT
TATTTGACAATGTCGGCACTCCTCCGATTAATAAAGCATACACAACAATG
AATCCAACATCTTTAAAAGAAGCGCTGCTAAAGGCTCGAAATGAATCGCG
TAAACGAAAAATCGAAGCAGTCCTCACTGAAGATGATGATAAAATCATAT
CAAAAAACTCAAAAATCGGACGCATTGAATCAGAAGTCGAATCGCCTGAA
ATTGTCAGTGAGAAAAAACGAACAATTGAGGGACGAAGCAGTGCTGGTGT
CGGTAGTAGTGATCTTCCTACAAAAAAGACCAAACTTGATAAAGATAAGA
CAGGTTCTAAAACAAGATCTAAGAAAATTAACCTTTCTAAAAAGATGAAT
TTAGCTGGCTTGATGTCTTTTTGCCCTGAGTGTAATTTAGAAATGCAAAC
GAAACATATACGCGGTCATTTGGAAACCAAGCACAGTTACGTAAAGATGC
AACTAAAAGTTGAATACGCGAGACAGCGCAGAATGGCGCTCTGCTTTAAC
ACCCATCATGGTCAACACGGTGTCATGCGTTGCCCTGACAACTCATGTGA
TAAGTGGATATGTGCTGGAGGGATAAGTTTTCAGGATCACATGCAATACA
AACATGGTTCTTCTCTTGCTGATTCTCTAAAATTAAGAAAAAAACTTATC
GAAAAGTTTCACGGTGGTCAAGTTGTACTCGTTAGAGATATGATGCGCAA
AGTTAAAGAGCCGAGTACTTCATCATTTGTTGATTCAACATTGATTCTTG
GCGATTCTAACACTACTGAAGTCCAACATTCCCAAAGTTCGACTGCAGCA
AAAACTGAATTCAAAATAAGCGAAACTGTAACTGAAAAGGAAACAGATTC
TAACCGTCCCAAACCAGCACTGAGTCAGAATGATAATGTTTCTATTATCA
ACCTTAGCGATGATAAGATTTCAAAACCATCAGAAAATCCCACAAATTTA
ACTGCTGAAAAGTCGAATGTAAATTCTGAAACCAAACACTTAAATCATCT
CAAAACGTTACAGTTTCAATCACCTACACCAACAGTAGATTCAAGTACAA
ATGTCAAACATTCTGCAATTAAACTGTCGAAACTTCCAAAACTGTCAGAT
GAAAGTAATGCTTATAATAACCTTGATCTAAAACAGAGCGCTGTGACCGT
TCAAGAAAAAGCTGCCTTGACATCAAAATATACACCAATTCAATGTTATC
CGAGAGACGCTTTGAAAGTATCCAATAGCCAGAAGTCTGACAGCGAATTA
TTCGAACAAGTACATGATTCGTCCATTAATGTAACATCAATCCCTAAAAA
CATGCCGAATAACAGATATGCTCCTCAGTCTAGCAACCTACAAGAATTCA
TTAAAAAATCGATCATAAAACCTTCCTCGAACCCGGAAAACGATTCTTCG
CAACTTCAGAATGAATTGCCAGCTGAAATTATACACGAAAGTCAAGAAAA
TGCGACTTGTGGTGCCAACATTGAAAAAATTACAGAATGCAGCGAGAATA
GCCTTGTAGCCACCCATTATAACACTGAAATTGTTGCATTGAAAAATTCA
CTCGAGATTGTGAAACATACCACAGATTTACGGAGTACCTTGAAACACCA
AAGCACCCAAACCGAATTATCCATGCCACATACCACAATACATAGGGTTG
ACGCCAAGTCCCAAACCGTTAGTCTTTCGCCAGACTGTTTGAATGGGAAT
GTCTCGGTGTCCAGCCACACCCTCAAAGTGAGTTTTCGTTTATATATGTT
TTGGCGAACGCGACAGTCTTTAGAATAACTAATTATTCCACATACATTAC
TTTCCCTCAGCCAATAAAACATGATAAATTATCTTGTCTCTAGGTAACTG
CTTTGGAGTAATTAGTTATTCCTTAGTTATTTAGTTATTTTTATTTATCT
TTTTTGGAATCTATCAACGCCGAGAAAAGACGTAACATACAGTTCTCGAG
GCTAAAAACCATCGTCACTTTACCACTTTAACATATTCTTGATTCGATTG
ATTTCTCCTTAAAGAATTTACAAAATATTATGTTTTGTCATCTTTTTTAT
GCTTCAGACGTCAATAAGTTGACATAATTTGAATTAATTTCTTTTCAAGG
AATTGGTGCAAGACCTTCAAAATATTTCAACAACCGCTAAACTATTCATC
AGGTGAGCTAATTCATTTGACAATCGAATTGAAGCATGATCAAAAATTCA
AACACATACTTTCCGTAAATTCACAGTTTAGGCGCCCCTACATTTGATAG
ATATGTTCGTTTCATGTCTTTTTTTTATTCAGGAAAGCTCCTGAAATCAA
AGAAAAGTTGACAGTGGTATGCAAAGAAGTTTTGATGGATTTCTCTGAAC
CCCTTAAAAAAGATTTTGCAAAACAATAGCCTAATTTGAAATTTGAATTT
TTTTTGTATTTGATTTTGTATTTGAGTTTTGTTAAATTTTGTTAAATTTT
GTTAAATTTTGTTAAATTTTGTTTATAGACCAGAGTCCGAGATTCAAAAA
ATGCCTTAAAACAGGTTTTCGTAGGGAACCACTTAGATTAGGACAAATAT
TCTGATATTATGTTCCTAATAGAGTGTAGAATTGACAAAAAAGTTTGCCC
TTTGGATCTCCTGCACTTTTGGAGTGAATTCTTTTTTAGTTAATCACGAG
AAATTATCAAGGGTCCTCCTTTGCTATAACGGTTTTCTCGAAGTTTGAAA
TCAAATATTTGATGGAACAATCTCTTATCAGCTTCTGCTCGAAAAGTAGA
TAAAGAAATTGGGGTTATTTGTTAAGTTTCGACACCTGGTGCCGAGAAAT
AGCTTTTTTAAGGCGAAAAATCGACATTTCGTCAGCATTTAGCTGGGATC
ATATTCAGAAAATAATTATTCCCACAACTGGATAGCCCTGAAATAGTAGT
ATCCAAAAATTGTATGGTTTGTTAAATTTAAATATCAAGATCTCGATTTT
TGGATAGCTCGGTTCGTTTGTGCGTTAGTTACCAGCTTTTCTCGAGATTG
GCTCCTTCAATTTTTCTGATTTTTGGCACAAAGATGCATAACTATTAAAC
CTCAAATGTGACGGAGCTCGATTGTCGTAAAAATACGGCTAGAAAAAGGG
TTTTTTGGACTTCGTGAAATATTGGATCATTGTTTTTTTTCTGATTTTCT
TGCATGGAAGTAGGTAATAAATGGCTCAAGCAGATTTTCGTAAAAAAGAT
TTTCGGTGAAATTTTGGTTTTTTAGTGTTTTTTTTTTAGAAACAATCAGC
AGTTTTTCATATTATCATATCATCATATTATCACACGGGGGGGGGGTGGT
CGGTATTAAATTCTCAGACATATATGAGTACTAAAAGAGTTTTTGAGAAT
TTTTTACATACCGCCATCCCATTTTAGAGGTAGTATTTTATTACCCATGT
ACTAAAAGTTTTTGGGACATTTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005896-exon-sc0000061-1575043694:195903..196205 | TCONS_00005896-exon-sc0000061-1575043694:195903..196205 | Clytia hemisphaerica | exon |
| TCONS_00005896-exon-sc0000061-1575043694:192979..195298 | TCONS_00005896-exon-sc0000061-1575043694:192979..195298 | Clytia hemisphaerica | exon |
| TCONS_00005896-exon-sc0000061-1575043694:192554..192606 | TCONS_00005896-exon-sc0000061-1575043694:192554..192606 | Clytia hemisphaerica | exon |
| TCONS_00005896-exon-sc0000061-1575043694:191280..192423 | TCONS_00005896-exon-sc0000061-1575043694:191280..192423 | Clytia hemisphaerica | exon |
| TCONS_00005896-exon-sc0000061-1510915933:195903..196205 | TCONS_00005896-exon-sc0000061-1510915933:195903..196205 | Clytia hemisphaerica | exon |
| TCONS_00005896-exon-sc0000061-1510915933:192979..195298 | TCONS_00005896-exon-sc0000061-1510915933:192979..195298 | Clytia hemisphaerica | exon |
| TCONS_00005896-exon-sc0000061-1510915933:192554..192606 | TCONS_00005896-exon-sc0000061-1510915933:192554..192606 | Clytia hemisphaerica | exon |
| TCONS_00005896-exon-sc0000061-1510915933:191280..192423 | TCONS_00005896-exon-sc0000061-1510915933:191280..192423 | Clytia hemisphaerica | exon |
| TCONS_00005896-exon-sc0000061-1491911889:195903..196205 | TCONS_00005896-exon-sc0000061-1491911889:195903..196205 | Clytia hemisphaerica | exon |
| TCONS_00005896-exon-sc0000061-1491911889:192979..195298 | TCONS_00005896-exon-sc0000061-1491911889:192979..195298 | Clytia hemisphaerica | exon |
| TCONS_00005896-exon-sc0000061-1491911889:192554..192606 | TCONS_00005896-exon-sc0000061-1491911889:192554..192606 | Clytia hemisphaerica | exon |
| TCONS_00005896-exon-sc0000061-1491911889:191280..192423 | TCONS_00005896-exon-sc0000061-1491911889:191280..192423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:191280..196205 - |
Blast
The following BLAST results are available for this feature:
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