TCONS_00005889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005889
Unique NameTCONS_00005889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2911

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005889 ID=TCONS_00005889|Name=TCONS_00005889|organism=Clytia hemisphaerica|type=transcript|length=2911bp
TTCTCCAGGAAAGCACCAGATCTTGAAGAAAGGTTGACATTGATTTGCAA
AGAAGTACTTGTGGATCTATCAGAACCTGTCAGGAGGAACATTCGAAATA
AAGAAACAATCAACCCTTGAAAAATGACAATTCTAAGTTTTTAAAGTTGA
CCCTTTATTGATTGGAACACCTATTACGTTTATTTTGTAGTATATTGGAC
TAAGCATCTGATTTTTCTGTAATTTCGAATTGCATTATACTATAAGTTTT
TATGCTgcttaattttgtaaaataagCACAGATTACTccaaggggccgtc
cacatagtacgtacgcactgaaatgtcgaaaatcggatacccctccccct
gtacgcaaatggctataccccctggtaagtacgtacttttcatccacccc
ccccctcggttgaagaaaatttcgaattcaattcgtttggttcggacctt
tatttcatacattaGACTCAAtgatgtttattaagaaactttttctattC
CTTGGTGCGTATAAGAAAcgtaaaaatcgacaaaaaacaagcaaaaaagg
gctatgaaacacttttctctgcgtacgtacattttcctttgacccctccc
cttcccccgtacgcaagcatacgcttttaaGAAGACTCCctctccccctt
agtgcgtacgtactatgtggacggccctcAAGTGTGTTATGTTTTGGTAT
GTTTCGGACAAACCATatcctgtttttgtttttgagaaagttgaattttt
tatacagttgactctctataattcgatcttcaagggaccaagaattttct
tcgaattagagaaagattcgttACAGAGAGTATTCTTTATTTCTAGCTGA
GGGGATTATAATATTttagttcaaattatagaaagattcgaaaagtagag
gttcgaattagcgagagttcacTATAGTTTGTATTTATCTTTGATTTCTT
CGTCTCTCGATTCAAATGCGAAATCTCGAGCTTGCATtgtgtttttttgt
gaaattactctcgggtgcctaataaacgtacatgtacgtatTTGTAACCA
ttaattaaattcaatgaaCTAAATTAACTCACTAAGCAAAATTCTTGTAC
TCCATCTTCTTGCACTAATATTTTTCCGGGGTAGAAACTCCTAAATAATG
TACAAGCTACCCTGTCTGTTCTTTGTTTCTTTGTTAGTAGCCCCCTCCCC
TTGTTTCTGCATATTTTTAATTGCAATTATCATTTCAGTCATATGTCATT
TCGATTGTACAACAATCTAAGCATTATTGCatttttattgataatttttt
tatattttaaagatAGAACTAAATAGAAAGTGACGAAAGAACCCAACCTA
AAATAAttcctgaaataaaaaacaaagactgAGGAGGAActaaaaataca
tgttttttttNATTTTATCTTTTCGATCCAGGGGCTGTGCGCGACATTCG
CAAGTTGACCCTGAGGACTGGTGTCAAATTTGTGACTCGAAACGTGGATT
TTATGTCAAAAGAACATTAAAAGACAACTCTCCACCTATCTTCAGTAACC
GCACGACATTCTTCGCATTCAGAGGACAAAATCATTCCTTTCAAATATTG
GCTGAGGACCCTGAAAACAAGACGGTGAATTATGCGATTAAAGGCGTATC
TGATGAATTTAACATTAGTAAAGAAGGGGTCTTGACTTCCACATCCAAAG
ATGTTGACAGTTTCAAAATCGTGATAACAGCAACTGATATTTGTGGAGAA
TTTTCAGAGAAAGAATTTGTTTTCGAATCAAAGAAATGTTCTTGCGAAAG
TGAAAATGGTGGTTTTTGTGAATGGAATGATGAAACGGGAAATGACATGA
GATGTGTTTGTCCCGATGGTTGTGTCAAAGATGGgCATTGTTATACTGAC
GGTGAAACTCATCATGCTGATTGGTGCGAAATTTGTGACGTAAACATGGG
AAGTTTCGCTAAAAGAACGGACAACCTTCCACCagttttcaaaaacaaca
aaaccagATTTTACGCCATGGTCGATCATAAAAATCCTTTCCAACTCATT
GTAGAAGATCCTGAAAAAAAGCCAATAAATTTTAGTATCTCTGGCAATAA
AGATGCCGGAATATGCGTCAATGAGTCTGGTATCCTCACCATCAAACCAC
AGGATGGTTCTGAAGTCACCACAGTTGTGGTTCGAGCAATTGACATTTGC
GGTGCTTTTACGGACCAAGAATTTGTCTTTGATACGCAAGTGTGTGAAGA
TGACATCAATTATACTTACGCCTTCCGATGCAACATATGGGCGGAACACC
ATGTCTGCAAAACCCACCCGTCTATGATGCGAAAACATTGCGCTGGTTCG
TGTAAATATTGTGATAATTTGAATGATTACAAAACACTTTAAACACTTTA
AGCAGTCAGTGTTTTCATCGTATGTTTTCATCTACCTGTACATAAAATTC
TAAAGCTGGCATAGTcaagaaaaacagaaaatcaGGCATATGTCTTTTCG
ATTCAGAAAGCGATTTTACTTTCTTGGAATACAACGTAATGGTCGATGAC
GCCAAATATTACAATTGACGGGATAAGGATGAATTTGAAATGCAGGACGT
GGCAATAGATTTTAGATACCTTGAGGGAACTAATTATGAATTCTTCAACA
AACGGATTTTTGGATGTCACTTGGGTGAGGAATAAGATGCAATGGCGTGT
ACGAAAGATCGTTAATAAAGCTATCAGTGTATTCGATGCGATTGTACTGA
ACTCGTAAAACAATTCTGTTTAGGTTAAATCTATATTTCAAGACTGTAAA
ATCTATATTTTTAGAATGAGTTGATTCCATCATACATTGAATGTATTGTT
TGTAGATTTTCGAACTTGaacttttttgattattttcttttctaaataAA
ATATCTTGGAA
Run BLAST on NCBI

transcript from alignment at sc0000061:181296..186123-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005889 ID=TCONS_00005889|Name=TCONS_00005889|organism=Clytia hemisphaerica|type=transcript|length=4828bp|location=Sequence derived from alignment at sc0000061:181296..186123- (Clytia hemisphaerica)
TTCTCCAGGAAAGCACCAGATCTTGAAGAAAGGTTGACATTGATTTGCAA
AGAAGTACTTGTGGATCTATCAGAACCTGTCAGGAGGAACATTCGAAATA
AAGAAACAATCAACCCTTGAAAAATGACAATTCTAAGTTTTTAAAGTTGA
CCCTTTATTGATTGGAACACCTATTACGTTTATTTTGTAGTATATTGGAC
TAAGCATCTGATTTTTCTGTAATTTCGAATTGCATTATACTATAAGTTTT
TATGCTGCTTAATTTTGTAAAATAAGCACAGATTACTCCAAGGGGCCGTC
CACATAGTACGTACGCACTGAAATGTCGAAAATCGGATACCCCTCCCCCT
GTACGCAAATGGCTATACCCCCTGGTAAGTACGTACTTTTCATCCACCCC
CCCCCTCGGTTGAAGAAAATTTCGAATTCAATTCGTTTGGTTCGGACCTT
TATTTCATACATTAGACTCAATGATGTTTATTAAGAAACTTTTTCTATTC
CTTGGTGCGTATAAGAAACGTAAAAATCGACAAAAAACAAGCAAAAAAGG
GCTATGAAACACTTTTCTCTGCGTACGTACATTTTCCTTTGACCCCTCCC
CTTCCCCCGTACGCAAGCATACGCTTTTAAGAAGACTCCCTCTCCCCCTT
AGTGCGTACGTACTATGTGGACGGCCCTCAAGTGTGTTATGTTTTGGTAT
GTTTCGGACAAACCATATCCTGTTTTTGTTTTTGAGAAAGTTGAATTTTT
TATACAGTTGACTCTCTATAATTCGATCTTCAAGGGACCAAGAATTTTCT
TCGAATTAGAGAAAGATTCGTTACAGAGAGTATTCTTTATTTCTAGCTGA
GGGGATTATAATATTTTAGTTCAAATTATAGAAAGATTCGAAAAGTAGAG
GTTCGAATTAGCGAGAGTTCACTATAGTTTGTATTTATCTTTGATTTCTT
CGTCTCTCGATTCAAATGCGAAATCTCGAGCTTGCATTGTGTTTTTTTGT
GAAATTACTCTCGGGTGCCTAATAAACGTACATGTACGTATTTGTAACCA
TTAATTAAATTCAATGAACTAAATTAACTCACTAAGCAAAATTCTTGTAC
TCCATCTTCTTGCACTAATATTTTTCCGGGGTAGAAACTCCTAAATAATG
TACAAGCTACCCTGTCTGTTCTTTGTTTCTTTGTTAGTAGCCCCCTCCCC
TTGTTTCTGCATATTTTTAATTGCAATTATCATTTCAGTCATATGTCATT
TCGATTGTACAACAATCTAAGCATTATTGCATTTTTATTGATAATTTTTT
TATATTTTAAAGATAGAACTAAATAGAAAGTGACGAAAGAACCCAACCTA
AAATAATTCCTGAAATAAAAAACAAAGACTGAGGAGGAACTAAAAATACA
TGTTTTTTTTNATTTTATCTTTTCGATCCAGGGGCTGTGCGCGACATTCG
CAAGTTGACCCTGAGGACTGGTGTCAAATTTGTGACTCGAAACGTGGATT
TTATGTCAAAAGAACATTAAAAGGTTAGATTTATTGAACTTTTCAAGATC
ACGTAGAAATGTGTATCGTATTGTCGCGGTGGTTGTACCCCCGGAGGGGG
ATAGTGCAAATACGAGGGGCGTCAAAATCCACCAAGAGAAGTCATTTTGC
CGTGCTTTTTGTCTTTTTTTTCATTCAATAAATTCACATATACCTTTTAA
TAATCACAAATGATTTTAATCTCAATTGGTTCCGCATTAACGAGACAATC
CTGTGTTCCGGGGTACTATCGTGAGTGCTTTATGTGTGTCGTACATAAGC
CACTTCCATGAAAATGTATGATATTATCTTTTCCTTTTTAGACAACTCTC
CACCTATCTTCAGTAACCGCACGACATTCTTCGCATTCAGAGGACAAAAT
CATTCCTTTCAAATATTGGCTGAGGACCCTGAAAACAAGACGGTGAATTA
TGCGATTAAAGGCGTATCTGATGAATTTAACATTAGTAAAGAAGGGGTCT
TGACTTCCACATCCAAAGATGTTGACAGTTTCAAAATCGTGATAACAGCA
ACTGATATTTGTGGAGAATTTTCAGAGAAAGAATTTGTTTTCGAATCAAA
GAAATGTTCTTGCGAAAGTGAAAATGGTGGTTTTTGTGAATGGAATGATG
AAACGGGAAATGACATGAGATGTGTTTGTCCCGATGGTTGTGTCAAAGAT
GGGTACGATTTTTAACAAAAATTCGAAAATGTGTTTTAGGGCTATGTATG
TAACAGTGCATTTAAAATTTCAATCGTTTCATTTCCCTTGAACGGGTATT
ATTTGAAAAGTCATTTCTTAACTACTGTACCATCGGCTACATTCAACTAC
AATTATTTTCTAAATGTCATTTTGAATTATTTTTAGGCATTGTTATACTG
ACGGTGAAACTCATCATGCTGATTGGTGCGAAATTTGTGACGTAAACATG
GGAAGTTTCGCTAAAAGAACGGGTAAGTGGACTATCTCTTTTCTGACATC
TTTTCAGAGATCTTGTAGCCGAAAGAGCCGCTTGGACTCATTACAAACGT
AATCGAAAAAAAGGAACTAGACTAAAACAAAACTATACGATACAATACCA
ATAATGTCTTCTCTTATTTTTAATCTGGACAAGTAGTAACTATTCCTTCC
TGTTCCCTTCACAGACAACCTTCCACCAGTTTTCAAAAACAACAAAACCA
GATTTTACGCCATGGTCGATCATAAAAATCCTTTCCAACTCATTGTAGAA
GATCCTGAAAAAAAGCCAATAAATTTTAGTATCTCTGGCAATAAAGATGC
CGGAATATGCGTCAATGAGTCTGGTATCCTCACCATCAAACCACAGGATG
GTTCTGAAGTCACCACAGTTGTGGTTCGAGCAATTGACATTTGCGGTGCT
TTTACGGACCAAGAATTTGTCTTTGATACGCAAGGTTAGTTTAGTGAAGC
TCGACTTTCTCTGCTTTGGTTCATACTGCAGTTTCGGACATGAATGCGTC
ATCTTAGGACGCCTTGGCTGAAATTTCGATACTTGCCAATGTGAAATATT
TCTGAAAGATAATCCTATTTAAGATTCTACACATCCAGCTCATTTCAAGA
TTGTAATTTGCTCCTTACTTACGCATCCGATCCATCTCAAGATTATTACT
TTATCCTCAACCCTATTTCAACCTAGGCTTTTAGGAGCAGTTTAGAACTA
GGGGGGTGGGGGGCTTTTCCTGTACCACCCCTTAACTTTTGATCTAGTGG
GTCTTTTTGAATGAAATTTGGCACACAAGATCCTTGTCACATAAGGTAAC
TTTCAAGAAAAAAATTTTTTTGATGTCGTCATTCATCATGCGCGAAGTGA
GCAAAAACCGAAAATTTCCTATGTTCTTATAAATAGCTATTGTATTCTAA
CAAAGGCTTTAGAAAAAAGTTGGCTGAGTTTAAACTGCTTATTTCATCCT
AAATATTCAATAAATTAACGATAAACGATATATTTGACATAAAAAATAAA
TTTGTATTGGAAAAGTGTCAATTTTTTTTTATTTTGAAGCTAAATAAAAG
TTAGGAATTTACAGAAAATTTCACGTCAAACGGCAAAAGCTCTATTATTT
CAGGAGCTATTACCAATAATTTTACCTCCGAACAGGCCGAATAGGGTAAA
GCAAGAATATTCTTGCTTAAAATCATGAAAGCTTTAATTCATACTGCTCC
TAAACTTTCCTTACCCGTCAAACATCGAAGCCACAGACCTTGTTCATCAG
CTCGAATATTCATTTACATGCTAAAGCAACTTAGACCATGTTCAGATGTT
ACGGTTTCGTATCGCGCTGAATCGAAACGGGCTCGAAGCACTGTGTGAAC
GTCAAAATTCGAAGCGTCAAAAAGAAGACGTCAAAGAAGACGTCGAAAAG
AAGATGTCAAAAAGCAAAACAGATCGAAACGGCTGATACGTTTTCGCTCC
ACTATTTTCATTGGAACGGAACTGCTCCGTTTCGTTGCTCCGAAACGTTC
CGAAATCAATATGATCATTTCCATTCTTATCAAATATCATACCGGAGCGA
TACGAAACCGTAACGCCTGAATATAAATCTTAGAATTTTATGATAGGCTC
TCAAAGTTTTAACATAGCTGCCATTAAATTTTTCTTCTTTATTCTTCTTA
TATTCAGTGTGTGAAGATGACATCAATTATACTTACGCCTTCCGATGCAA
CATATGGGCGGAACACCATGTCTGCAAAACCCACCCGTCTATGATGCGAA
AACATTGCGCTGGTTCGTGTAAATATTGTGATAATTTGAATGATTACAAA
ACACTTTAAACACTTTAAGCAGTCAGTGTTTTCATCGTATGTTTTCATCT
ACCTGTACATAAAATTCTAAAGCTGGCATAGTCAAGAAAAACAGAAAATC
AGGCATATGTCTTTTCGATTCAGAAAGCGATTTTACTTTCTTGGAATACA
ACGTAATGGTCGATGACGCCAAATATTACAATTGACGGGATAAGGATGAA
TTTGAAATGCAGGACGTGGCAATAGATTTTAGATACCTTGAGGGAACTAA
TTATGAATTCTTCAACAAACGGATTTTTGGATGTCACTTGGGTGAGGAAT
AAGATGCAATGGCGTGTACGAAAGATCGTTAATAAAGCTATCAGTGTATT
CGATGCGATTGTACTGAACTCGTAAAACAATTCTGTTTAGGTTAAATCTA
TATTTCAAGACTGTAAAATCTATATTTTTAGAATGAGTTGATTCCATCAT
ACATTGAATGTATTGTTTGTAGATTTTCGAACTTGAACTTTTTTGATTAT
TTTCTTTTCTAAATAAAATATCTTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003361XLOC_003361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005889-exon-sc0000061-1575043694:184601..186123TCONS_00005889-exon-sc0000061-1575043694:184601..186123Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1575043694:183922..184282TCONS_00005889-exon-sc0000061-1575043694:183922..184282Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1575043694:183652..183737TCONS_00005889-exon-sc0000061-1575043694:183652..183737Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1575043694:183190..183459TCONS_00005889-exon-sc0000061-1575043694:183190..183459Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1575043694:181296..181966TCONS_00005889-exon-sc0000061-1575043694:181296..181966Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1510915933:184601..186123TCONS_00005889-exon-sc0000061-1510915933:184601..186123Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1510915933:183922..184282TCONS_00005889-exon-sc0000061-1510915933:183922..184282Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1510915933:183652..183737TCONS_00005889-exon-sc0000061-1510915933:183652..183737Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1510915933:183190..183459TCONS_00005889-exon-sc0000061-1510915933:183190..183459Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1510915933:181296..181966TCONS_00005889-exon-sc0000061-1510915933:181296..181966Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1491911889:184601..186123TCONS_00005889-exon-sc0000061-1491911889:184601..186123Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1491911889:183922..184282TCONS_00005889-exon-sc0000061-1491911889:183922..184282Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1491911889:183652..183737TCONS_00005889-exon-sc0000061-1491911889:183652..183737Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1491911889:183190..183459TCONS_00005889-exon-sc0000061-1491911889:183190..183459Clytia hemisphaericaexon
TCONS_00005889-exon-sc0000061-1491911889:181296..181966TCONS_00005889-exon-sc0000061-1491911889:181296..181966Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:181296..186123 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.09827	2.41983	2.05308	2.40867	1.02589	0.695996	1.07387	1.03957	0.57698	0.818124	0.463171	0.454952	0.434203	0.590083	0.970706	0.889053	0.972014	0.91348	0.283735	0.255826	0.959015	1.14866	3.053	2.95582	1.79887	1.68905	0.784555	0.586247	2.28711	1.69414
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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